Clone Sequence Records
BO12581.3prime Sequence
644 bp (643 high quality bases) assembled on 2006-05-08
> BO12581.3prime
ATGGTCTAGAAAGCTTGCTTTCACAGCATTTATTGAACTCTCAGGCAGAA
CTTTAGCCACTTTCCGTGGCTCCTTGATCGTGGTCTGGGGGCACTGCATC
TCGCTCCAGCCGACCGGCACCATGGGCACCCGGGTCTTCCGGTAATCACT
GGCATAGGCGATGACCACGCCGAGTTCATTTTCGGCGGTGGTCAGGAGGA
AGGACTGCTCCAGTTGGTTAATGACCCTCGCCAGGATGACATCGCCCGGC
CGGAAGGACTTGTAGATATCGACGCGATCTTTTTCGGTCTCCCGGACATC
CTCCTTGCGCAGAAGTCCGCGGTAGCTGCTTTCCAGCAGCACATTTCGTA
CGCAGAAAATGGCGCACTTGGCGAATTTTGGAGTTGTGACGAGAACTCTG
GCTGTGACCACGTCTCCGGTGGCTGGGATGGTTAGATGAAATCCGGGCTT
ATGCACACTAACCACCTGGCATTTATCACCCGAATCTTCGATGTTGACAA
TTCCAGACTTGGAGGCGTAAATGTAGCCATTCTGCTCGTAGGTGCCTATG
CCCAGGACTATGCTGTCCTCGGTTCTGCAGAGTCGCTCCCCGGGCAGGCA
GACTACAGTCTCATCCTGCTGTTCACTCATGTCGACTGATAACT
BO12581.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6249-PA | 615 | Csl4-RA | 1..612 | 630..19 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-RA | 940 | CG6249-RA | 98..709 | 630..19 | 3060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11122805..11123257 | 19..471 | 2265 | 100 | Plus |
| 2L | 23513712 | 2L | 11123312..11123470 | 472..630 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:44:25 has no hits.
BO12581.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:54 Download gff for
BO12581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:09 Download gff for
BO12581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6249-PA | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:38 Download gff for
BO12581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 105..720 | 14..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:11 Download gff for
BO12581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 98..713 | 14..630 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:11 Download gff for
BO12581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11122801..11123257 | 14..471 | 99 | <- | Plus |
| 2L | 11123312..11123470 | 472..630 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:38 Download gff for
BO12581.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11122801..11123257 | 14..471 | 99 | <- | Plus |
| arm_2L | 11123312..11123470 | 472..630 | 100 | | Plus |
BO12581.5prime Sequence
644 bp (643 high quality bases) assembled on 2006-05-08
> BO12581.5prime
GAAGTTATCAGTCGACATGAGTGAACAGCAGGATGAGACTGTAGTCTGCC
TGCCCGGGGAGCGACTCTGCAGAACCGAGGACAGCATAGTCCTGGGCATA
GGCACCTACGAGCAGAATGGCTACATTTACGCCTCCAAGTCTGGAATTGT
CAACATCGAAGATTCGGGTGATAAATGCCAGGTGGTTAGTGTGCATAAGC
CCGGATTTCATCTAACCATCCCAGCCACCGGAGACGTGGTCACAGCCAGA
GTTCTCGTCACAACTCCAAAATTCGCCAAGTGCGCCATTTTCTGCGTACG
AAATGTGCTGCTGGAAAGCAGCTACCGCGGACTTCTGCGCAAGGAGGATG
TCCGGGAGACCGAAAAAGATCGCGTCGATATCTACAAGTCCTTCCGGCCG
GGCGATGTCATCCTGGCGAGGGTCATTAACCAACTGGAGCAGTCCTTCCT
CCTGACCACCGCCGAAAATGAACTCGGCGTGGTCATCGCCTATGCCAGTG
ATTACCGGAAGACCCGGGTGCCCATGGTGCCGGTCGGCTGGAGCGAGATG
CAGTGCCCCCAGACCACGATCAAGGAGCCACGGAAAGTGGCTAAAGTTCT
GCCTGAGAGTTCAATAAATGCTGTGAAAGCAAGCTTTCTAGACC
BO12581.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6249-PA | 615 | Csl4-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-RA | 940 | CG6249-RA | 98..709 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11122805..11123257 | 628..176 | 2265 | 100 | Minus |
| 2L | 23513712 | 2L | 11123312..11123470 | 175..17 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:36:44 has no hits.
