Clone Sequence Records
BO12573.3prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO12573.3prime
ATGGTCTAGAAAGCTTGCCATCAGGCAGCACTTCCTCTTGCCCTTCTTCT
TGTAATCCTGCTCGATGAAGGGACGCTCGGCGATCTGGAACTTGCGCACG
ATCCTCACGAGCTCGTGGAAGGCCTGATCGACGTTGACCCTCAGTTTGGC
ACTGCACTCGATGTAGGGGATCATCAGGTTGCGGCTGGTGTTCTGCGCCT
CCTCCAGGGACACCTGCTGCTGGTGCTTCAGGTCGCACTTGTTACCCACC
ATCAGCATGGGGAACTCGTCGCGATCCTTGACGCGCAGTATCTGGCGCTG
GAACTTGGGGATCTCATCGAAGCTGGAATGATCGTTGAGCGCGAAGACGA
GCAGGAATCCCTCGCCGGAGCGCATGTACTGCTCCCGCATGGCACTGAAC
TCCTCCTGGCCAGCCGTGTCCAAAATGTCCAATTTGGCTGGCACATCGTC
GATGTTGCACTGCTTCGTGTACGAGTCTTCAATGGTGGGATCGTAGTCCG
TGACGAAGTAGCTCTGGATGAACTGTATCGTTATCGCTGACTTGCCCACG
CCGCCGCCGCCGACGACCACCAGTTTGTACGTTTGCATCTGCATGTCGAC
TGATAACT
BO12573.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1167-PA | 579 | Ras64B-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-RA | 1620 | CG1167-RA | 104..679 | 594..19 | 2880 | 100 | Minus |
Ras85D-RA | 1958 | CG9375-RA | 451..696 | 579..334 | 285 | 76.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4140051..4140457 | 425..19 | 2035 | 100 | Minus |
3L | 28110227 | 3L | 4139904..4139994 | 516..426 | 455 | 100 | Minus |
3L | 28110227 | 3L | 4139179..4139259 | 594..514 | 405 | 100 | Minus |
3R | 32079331 | 3R | 9511881..9511978 | 334..431 | 220 | 81.6 | Plus |
3R | 32079331 | 3R | 9512172..9512282 | 469..579 | 180 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-01 04:43:07 has no hits.
BO12573.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:41 Download gff for
BO12573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1167-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:53 Download gff for
BO12573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1167-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:47 Download gff for
BO12573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 101..679 | 19..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:56 Download gff for
BO12573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 101..679 | 19..597 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:56 Download gff for
BO12573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4139176..4139259 | 514..597 | 98 | -> | Minus |
3L | 4139907..4139994 | 426..513 | 100 | -> | Minus |
3L | 4140051..4140457 | 19..425 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:47 Download gff for
BO12573.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4139176..4139259 | 514..597 | 98 | -> | Minus |
arm_3L | 4139907..4139994 | 426..513 | 100 | -> | Minus |
arm_3L | 4140051..4140457 | 19..425 | 100 | | Minus |
BO12573.5prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO12573.5prime
GAAGTTATCAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCG
GCGGCGGCGGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGC
TACTTCGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCA
GTGCAACATCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTG
GCCAGGAGGAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAG
GGATTCCTGCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGAT
CCCCAAGTTCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCC
CCATGCTGATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTG
TCCCTGGAGGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACAT
CGAGTGCAGTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGC
TCGTGAGGATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAG
CAGGATTACAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGGCAAGCTT
TCTAGACC
BO12573.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1167-PA | 579 | Ras64B-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-RA | 1620 | CG1167-RA | 104..679 | 17..592 | 2880 | 100 | Plus |
Ras85D-RA | 1958 | CG9375-RA | 451..696 | 32..277 | 285 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4140051..4140457 | 186..592 | 2035 | 100 | Plus |
3L | 28110227 | 3L | 4139904..4139994 | 95..185 | 455 | 100 | Plus |
3L | 28110227 | 3L | 4139179..4139259 | 17..97 | 405 | 100 | Plus |
3R | 32079331 | 3R | 9511881..9511978 | 277..180 | 220 | 81.6 | Minus |
3R | 32079331 | 3R | 9512172..9512282 | 142..32 | 180 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:27:29 has no hits.
