Clone Sequence Records
BO12590.3prime Sequence
883 bp (813 high quality bases) assembled on 2006-05-08
> BO12590.3prime
ATGGTCTAGAAAGCTTGCATTGTTGGCCATGATGTTGGTGGCCCACTGGC
GGATCGCAACCACGGCTGTGTATACACCTGGGTAGCCGGCTCTGGCGCAC
CCGTAGCCAAAGGATACGATGCCCAAGAGTGTGTTGTTCCTGGTCACTGG
GCCACCGGAGTCTCCGCTGCATGAATCCTTGCCAGCAGCGCGGGCACAAA
GCATGTACTTGGTGATGGTAGCCTGACCGCGGTAGTCCTTCCGACACTTT
TGCTGCCTGACCACCCTTATCTGGGCGGTCTGCAGAGTTTTGGATGCCGT
TGTAGAACCTTCCTTGGTCACACCCCATCCTGCAATGCGTACCCTTGAAC
CGGCCTTGGGTCGATAGTTGCCCATTGATATGGTTCCGATATTGGTGCCC
GTCAGGGATTGGTTCAGCTTCAGCAAAGCTGCATCCATGTTCATTTTCTT
CGAGGTGAACTTCGGAGCCACATGAATGGAACTGACGGAGCGAGTGACGC
CATCACTCCCATCCAAAGTAGTGGTTCCTCCGCGCACCGTGAAATCGGAG
GCACTGTATCCCTTGACGCAATGGGCAGCAGTTAGAACCCATTGCTCGGT
TATGAGGGAACCGCTACACAGATTCGATCCTCGACGCAACTGAACAATGT
ACGGTGTGGTGGAAATAGTGGTACTGGTGCCACCCACAATCCTGGACTGA
ATCTTGGACGATGTGGCGGCCTTTTTGTTCTGGTTGACCCTCTTGGCGGA
GAGTTTCCTCGCTGTACCTTGGCGTCGATTGCTTCTGATTCCGGTTTGGT
TTTTTGTGCCCGTCAACCTCTTGGTTCCGTTGTCGCTTCTCAGTCTCCTG
TTTCTCCTTTTGCTGATTGGCTGTCACCGCTTT
BO12590.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32269-PA | 999 | CG32269-RA | 155..996 | 860..19 | 4210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32270-RA | 2037 | CG32270-RA | 1098..1960 | 882..19 | 4295 | 99.9 | Minus |
CG32269-RB | 1195 | CG32269-RB | 256..1118 | 882..19 | 4295 | 99.9 | Minus |
CG32269-RA | 2037 | CG32269-RA | 1098..1960 | 882..19 | 4295 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3207026..3207888 | 19..882 | 4270 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:00:40 has no hits.
BO12590.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:09 Download gff for
BO12590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32269-PA | 133..999 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:29 Download gff for
BO12590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32269-PA | 133..999 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:11 Download gff for
BO12590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32270-RA | 1097..1968 | 11..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:24 Download gff for
BO12590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32269-RA | 1097..1968 | 11..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:24 Download gff for
BO12590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3207018..3207888 | 11..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:11 Download gff for
BO12590.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3207018..3207888 | 11..883 | 99 | | Plus |
BO12590.5prime Sequence
911 bp (787 high quality bases) assembled on 2006-05-08
> BO12590.5prime
GAAGTTATCAGTCGACATGTTTTGCCGAATATCCGGCAATAAAAGCCGGG
GCAAGGTCATAGCCAAAACAGTTCACAGCGATATGCTTTGGCGCTGCGAG
TATCTTATTTTGGGAATGCTGCTCTTGGCCGAGCTTACCCAGTTGGGTGA
AGCGGTGACAGCCAATCAGCAAAGGAGAAACAGGAGACTGAGAAGCGACA
ACGGAACCAAGAGGTTGACGGGCACAAAAAACCAAACCGGAATCAGAAGC
AATCGACGCCAAGGTACAGCGAGGAAACTCTCCGCCAAGAGGGTCAACCA
GAACAAAAAGGCCGCCACATCGTCCAAGATTCAGTCCAGGATTGTGGGTG
GCACCAGTACCACTATTTCCACCACACCGTACATTGTTCAGTTGCGTCGA
GGATCGAATCTGTGTAGCGGTTCCCTCATAACCGAGCAATGGGTTCTAAC
TGCTGCCCATTGCGTCAAGGGATACAGTGCCTCCGATTTCACGGTGCGCG
GAGGAACCACTACTTTGGATGGGAGTGATGGCGTCACTCGCTCCGTCAGT
TCCATTCATGTGGCTCCGAAGTTCACCTCGAAGAAAATGAACATGGATGC
AGCTTTGCTGAAGCTGAACCAATCCCTGACGGGCACCAATATCGGAACCA
TATCAATGGGCAACTATCGACCCAAGGCCGGTTCAAGGGTACGCATTGCA
GGATGGGGTGTGACCAAGGAAGGTTCTACAACGGCATCCAAAACTCTGCA
GACCGCCCAGATAAGGGTGGTCAGGCAGCAAAAGTGTCGGAAGGACTACC
GCGGTCAGGCTACCATCACCAAGTACATGCTTTGTGCCCGCGCTGCTGGC
AAGGATTTCTGCAGCGGAGACTCCGGTGGCCCAGTGACCAGGACAACACA
CTCTTGGGCAT
BO12590.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32269-PA | 999 | CG32269-RA | 1..877 | 17..893 | 4335 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32270-RA | 2037 | CG32270-RA | 965..1860 | 17..911 | 4425 | 99.7 | Plus |
CG32269-RB | 1195 | CG32269-RB | 123..1018 | 17..911 | 4425 | 99.7 | Plus |
CG32269-RA | 2037 | CG32269-RA | 965..1860 | 17..911 | 4425 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3207126..3208021 | 911..17 | 4400 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:51:20 has no hits.
