Clone Sequence Records
BO12577.3prime Sequence
923 bp (760 high quality bases) assembled on 2006-05-08
> BO12577.3prime
ATGGTCTAGAAAGCTTGCCTTGGGCACAATGATCCTCAAGCTCTCGAAGT
ACTTAATTATCTGCAATGGATACGCTTCCTTAATGTCATTAATATGCACT
GCATCGATGGACGAGCAGCCCTTCCACGTGACAAACATGAATAGATCGTC
ATTCATCTGGTAGCAGTGGAGAATTTTATCCAGATCCAGTCCGCGATTCA
CACCGAAGGGTTTCGTCATCTCCGGGAATTTCCAATCCGGGTAAGTTTTT
TTACGCTTGCGGCGCGGACAGCGGCGCATGCTCTCCACTTCGGAATCCAT
GGAATCACTGCCAGATAAATCCAAGCCAATGTCCCCTTCTTTTGGTGCGC
CCAGCGATGAAGCCGCATGACCACCATCGGATGACCTAGACGAAAACTTT
ATCTGGCCGAGCGTTTTAGGTTCCGATTTGGTGACCTTGATCGATTTCTC
AGAGCTGGTCGATGATACTGTAGGAAGCGACATACTGGAAGAGGATTCAC
CCAAATCCGAATCATCAGTACATGAGCTCTGCAATGGTTGGGATTCTTTA
CGAATCAGCATAGGAGACACATGTTTCGAAGACAATGGTGCGTCTTCCCG
TTGAGGAAATTCAATAAGCCGGCGCGATTTGGGAGGCGTTTTTAAAGATG
TGTCCCCCACATCTTTGTCTTTAGTGGGTTCGATCAAGTTCAGATCACTG
AAAAGGCTTTGAATCCTGGGACTCTTAATCATGTTCGTCGTTGTGGCTGA
TGGATTGCCGTCGAAAACTTCAGTTGAATCTGTGGAGACTTGGCTAGTAC
TAGGCATCTGAGTTTTGGGATAATTTTCAATATCTTTGATTTTTCCCGCC
GTTTTCTTAATATTCTTTCCTTTTTTCTGATTCATCTTCGACATTCCAGC
TGTGTTTTTTGCCTGCACCGACT
BO12577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10683-PA | 1257 | rhi-RA | 350..1254 | 923..19 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-RA | 1570 | CG10683-RA | 390..1294 | 923..19 | 4525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17632484..17633127 | 280..923 | 3220 | 100 | Plus |
| 2R | 25286936 | 2R | 17631973..17632233 | 19..279 | 1305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:07:34 has no hits.
BO12577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:48 Download gff for
BO12577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-PA | 350..1257 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:01 Download gff for
BO12577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10683-PA | 350..1257 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:43:06 Download gff for
BO12577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 390..1307 | 6..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:26:05 Download gff for
BO12577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 390..1307 | 6..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:26:05 Download gff for
BO12577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17631960..17632233 | 6..279 | 98 | <- | Plus |
| 2R | 17632484..17633127 | 280..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:43:06 Download gff for
BO12577.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13519465..13519738 | 6..279 | 98 | <- | Plus |
| arm_2R | 13519989..13520632 | 280..923 | 100 | | Plus |
BO12577.5prime Sequence
911 bp (844 high quality bases) assembled on 2006-05-08
> BO12577.5prime
GAAGTTATCAGTCGACATGTCTCGCAACCATCAGCGACCAAATCTTGGTC
TGGTCGATGCACCGCCTAATGATCATGTCGAAGAATATGTAGTGGAGAAA
ATCTTAGGCAAACGGTTTGTTAATGGGCGTCCCCAGGTTCTGGTGAAGTG
GAGCGGTTTTCCGAACGAGAACAACACCTGGGAACCATTGGAAAACGTAG
GCAACTGCATGAAGCTGGTCTCCGACTTCGAGTCGGAGGTCTTCAGGCTG
