Clone BO12590 Report

Search the DGRC for BO12590

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG32269-RA
Protein status:BO12590.pep: validated full length
Sequenced Size:1030

Clone Sequence Records

BO12590.3prime Sequence

883 bp (813 high quality bases) assembled on 2006-05-08

> BO12590.3prime
ATGGTCTAGAAAGCTTGCATTGTTGGCCATGATGTTGGTGGCCCACTGGC
GGATCGCAACCACGGCTGTGTATACACCTGGGTAGCCGGCTCTGGCGCAC
CCGTAGCCAAAGGATACGATGCCCAAGAGTGTGTTGTTCCTGGTCACTGG
GCCACCGGAGTCTCCGCTGCATGAATCCTTGCCAGCAGCGCGGGCACAAA
GCATGTACTTGGTGATGGTAGCCTGACCGCGGTAGTCCTTCCGACACTTT
TGCTGCCTGACCACCCTTATCTGGGCGGTCTGCAGAGTTTTGGATGCCGT
TGTAGAACCTTCCTTGGTCACACCCCATCCTGCAATGCGTACCCTTGAAC
CGGCCTTGGGTCGATAGTTGCCCATTGATATGGTTCCGATATTGGTGCCC
GTCAGGGATTGGTTCAGCTTCAGCAAAGCTGCATCCATGTTCATTTTCTT
CGAGGTGAACTTCGGAGCCACATGAATGGAACTGACGGAGCGAGTGACGC
CATCACTCCCATCCAAAGTAGTGGTTCCTCCGCGCACCGTGAAATCGGAG
GCACTGTATCCCTTGACGCAATGGGCAGCAGTTAGAACCCATTGCTCGGT
TATGAGGGAACCGCTACACAGATTCGATCCTCGACGCAACTGAACAATGT
ACGGTGTGGTGGAAATAGTGGTACTGGTGCCACCCACAATCCTGGACTGA
ATCTTGGACGATGTGGCGGCCTTTTTGTTCTGGTTGACCCTCTTGGCGGA
GAGTTTCCTCGCTGTACCTTGGCGTCGATTGCTTCTGATTCCGGTTTGGT
TTTTTGTGCCCGTCAACCTCTTGGTTCCGTTGTCGCTTCTCAGTCTCCTG
TTTCTCCTTTTGCTGATTGGCTGTCACCGCTTT

BO12590.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32269-PA 999 CG32269-RA 155..996 860..19 4210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32270-RA 2037 CG32270-RA 1098..1960 882..19 4295 99.9 Minus
CG32269-RB 1195 CG32269-RB 256..1118 882..19 4295 99.9 Minus
CG32269-RA 2037 CG32269-RA 1098..1960 882..19 4295 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3207026..3207888 19..882 4270 99.9 Plus
Blast to na_te.dros performed on 2015-02-08 13:00:40 has no hits.

BO12590.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:09 Download gff for BO12590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32269-PA 133..999 16..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:29 Download gff for BO12590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32269-PA 133..999 16..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:11 Download gff for BO12590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32270-RA 1097..1968 11..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:24 Download gff for BO12590.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32269-RA 1097..1968 11..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:24 Download gff for BO12590.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3207018..3207888 11..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:11 Download gff for BO12590.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3207018..3207888 11..883 99   Plus

