Clone Sequence Records
BO12578.3prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO12578.3prime
ATGGTCTAGAAAGCTTGCAGCCTTGATTTTGGCGGGTATCTGGAAGCAGG
CCGCATCCCCATGCTTATCGCCCAATCCCCAGTGGATCTCCAAACTGACG
GTCGGGTAGACGGGCAGGATCTTGAAGCTGTTCTTGTAGGTGTACACCTG
GCCGGCCTTCAGTGGGCAGCCCACCTTCTTCTCGCCAGCCTCGTCGTAGA
TGTGCGGACAGGCGCTGGTGCCGTAATATCCTGGGAACGGCAGCGGCACG
TCCAGGATAATGCCCTGGATGTCGGAGGTCAGCTCCTGGAAGTCGCGCTC
CGGCCGGATCTTCATCTGAATGCTGGCCTCCGTGTTGCGCTTCAGGATGC
ACTTGCTCTTGGGGCAATTGGAAATGGAGACGTCACCGGCAGCTAGGGCC
TTCGATTTGGATTTCGGGCACTGACTCACATCCGTGGACGACGTGAAGCC
GATCAAAGCGGCGAAGATCACAAATAATCCTAAGCTCAGCTTCATGTCGA
CTGATAACT
BO12578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3153-PB | 480 | CG3153-RB | 1..477 | 495..19 | 2385 | 100 | Minus |
CG3153-PA | 480 | CG3153-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-RA | 839 | CG3153-RA | 138..614 | 495..19 | 2385 | 100 | Minus |
Npc2b-RB | 804 | CG3153-RB | 103..579 | 495..19 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14091809..14092200 | 410..19 | 1960 | 100 | Minus |
3R | 32079331 | 3R | 14091317..14091401 | 495..411 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:45:19 has no hits.
BO12578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:50 Download gff for
BO12578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-PA | 1..480 | 15..495 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:03 Download gff for
BO12578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-PA | 1..480 | 15..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:51:33 Download gff for
BO12578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 94..582 | 15..505 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:14 Download gff for
BO12578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 94..582 | 15..505 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:14 Download gff for
BO12578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14091308..14091401 | 411..505 | 96 | -> | Minus |
3R | 14091809..14092203 | 15..410 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:51:33 Download gff for
BO12578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9917030..9917123 | 411..505 | 96 | -> | Minus |
arm_3R | 9917531..9917925 | 15..410 | 99 | | Minus |
BO12578.5prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO12578.5prime
GAAGTTATCAGTCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCG
CCGCTTTGATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAA
TCCAAATCGAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCC
CAAGAGCAAGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGA
AGATCCGGCCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGC
ATTATCCTGGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGC
CTGTCCGCACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCAC
TGAAGGCCGGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCC
GTCTACCCGACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCA
TGGGGATGCGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTGCAAGCT
TTCTAGACC
BO12578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3153-PB | 480 | CG3153-RB | 1..477 | 17..493 | 2385 | 100 | Plus |
CG3153-PA | 480 | CG3153-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-RA | 839 | CG3153-RA | 138..614 | 17..493 | 2385 | 100 | Plus |
Npc2b-RB | 804 | CG3153-RB | 103..579 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14091809..14092200 | 102..493 | 1960 | 100 | Plus |
3R | 32079331 | 3R | 14091317..14091401 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:27:58 has no hits.
BO12578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:51 Download gff for
BO12578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-PA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:05 Download gff for
BO12578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-PA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:55 Download gff for
BO12578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 94..582 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:13 Download gff for
BO12578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 94..582 | 7..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:13 Download gff for
BO12578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14091308..14091401 | 7..101 | 96 | -> | Plus |
3R | 14091809..14092203 | 102..497 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:55 Download gff for
BO12578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9917030..9917123 | 7..101 | 96 | -> | Plus |
arm_3R | 9917531..9917925 | 102..497 | 99 | | Plus |
BO12578.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ632497
> BO12578.complete
GAAGTTATCAGTCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCG
CCGCTTTGATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAA
TCCAAATCGAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCC
CAAGAGCAAGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGA
AGATCCGGCCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGC
ATTATCCTGGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGC
CTGTCCGCACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCAC
TGAAGGCCGGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCC
GTCTACCCGACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCA
TGGGGATGCGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTGCAAGCT
TTCTAGACCAT
BO12578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-RA | 480 | CG3153-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Npc2b-RB | 480 | CG3153-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-RA | 839 | CG3153-RA | 138..614 | 17..493 | 2385 | 100 | Plus |
Npc2b-RB | 804 | CG3153-RB | 103..579 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14091809..14092200 | 102..493 | 1960 | 100 | Plus |
3R | 32079331 | 3R | 14091317..14091401 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:37:41 has no hits.
BO12578.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:27 Download gff for
BO12578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-RA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:24 Download gff for
BO12578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-RA | 117..605 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:21:57 Download gff for
BO12578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 103..579 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:28 Download gff for
BO12578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3153-RA | 117..605 | 7..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:46 Download gff for
BO12578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2b-RB | 103..579 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:46 Download gff for
BO12578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14091317..14091401 | 17..101 | 100 | -> | Plus |
3R | 14091809..14092200 | 102..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:21:57 Download gff for
BO12578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9917039..9917123 | 17..101 | 100 | -> | Plus |
arm_3R | 9917531..9917922 | 102..495 | 99 | | Plus |
BO12578.pep Sequence
Translation from 16 to 511
> BO12578.pep
MKLSLGLFVIFAALIGFTSSTDVSQCPKSKSKALAAGDVSISNCPKSKCI
LKRNTEASIQMKIRPERDFQELTSDIQGIILDVPLPFPGYYGTSACPHIY
DEAGEKKVGCPLKAGQVYTYKNSFKILPVYPTVSLEIHWGLGDKHGDAAC
FQIPAKIKAASFLDH
BO12578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2b-PA | 159 | CG3153-PA | 1..159 | 1..159 | 836 | 100 | Plus |
Npc2b-PB | 159 | CG3153-PB | 1..159 | 1..159 | 836 | 100 | Plus |
Npc2a-PA | 148 | CG7291-PA | 10..148 | 12..158 | 178 | 32.7 | Plus |