CATCGGAAGGCCGCGGCTAAATCTGTCGGGAAATCGAAGTCAAGTCCTAG
CAGCAGCGGTCCATTGATCACCGAGAATGGCCCCAGCAGCTCTAAGAAAA
CACAACAACATTCCAAGTCGGTGCAGGCAAAAAACACAGCTGGAATGTCG
AAGATGAATCAGAAAAAAGGAAAGAATATTAAGAAAACGGCGGGAAAAAT
CAAAGATATTGAAAATTATCCCAAAACTCAGATGCCTAGTACTAGCCAAG
TCTCCACAGATTCAACTGAAGTTTTCGACGGCAATCCATCAGCCACAACG
ACGAACATGATTAAGAGTCCCAGGATTCAAAGCCTTTTCAGTGATCTGAA
CTTGATCGAACCCACTAAAGACAAAGATGTGGGGGACACATCTTTAAAAA
CGCCTCCCAAATCGCGCCGGCTTATTGAATTTCCTCAACGGGAAGACGCA
CCATTGTCTTCGAAACATGTGTCTCCTATGCTGATTCGTAAAGAATCCCA
ACCATTGCAGAGCTCATGTACTGATGATTCGGATTTGGGTGAATCCTCTT
CCAGTATGTCGCTTCCTACAGTATCATCGACCAGCTCTGAGAAATCGATC
AAGGTCACCAAATCGGAACCTAAAACGCTCGGCCAGATAAAGTTTTCGTC
TAGGTCATCCG
BO12577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10683-PA | 1257 | rhi-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-RA | 1570 | CG10683-RA | 41..935 | 17..911 | 4475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17632582..17633476 | 911..17 | 4475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:11:52 has no hits.
BO12577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:49 Download gff for
BO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:03 Download gff for
BO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10683-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:20 Download gff for
BO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 37..935 | 10..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:03:44 Download gff for
BO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 37..935 | 10..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:03:44 Download gff for
BO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17632582..17633480 | 10..911 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:20 Download gff for
BO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13520087..13520985 | 10..911 | 99 | | Minus |
BO12577.complete Sequence
1288 bp assembled on 2006-10-11
GenBank Submission: FJ632496
> BO12577.complete
GAAGTTATCAGTCGACATGTCTCGCAACCATCAGCGACCAAATCTTGGTC
TGGTCGATGCACCGCCTAATGATCATGTCGAAGAATATGTAGTGGAGAAA
ATCTTAGGCAAACGGTTTGTTAATGGGCGTCCCCAGGTTCTGGTGAAGTG
GAGCGGTTTTCCGAACGAGAACAACACCTGGGAACCATTGGAAAACGTAG
GCAACTGCATGAAGCTGGTCTCCGACTTCGAGTCGGAGGTCTTCAGGCTG
CATCGGAAGGCCGCGGCTAAATCTGTCGGGAAATCGAAGTCAAGTCCTAG
CAGCAGCGGTCCATTGATCACCGAGAATGGCCCCAGCAGCTCTAAGAAAA
CACAACAACATTCCAAGTCGGTGCAGGCAAAAAACACAGCTGGAATGTCG
AAGATGAATCAGAAAAAAGGAAAGAATATTAAGAAAACGGCGGGAAAAAT
CAAAGATATTGAAAATTATCCCAAAACTCAGATGCCTAGTACTAGCCAAG
TCTCCACAGATTCAACTGAAGTTTTCGACGGCAATCCATCAGCCACAACG
ACGAACATGATTAAGAGTCCCAGGATTCAAAGCCTTTTCAGTGATCTGAA
CTTGATCGAACCCACTAAAGACAAAGATGTGGGGGACACATCTTTAAAAA
CGCCTCCCAAATCGCGCCGGCTTATTGAATTTCCTCAACGGGAAGACGCA
CCATTGTCTTCGAAACATGTGTCTCCTATGCTGATTCGTAAAGAATCCCA
ACCATTGCAGAGCTCATGTACTGATGATTCGGATTTGGGTGAATCCTCTT
CCAGTATGTCGCTTCCTACAGTATCATCGACCAGCTCTGAGAAATCGATC
AAGGTCACCAAATCGGAACCTAAAACGCTCGGCCAGATAAAGTTTTCGTC