BO12590.5prime Sequence

911 bp (787 high quality bases) assembled on 2006-05-08

> BO12590.5prime
GAAGTTATCAGTCGACATGTTTTGCCGAATATCCGGCAATAAAAGCCGGG
GCAAGGTCATAGCCAAAACAGTTCACAGCGATATGCTTTGGCGCTGCGAG
TATCTTATTTTGGGAATGCTGCTCTTGGCCGAGCTTACCCAGTTGGGTGA
AGCGGTGACAGCCAATCAGCAAAGGAGAAACAGGAGACTGAGAAGCGACA
ACGGAACCAAGAGGTTGACGGGCACAAAAAACCAAACCGGAATCAGAAGC
AATCGACGCCAAGGTACAGCGAGGAAACTCTCCGCCAAGAGGGTCAACCA
GAACAAAAAGGCCGCCACATCGTCCAAGATTCAGTCCAGGATTGTGGGTG
GCACCAGTACCACTATTTCCACCACACCGTACATTGTTCAGTTGCGTCGA
GGATCGAATCTGTGTAGCGGTTCCCTCATAACCGAGCAATGGGTTCTAAC
TGCTGCCCATTGCGTCAAGGGATACAGTGCCTCCGATTTCACGGTGCGCG
GAGGAACCACTACTTTGGATGGGAGTGATGGCGTCACTCGCTCCGTCAGT
TCCATTCATGTGGCTCCGAAGTTCACCTCGAAGAAAATGAACATGGATGC
AGCTTTGCTGAAGCTGAACCAATCCCTGACGGGCACCAATATCGGAACCA
TATCAATGGGCAACTATCGACCCAAGGCCGGTTCAAGGGTACGCATTGCA
GGATGGGGTGTGACCAAGGAAGGTTCTACAACGGCATCCAAAACTCTGCA
GACCGCCCAGATAAGGGTGGTCAGGCAGCAAAAGTGTCGGAAGGACTACC
GCGGTCAGGCTACCATCACCAAGTACATGCTTTGTGCCCGCGCTGCTGGC
AAGGATTTCTGCAGCGGAGACTCCGGTGGCCCAGTGACCAGGACAACACA
CTCTTGGGCAT

BO12590.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32269-PA 999 CG32269-RA 1..877 17..893 4335 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32270-RA 2037 CG32270-RA 965..1860 17..911 4425 99.7 Plus
CG32269-RB 1195 CG32269-RB 123..1018 17..911 4425 99.7 Plus
CG32269-RA 2037 CG32269-RA 965..1860 17..911 4425 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3207126..3208021 911..17 4400 99.7 Minus
Blast to na_te.dros performed on 2015-02-02 10:51:20 has no hits.

BO12590.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:10 Download gff for BO12590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32269-PA 1..896 17..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:31 Download gff for BO12590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32269-PA 1..896 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:43 Download gff for BO12590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32270-RA 958..1860 6..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:26:18 Download gff for BO12590.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32269-RA 958..1860 6..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:26:18 Download gff for BO12590.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3207126..3208028 6..911 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:43 Download gff for BO12590.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3207126..3208028 6..911 99   Minus

BO12590.complete Sequence

1030 bp assembled on 2006-10-11

GenBank Submission: FJ632499

> BO12590.complete
GAAGTTATCAGTCGACATGTTTTGCCGAATATCCGGCAATAAAAGCCGGG
GCAAGGTCATAGCCAAAACAGTTCACAGCGATATGCTTTGGCGCTGCGAG
TATCTTATTTTGGGAATGCTGCTCTTGGCCGAGCTTACCCAGTTGGGTGA
AGCGGTGACAGCCAATCAGCAAAGGAGAAACAGGAGACTGAGAAGCGACA
ACGGAACCAAGAGGTTGACGGGCACAAAAAACCAAACCGGAATCAGAAGC
AATCGACGCCAAGGTACAGCGAGGAAACTCTCCGCCAAGAGGGTCAACCA
GAACAAAAAGGCCGCCACATCGTCCAAGATTCAGTCCAGGATTGTGGGTG
GCACCAGTACCACTATTTCCACCACACCGTACATTGTTCAGTTGCGTCGA
GGATCGAATCTGTGTAGCGGTTCCCTCATAACCGAGCAATGGGTTCTAAC
TGCTGCCCATTGCGTCAAGGGATACAGTGCCTCCGATTTCACGGTGCGCG
GAGGAACCACTACTTTGGATGGGAGTGATGGCGTCACTCGCTCCGTCAGT
TCCATTCATGTGGCTCCGAAGTTCACCTCGAAGAAAATGAACATGGATGC
AGCTTTGCTGAAGCTGAACCAATCCCTGACGGGCACCAATATCGGAACCA
TATCAATGGGCAACTATCGACCCAAGGCCGGTTCAAGGGTACGCATTGCA
GGATGGGGTGTGACCAAGGAAGGTTCTACAACGGCATCCAAAACTCTGCA
GACCGCCCAGATAAGGGTGGTCAGGCAGCAAAAGTGTCGGAAGGACTACC
GCGGTCAGGCTACCATCACCAAGTACATGCTTTGTGCCCGCGCTGCTGGC
AAGGATTCATGCAGCGGAGACTCCGGTGGCCCAGTGACCAGGAACAACAC
ACTCTTGGGCATCGTATCCTTTGGCTACGGGTGCGCCAGAGCCGGCTACC
CAGGTGTATACACAGCCGTGGTTGCGATCCGCCAGTGGGCCACCAACATC
ATGGCCAACAATGCAAGCTTTCTAGACCAT