BO12573.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:42 Download gff for
BO12573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1167-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:16:54 Download gff for
BO12573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1167-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:33 Download gff for
BO12573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 101..679 | 14..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:19:49 Download gff for
BO12573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 101..679 | 14..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:19:49 Download gff for
BO12573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4139176..4139259 | 14..97 | 98 | -> | Plus |
3L | 4139907..4139994 | 98..185 | 100 | -> | Plus |
3L | 4140051..4140457 | 186..592 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:33 Download gff for
BO12573.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4139176..4139259 | 14..97 | 98 | -> | Plus |
arm_3L | 4139907..4139994 | 98..185 | 100 | -> | Plus |
arm_3L | 4140051..4140457 | 186..592 | 100 | | Plus |
BO12573.complete Sequence
610 bp assembled on 2007-10-17
GenBank Submission: FJ632495
> BO12573.complete
GAAGTTATCAGTCGACATGCAGATGCAAACGTACAAACTGGTGGTCGTCG
GCGGCGGCGGCGTGGGCAAGTCAGCGATAACGATACAGTTCATCCAGAGC
TACTTCGTCACGGACTACGATCCCACCATTGAAGACTCGTACACGAAGCA
GTGCAACATCGACGATGTGCCAGCCAAATTGGACATTTTGGACACGGCTG
GCCAGGAGGAGTTCAGTGCCATGCGGGAGCAGTACATGCGCTCCGGCGAG
GGATTCCTGCTCGTCTTCGCGCTCAACGATCATTCCAGCTTCGATGAGAT
CCCCAAGTTCCAGCGCCAGATACTGCGCGTCAAGGATCGCGACGAGTTCC
CCATGCTGATGGTGGGTAACAAGTGCGACCTGAAGCACCAGCAGCAGGTG
TCCCTGGAGGAGGCGCAGAACACCAGCCGCAACCTGATGATCCCCTACAT
CGAGTGCAGTGCCAAACTGAGGGTCAACGTCGATCAGGCCTTCCACGAGC
TCGTGAGGATCGTGCGCAAGTTCCAGATCGCCGAGCGTCCCTTCATCGAG
CAGGATTACAAGAAGAAGGGCAAGAGGAAGTGCTGCCTGATGGCAAGCTT
TCTAGACCAT
BO12573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-RA | 579 | CG1167-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Ras85D-RA | 570 | CG9375-PA | 10..255 | 32..277 | 255 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-RA | 1620 | CG1167-RA | 104..679 | 17..592 | 2880 | 100 | Plus |
Ras85D-RA | 1958 | CG9375-RA | 451..696 | 32..277 | 255 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4140051..4140457 | 186..592 | 2035 | 100 | Plus |
3L | 28110227 | 3L | 4139904..4139994 | 95..185 | 455 | 100 | Plus |
3L | 28110227 | 3L | 4139179..4139259 | 17..97 | 405 | 100 | Plus |
3R | 32079331 | 3R | 9511881..9511978 | 277..180 | 220 | 81.6 | Minus |
3R | 32079331 | 3R | 9512172..9512282 | 142..32 | 180 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:55:26 has no hits.
BO12573.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:40 Download gff for
BO12573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:53 Download gff for
BO12573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 99..677 | 14..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:30 Download gff for
BO12573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 104..679 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:24 Download gff for
BO12573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 102..677 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:22 Download gff for
BO12573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ras64B-RA | 104..679 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:22 Download gff for
BO12573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4139179..4139259 | 17..97 | 100 | -> | Plus |
3L | 4139907..4139994 | 98..185 | 100 | -> | Plus |
3L | 4140051..4140457 | 186..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:30 Download gff for
BO12573.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4139179..4139259 | 17..97 | 100 | -> | Plus |
arm_3L | 4139907..4139994 | 98..185 | 100 | -> | Plus |
arm_3L | 4140051..4140457 | 186..594 | 99 | | Plus |
BO12573.pep Sequence
Translation from 16 to 610
> BO12573.pep
MQMQTYKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIEDSYTKQCNIDD
VPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQR
QILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAK
LRVNVDQAFHELVRIVRKFQIAERPFIEQDYKKKGKRKCCLMASFLDH
BO12573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ras64B-PA | 192 | CG1167-PA | 1..192 | 1..192 | 996 | 100 | Plus |
Ras85D-PA | 189 | CG9375-PA | 1..165 | 3..168 | 513 | 62.7 | Plus |
R-PC | 184 | CG1956-PC | 1..184 | 3..192 | 464 | 47.9 | Plus |
R-PB | 184 | CG1956-PB | 1..184 | 3..192 | 464 | 47.9 | Plus |
R-PA | 184 | CG1956-PA | 1..184 | 3..192 | 464 | 47.9 | Plus |