TAGGTCATCCGATGGTGGTCATGCGGCTTCATCGCTGGGCGCACCAAAAG
AAGGGGACATTGGCTTGGATTTATCTGGCAGTGATTCCATGGATTCCGAA
GTGGAGAGCATGCGCCGCTGTCCGCGCCGCAAGCGTAAAAAAACTTACCC
GGATTGGAAATTCCCGGAGATGACGAAACCCTTCGGTGTGAATCGCGGAC
TGGATCTGGATAAAATTCTCCACTGCTACCAGATGAATGACGATCTATTC
ATGTTTGTCACGTGGAAGGGCTGCTCGTCCATCGATGCAGTGCATATTAA
TGACATTAAGGAAGCGTATCCATTGCAGATAATTAAGTACTTCGAGAGCT
TGAGGATCATTGTGCCCAAGGCAAGCTTTCTAGACCAT
BO12577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-RA | 1257 | CG10683-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-RA | 1570 | CG10683-RA | 41..1294 | 17..1270 | 6270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17632484..17633476 | 1009..17 | 4965 | 100 | Minus |
| 2R | 25286936 | 2R | 17631973..17632233 | 1270..1010 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:11:08 has no hits.
BO12577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:26 Download gff for
BO12577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 1..1257 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:23 Download gff for
BO12577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 34..1304 | 10..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:30 Download gff for
BO12577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 41..1294 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:26 Download gff for
BO12577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 34..1304 | 10..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:36 Download gff for
BO12577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rhi-RA | 41..1294 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:36 Download gff for
BO12577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17631971..17632233 | 1010..1272 | 99 | <- | Minus |
| 2R | 17632484..17633476 | 17..1009 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:30 Download gff for
BO12577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13519476..13519738 | 1010..1272 | 99 | <- | Minus |
| arm_2R | 13519989..13520981 | 17..1009 | 100 | | Minus |
BO12577.pep Sequence
Translation from 16 to 1288
> BO12577.pep
MSRNHQRPNLGLVDAPPNDHVEEYVVEKILGKRFVNGRPQVLVKWSGFPN
ENNTWEPLENVGNCMKLVSDFESEVFRLHRKAAAKSVGKSKSSPSSSGPL
ITENGPSSSKKTQQHSKSVQAKNTAGMSKMNQKKGKNIKKTAGKIKDIEN
YPKTQMPSTSQVSTDSTEVFDGNPSATTTNMIKSPRIQSLFSDLNLIEPT
KDKDVGDTSLKTPPKSRRLIEFPQREDAPLSSKHVSPMLIRKESQPLQSS
CTDDSDLGESSSSMSLPTVSSTSSEKSIKVTKSEPKTLGQIKFSSRSSDG
GHAASSLGAPKEGDIGLDLSGSDSMDSEVESMRRCPRRKRKKTYPDWKFP
EMTKPFGVNRGLDLDKILHCYQMNDDLFMFVTWKGCSSIDAVHINDIKEA
YPLQIIKYFESLRIIVPKASFLDH
BO12577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rhi-PA | 418 | CG10683-PA | 1..418 | 1..418 | 2166 | 100 | Plus |
| Oxp-PA | 84 | CG18186-PA | 7..79 | 9..81 | 215 | 52.1 | Plus |
| Su(var)205-PB | 206 | CG8409-PB | 1..121 | 1..126 | 163 | 33.1 | Plus |
| Su(var)205-PA | 206 | CG8409-PA | 1..121 | 1..126 | 163 | 33.1 | Plus |
| HP1b-PB | 240 | CG7041-PB | 3..106 | 23..126 | 151 | 33 | Plus |