BO12590.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32269-RB 999 CG32269-PB 1..996 17..1012 4980 100 Plus
CG32269-RA 999 CG32269-PA 1..996 17..1012 4980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32270-RA 2037 CG32270-RA 965..1960 17..1012 4980 100 Plus
CG32269-RB 1195 CG32269-RB 123..1118 17..1012 4980 100 Plus
CG32269-RA 2037 CG32269-RA 965..1960 17..1012 4980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3207026..3208021 1012..17 4980 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:59:01 has no hits.

BO12590.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:11 Download gff for BO12590.complete
Subject Subject Range Query Range Percent Splice Strand
CG32269-RA 1..999 17..1015 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:02 Download gff for BO12590.complete
Subject Subject Range Query Range Percent Splice Strand
CG32270-RA 955..1965 6..1020 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:26 Download gff for BO12590.complete
Subject Subject Range Query Range Percent Splice Strand
CG32270-RA 972..1960 24..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:11 Download gff for BO12590.complete
Subject Subject Range Query Range Percent Splice Strand
CG32270-RA 955..1965 6..1020 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:04 Download gff for BO12590.complete
Subject Subject Range Query Range Percent Splice Strand
CG32269-RA 972..1960 24..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:04 Download gff for BO12590.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3207023..3208014 24..1014 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:26 Download gff for BO12590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3207023..3208014 24..1014 99   Minus

BO12590.pep Sequence

Translation from 16 to 1030

> BO12590.pep
MFCRISGNKSRGKVIAKTVHSDMLWRCEYLILGMLLLAELTQLGEAVTAN
QQRRNRRLRSDNGTKRLTGTKNQTGIRSNRRQGTARKLSAKRVNQNKKAA
TSSKIQSRIVGGTSTTISTTPYIVQLRRGSNLCSGSLITEQWVLTAAHCV
KGYSASDFTVRGGTTTLDGSDGVTRSVSSIHVAPKFTSKKMNMDAALLKL
NQSLTGTNIGTISMGNYRPKAGSRVRIAGWGVTKEGSTTASKTLQTAQIR
VVRQQKCRKDYRGQATITKYMLCARAAGKDSCSGDSGGPVTRNNTLLGIV
SFGYGCARAGYPGVYTAVVAIRQWATNIMANNASFLDH

BO12590.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32269-PB 332 CG32269-PB 1..332 1..332 1697 100 Plus
CG32269-PA 332 CG32269-PA 1..332 1..332 1697 100 Plus
CG3650-PA 249 CG3650-PA 3..242 86..324 516 44.4 Plus
CG33159-PA 257 CG33159-PA 19..243 102..322 466 43.6 Plus
CG33160-PA 258 CG33160-PA 27..258 102..333 456 39.9 Plus