Clone BO12573 Report

Search the DGRC for BO12573

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptRas64B-RA
Protein status:BO12573.pep: validated full length
Sequenced Size:610

Clone Sequence Records

BO12573.3prime Sequence

608 bp (607 high quality bases) assembled on 2006-05-08

> BO12573.3prime
ATGGTCTAGAAAGCTTGCCATCAGGCAGCACTTCCTCTTGCCCTTCTTCT
TGTAATCCTGCTCGATGAAGGGACGCTCGGCGATCTGGAACTTGCGCACG
ATCCTCACGAGCTCGTGGAAGGCCTGATCGACGTTGACCCTCAGTTTGGC
ACTGCACTCGATGTAGGGGATCATCAGGTTGCGGCTGGTGTTCTGCGCCT
CCTCCAGGGACACCTGCTGCTGGTGCTTCAGGTCGCACTTGTTACCCACC
ATCAGCATGGGGAACTCGTCGCGATCCTTGACGCGCAGTATCTGGCGCTG
GAACTTGGGGATCTCATCGAAGCTGGAATGATCGTTGAGCGCGAAGACGA
GCAGGAATCCCTCGCCGGAGCGCATGTACTGCTCCCGCATGGCACTGAAC
TCCTCCTGGCCAGCCGTGTCCAAAATGTCCAATTTGGCTGGCACATCGTC
GATGTTGCACTGCTTCGTGTACGAGTCTTCAATGGTGGGATCGTAGTCCG
TGACGAAGTAGCTCTGGATGAACTGTATCGTTATCGCTGACTTGCCCACG
CCGCCGCCGCCGACGACCACCAGTTTGTACGTTTGCATCTGCATGTCGAC
TGATAACT

BO12573.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1167-PA 579 Ras64B-RA 1..576 594..19 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-RA 1620 CG1167-RA 104..679 594..19 2880 100 Minus
Ras85D-RA 1958 CG9375-RA 451..696 579..334 285 76.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:43:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4140051..4140457 425..19 2035 100 Minus
3L 28110227 3L 4139904..4139994 516..426 455 100 Minus
3L 28110227 3L 4139179..4139259 594..514 405 100 Minus
3R 32079331 3R 9511881..9511978 334..431 220 81.6 Plus
3R 32079331 3R 9512172..9512282 469..579 180 77.5 Plus
Blast to na_te.dros performed on 2015-02-01 04:43:07 has no hits.

BO12573.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:41 Download gff for BO12573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1167-PA 1..579 18..594 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:53 Download gff for BO12573.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1167-PA 1..579 18..594 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:47 Download gff for BO12573.3prime
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 101..679 19..597 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:56 Download gff for BO12573.3prime
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 101..679 19..597 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:56 Download gff for BO12573.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4139176..4139259 514..597 98 -> Minus
3L 4139907..4139994 426..513 100 -> Minus
3L 4140051..4140457 19..425 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:47 Download gff for BO12573.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4139176..4139259 514..597 98 -> Minus
arm_3L 4139907..4139994 426..513 100 -> Minus
arm_3L 4140051..4140457 19..425 100   Minus

BO12573.5prime Sequence

608 bp (607 high quality bases) assembled on 2006-05-08

> BO12573.5prime
GAAGTTATCAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCG
GCGGCGGCGGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGC
TACTTCGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCA
GTGCAACATCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTG
GCCAGGAGGAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAG
GGATTCCTGCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGAT
CCCCAAGTTCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCC
CCATGCTGATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTG
TCCCTGGAGGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACAT
CGAGTGCAGTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGC
TCGTGAGGATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAG
CAGGATTACAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGGCAAGCTT
TCTAGACC

BO12573.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1167-PA 579 Ras64B-RA 1..576 17..592 2880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-RA 1620 CG1167-RA 104..679 17..592 2880 100 Plus
Ras85D-RA 1958 CG9375-RA 451..696 32..277 285 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4140051..4140457 186..592 2035 100 Plus
3L 28110227 3L 4139904..4139994 95..185 455 100 Plus
3L 28110227 3L 4139179..4139259 17..97 405 100 Plus
3R 32079331 3R 9511881..9511978 277..180 220 81.6 Minus
3R 32079331 3R 9512172..9512282 142..32 180 77.5 Minus
Blast to na_te.dros performed on 2015-02-13 02:27:29 has no hits.