BO12581.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:39:55 Download gff for
BO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:10 Download gff for
BO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6249-PA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:31 Download gff for
BO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 105..720 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:25:20 Download gff for
BO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 98..713 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:25:20 Download gff for
BO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11122801..11123257 | 176..633 | 99 | <- | Minus |
| 2L | 11123312..11123470 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:31 Download gff for
BO12581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11122801..11123257 | 176..633 | 99 | <- | Minus |
| arm_2L | 11123312..11123470 | 17..175 | 100 | | Minus |
BO12581.complete Sequence
646 bp assembled on 2006-10-11
GenBank Submission: FJ632498
> BO12581.complete
GAAGTTATCAGTCGACATGAGTGAACAGCAGGATGAGACTGTAGTCTGCC
TGCCCGGGGAGCGACTCTGCAGAACCGAGGACAGCATAGTCCTGGGCATA
GGCACCTACGAGCAGAATGGCTACATTTACGCCTCCAAGTCTGGAATTGT
CAACATCGAAGATTCGGGTGATAAATGCCAGGTGGTTAGTGTGCATAAGC
CCGGATTTCATCTAACCATCCCAGCCACCGGAGACGTGGTCACAGCCAGA
GTTCTCGTCACAACTCCAAAATTCGCCAAGTGCGCCATTTTCTGCGTACG
AAATGTGCTGCTGGAAAGCAGCTACCGCGGACTTCTGCGCAAGGAGGATG
TCCGGGAGACCGAAAAAGATCGCGTCGATATCTACAAGTCCTTCCGGCCG
GGCGATGTCATCCTGGCGAGGGTCATTAACCAACTGGAGCAGTCCTTCCT
CCTGACCACCGCCGAAAATGAACTCGGCGTGGTCATCGCCTATGCCAGTG
ATTACCGGAAGACCCGGGTGCCCATGGTGCCGGTCGGCTGGAGCGAGATG
CAGTGCCCCCAGACCACGATCAAGGAGCCACGGAAAGTGGCTAAAGTTCT
GCCTGAGAGTTCAATAAATGCTGTGAAAGCAAGCTTTCTAGACCAT
BO12581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-RA | 615 | CG6249-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-RA | 940 | CG6249-RA | 98..709 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11122805..11123257 | 628..176 | 2265 | 100 | Minus |
| 2L | 23513712 | 2L | 11123312..11123470 | 175..17 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:32 has no hits.
BO12581.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:44:36 Download gff for
BO12581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:58:31 Download gff for
BO12581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 263..878 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:17 Download gff for
BO12581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 105..716 | 17..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:44:36 Download gff for
BO12581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 263..878 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:21 Download gff for
BO12581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Csl4-RA | 98..709 | 17..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:21 Download gff for
BO12581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11122803..11123257 | 176..630 | 99 | <- | Minus |
| 2L | 11123312..11123470 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:17 Download gff for
BO12581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11122803..11123257 | 176..630 | 99 | <- | Minus |
| arm_2L | 11123312..11123470 | 17..175 | 100 | | Minus |
BO12581.pep Sequence
Translation from 16 to 646
> BO12581.pep
MSEQQDETVVCLPGERLCRTEDSIVLGIGTYEQNGYIYASKSGIVNIEDS
GDKCQVVSVHKPGFHLTIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLE
SSYRGLLRKEDVRETEKDRVDIYKSFRPGDVILARVINQLEQSFLLTTAE
NELGVVIAYASDYRKTRVPMVPVGWSEMQCPQTTIKEPRKVAKVLPESSI
NAVKASFLDH
BO12581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Csl4-PA | 204 | CG6249-PA | 1..204 | 1..204 | 1045 | 100 | Plus |
