Clone BO12578 Report

Search the DGRC for BO12578

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2b-RA
Protein status:BO12578.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO12578.3prime Sequence

509 bp (508 high quality bases) assembled on 2006-05-08

> BO12578.3prime
ATGGTCTAGAAAGCTTGCAGCCTTGATTTTGGCGGGTATCTGGAAGCAGG
CCGCATCCCCATGCTTATCGCCCAATCCCCAGTGGATCTCCAAACTGACG
GTCGGGTAGACGGGCAGGATCTTGAAGCTGTTCTTGTAGGTGTACACCTG
GCCGGCCTTCAGTGGGCAGCCCACCTTCTTCTCGCCAGCCTCGTCGTAGA
TGTGCGGACAGGCGCTGGTGCCGTAATATCCTGGGAACGGCAGCGGCACG
TCCAGGATAATGCCCTGGATGTCGGAGGTCAGCTCCTGGAAGTCGCGCTC
CGGCCGGATCTTCATCTGAATGCTGGCCTCCGTGTTGCGCTTCAGGATGC
ACTTGCTCTTGGGGCAATTGGAAATGGAGACGTCACCGGCAGCTAGGGCC
TTCGATTTGGATTTCGGGCACTGACTCACATCCGTGGACGACGTGAAGCC
GATCAAAGCGGCGAAGATCACAAATAATCCTAAGCTCAGCTTCATGTCGA
CTGATAACT

BO12578.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3153-PB 480 CG3153-RB 1..477 495..19 2385 100 Minus
CG3153-PA 480 CG3153-RA 1..477 495..19 2385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-RA 839 CG3153-RA 138..614 495..19 2385 100 Minus
Npc2b-RB 804 CG3153-RB 103..579 495..19 2385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14091809..14092200 410..19 1960 100 Minus
3R 32079331 3R 14091317..14091401 495..411 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:45:19 has no hits.

BO12578.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:50 Download gff for BO12578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3153-PA 1..480 15..495 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:03 Download gff for BO12578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3153-PA 1..480 15..495 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:51:33 Download gff for BO12578.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 94..582 15..505 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:14 Download gff for BO12578.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 94..582 15..505 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:14 Download gff for BO12578.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14091308..14091401 411..505 96 -> Minus
3R 14091809..14092203 15..410 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:51:33 Download gff for BO12578.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9917030..9917123 411..505 96 -> Minus
arm_3R 9917531..9917925 15..410 99   Minus

BO12578.5prime Sequence

509 bp (508 high quality bases) assembled on 2006-05-08

> BO12578.5prime
GAAGTTATCAGTCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCG
CCGCTTTGATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAA
TCCAAATCGAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCC
CAAGAGCAAGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGA
AGATCCGGCCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGC
ATTATCCTGGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGC
CTGTCCGCACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCAC
TGAAGGCCGGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCC
GTCTACCCGACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCA
TGGGGATGCGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTGCAAGCT
TTCTAGACC

BO12578.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3153-PB 480 CG3153-RB 1..477 17..493 2385 100 Plus
CG3153-PA 480 CG3153-RA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-RA 839 CG3153-RA 138..614 17..493 2385 100 Plus
Npc2b-RB 804 CG3153-RB 103..579 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14091809..14092200 102..493 1960 100 Plus
3R 32079331 3R 14091317..14091401 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:27:58 has no hits.

BO12578.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:51 Download gff for BO12578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3153-PA 1..480 17..497 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:05 Download gff for BO12578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3153-PA 1..480 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:33:55 Download gff for BO12578.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 94..582 7..497 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:04:13 Download gff for BO12578.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 94..582 7..497 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:04:13 Download gff for BO12578.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14091308..14091401 7..101 96 -> Plus
3R 14091809..14092203 102..497 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:33:55 Download gff for BO12578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9917030..9917123 7..101 96 -> Plus
arm_3R 9917531..9917925 102..497 99   Plus

BO12578.complete Sequence

511 bp assembled on 2006-10-11

GenBank Submission: FJ632497

> BO12578.complete
GAAGTTATCAGTCGACATGAAGCTGAGCTTAGGATTATTTGTGATCTTCG
CCGCTTTGATCGGCTTCACGTCGTCCACGGATGTGAGTCAGTGCCCGAAA
TCCAAATCGAAGGCCCTAGCTGCCGGTGACGTCTCCATTTCCAATTGCCC
CAAGAGCAAGTGCATCCTGAAGCGCAACACGGAGGCCAGCATTCAGATGA
AGATCCGGCCGGAGCGCGACTTCCAGGAGCTGACCTCCGACATCCAGGGC
ATTATCCTGGACGTGCCGCTGCCGTTCCCAGGATATTACGGCACCAGCGC
CTGTCCGCACATCTACGACGAGGCTGGCGAGAAGAAGGTGGGCTGCCCAC
TGAAGGCCGGCCAGGTGTACACCTACAAGAACAGCTTCAAGATCCTGCCC
GTCTACCCGACCGTCAGTTTGGAGATCCACTGGGGATTGGGCGATAAGCA
TGGGGATGCGGCCTGCTTCCAGATACCCGCCAAAATCAAGGCTGCAAGCT
TTCTAGACCAT

BO12578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-RA 480 CG3153-PA 1..477 17..493 2385 100 Plus
Npc2b-RB 480 CG3153-PB 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-RA 839 CG3153-RA 138..614 17..493 2385 100 Plus
Npc2b-RB 804 CG3153-RB 103..579 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14091809..14092200 102..493 1960 100 Plus
3R 32079331 3R 14091317..14091401 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:37:41 has no hits.

BO12578.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:27 Download gff for BO12578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3153-RA 1..480 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:24 Download gff for BO12578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3153-RA 117..605 7..497 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:21:57 Download gff for BO12578.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 103..579 17..495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:28 Download gff for BO12578.complete
Subject Subject Range Query Range Percent Splice Strand
CG3153-RA 117..605 7..497 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:46 Download gff for BO12578.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2b-RB 103..579 17..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:46 Download gff for BO12578.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14091317..14091401 17..101 100 -> Plus
3R 14091809..14092200 102..495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:21:57 Download gff for BO12578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9917039..9917123 17..101 100 -> Plus
arm_3R 9917531..9917922 102..495 99   Plus

BO12578.pep Sequence

Translation from 16 to 511

> BO12578.pep
MKLSLGLFVIFAALIGFTSSTDVSQCPKSKSKALAAGDVSISNCPKSKCI
LKRNTEASIQMKIRPERDFQELTSDIQGIILDVPLPFPGYYGTSACPHIY
DEAGEKKVGCPLKAGQVYTYKNSFKILPVYPTVSLEIHWGLGDKHGDAAC
FQIPAKIKAASFLDH

BO12578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2b-PA 159 CG3153-PA 1..159 1..159 836 100 Plus
Npc2b-PB 159 CG3153-PB 1..159 1..159 836 100 Plus
Npc2a-PA 148 CG7291-PA 10..148 12..158 178 32.7 Plus