BO12573.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:42 Download gff for BO12573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1167-PA 1..579 17..593 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:54 Download gff for BO12573.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1167-PA 1..579 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:33 Download gff for BO12573.5prime
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 101..679 14..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:19:49 Download gff for BO12573.5prime
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 101..679 14..592 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:19:49 Download gff for BO12573.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4139176..4139259 14..97 98 -> Plus
3L 4139907..4139994 98..185 100 -> Plus
3L 4140051..4140457 186..592 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:33 Download gff for BO12573.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4139176..4139259 14..97 98 -> Plus
arm_3L 4139907..4139994 98..185 100 -> Plus
arm_3L 4140051..4140457 186..592 100   Plus

BO12573.complete Sequence

610 bp assembled on 2007-10-17

GenBank Submission: FJ632495

> BO12573.complete
GAAGTTATCAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCG
GCGGCGGCGGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGC
TACTTCGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCA
GTGCAACATCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTG
GCCAGGAGGAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAG
GGATTCCTGCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGAT
CCCCAAGTTCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCC
CCATGCTGATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTG
TCCCTGGAGGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACAT
CGAGTGCAGTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGC
TCGTGAGGATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAG
CAGGATTACAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGGCAAGCTT
TCTAGACCAT

BO12573.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-RA 579 CG1167-PA 1..576 17..592 2880 100 Plus
Ras85D-RA 570 CG9375-PA 10..255 32..277 255 73.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-RA 1620 CG1167-RA 104..679 17..592 2880 100 Plus
Ras85D-RA 1958 CG9375-RA 451..696 32..277 255 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4140051..4140457 186..592 2035 100 Plus
3L 28110227 3L 4139904..4139994 95..185 455 100 Plus
3L 28110227 3L 4139179..4139259 17..97 405 100 Plus
3R 32079331 3R 9511881..9511978 277..180 220 81.6 Minus
3R 32079331 3R 9512172..9512282 142..32 180 77.5 Minus
Blast to na_te.dros performed on 2014-11-27 07:55:26 has no hits.

BO12573.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:40 Download gff for BO12573.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 1..579 17..593 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:53 Download gff for BO12573.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 99..677 14..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:30 Download gff for BO12573.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 104..679 17..594 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:24 Download gff for BO12573.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 102..677 17..594 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:22 Download gff for BO12573.complete
Subject Subject Range Query Range Percent Splice Strand
Ras64B-RA 104..679 17..594 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:22 Download gff for BO12573.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4139179..4139259 17..97 100 -> Plus
3L 4139907..4139994 98..185 100 -> Plus
3L 4140051..4140457 186..594 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:30 Download gff for BO12573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4139179..4139259 17..97 100 -> Plus
arm_3L 4139907..4139994 98..185 100 -> Plus
arm_3L 4140051..4140457 186..594 99   Plus

BO12573.pep Sequence

Translation from 16 to 610

> BO12573.pep
MQMQTYKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIEDSYTKQCNIDD
VPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQR
QILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAK
LRVNVDQAFHELVRIVRKFQIAERPFIEQDYKKKGKRKCCLMASFLDH

BO12573.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ras64B-PA 192 CG1167-PA 1..192 1..192 996 100 Plus
Ras85D-PA 189 CG9375-PA 1..165 3..168 513 62.7 Plus
R-PC 184 CG1956-PC 1..184 3..192 464 47.9 Plus
R-PB 184 CG1956-PB 1..184 3..192 464 47.9 Plus
R-PA 184 CG1956-PA 1..184 3..192 464 47.9 Plus