BO12590.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:10 Download gff for
BO12590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32269-PA | 1..896 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:31 Download gff for
BO12590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32269-PA | 1..896 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:43 Download gff for
BO12590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32270-RA | 958..1860 | 6..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:26:18 Download gff for
BO12590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32269-RA | 958..1860 | 6..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:26:18 Download gff for
BO12590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3207126..3208028 | 6..911 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:43 Download gff for
BO12590.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3207126..3208028 | 6..911 | 99 | | Minus |
BO12590.complete Sequence
1030 bp assembled on 2006-10-11
GenBank Submission: FJ632499
> BO12590.complete
GAAGTTATCAGTCGACATGTTTTGCCGAATATCCGGCAATAAAAGCCGGG
GCAAGGTCATAGCCAAAACAGTTCACAGCGATATGCTTTGGCGCTGCGAG
TATCTTATTTTGGGAATGCTGCTCTTGGCCGAGCTTACCCAGTTGGGTGA
AGCGGTGACAGCCAATCAGCAAAGGAGAAACAGGAGACTGAGAAGCGACA
ACGGAACCAAGAGGTTGACGGGCACAAAAAACCAAACCGGAATCAGAAGC
AATCGACGCCAAGGTACAGCGAGGAAACTCTCCGCCAAGAGGGTCAACCA
GAACAAAAAGGCCGCCACATCGTCCAAGATTCAGTCCAGGATTGTGGGTG
GCACCAGTACCACTATTTCCACCACACCGTACATTGTTCAGTTGCGTCGA
GGATCGAATCTGTGTAGCGGTTCCCTCATAACCGAGCAATGGGTTCTAAC
TGCTGCCCATTGCGTCAAGGGATACAGTGCCTCCGATTTCACGGTGCGCG
GAGGAACCACTACTTTGGATGGGAGTGATGGCGTCACTCGCTCCGTCAGT
TCCATTCATGTGGCTCCGAAGTTCACCTCGAAGAAAATGAACATGGATGC
AGCTTTGCTGAAGCTGAACCAATCCCTGACGGGCACCAATATCGGAACCA
TATCAATGGGCAACTATCGACCCAAGGCCGGTTCAAGGGTACGCATTGCA
GGATGGGGTGTGACCAAGGAAGGTTCTACAACGGCATCCAAAACTCTGCA
GACCGCCCAGATAAGGGTGGTCAGGCAGCAAAAGTGTCGGAAGGACTACC
GCGGTCAGGCTACCATCACCAAGTACATGCTTTGTGCCCGCGCTGCTGGC
AAGGATTCATGCAGCGGAGACTCCGGTGGCCCAGTGACCAGGAACAACAC
ACTCTTGGGCATCGTATCCTTTGGCTACGGGTGCGCCAGAGCCGGCTACC
CAGGTGTATACACAGCCGTGGTTGCGATCCGCCAGTGGGCCACCAACATC
ATGGCCAACAATGCAAGCTTTCTAGACCAT
BO12590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32269-RB | 999 | CG32269-PB | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG32269-RA | 999 | CG32269-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32270-RA | 2037 | CG32270-RA | 965..1960 | 17..1012 | 4980 | 100 | Plus |
CG32269-RB | 1195 | CG32269-RB | 123..1118 | 17..1012 | 4980 | 100 | Plus |
CG32269-RA | 2037 | CG32269-RA | 965..1960 | 17..1012 | 4980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3207026..3208021 | 1012..17 | 4980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:59:01 has no hits.
BO12590.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:11 Download gff for
BO12590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32269-RA | 1..999 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:02 Download gff for
BO12590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32270-RA | 955..1965 | 6..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:26 Download gff for
BO12590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32270-RA | 972..1960 | 24..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:11 Download gff for
BO12590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32270-RA | 955..1965 | 6..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:04 Download gff for
BO12590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32269-RA | 972..1960 | 24..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:04 Download gff for
BO12590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3207023..3208014 | 24..1014 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:26 Download gff for
BO12590.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3207023..3208014 | 24..1014 | 99 | | Minus |
BO12590.pep Sequence
Translation from 16 to 1030
> BO12590.pep
MFCRISGNKSRGKVIAKTVHSDMLWRCEYLILGMLLLAELTQLGEAVTAN
QQRRNRRLRSDNGTKRLTGTKNQTGIRSNRRQGTARKLSAKRVNQNKKAA
TSSKIQSRIVGGTSTTISTTPYIVQLRRGSNLCSGSLITEQWVLTAAHCV
KGYSASDFTVRGGTTTLDGSDGVTRSVSSIHVAPKFTSKKMNMDAALLKL
NQSLTGTNIGTISMGNYRPKAGSRVRIAGWGVTKEGSTTASKTLQTAQIR
VVRQQKCRKDYRGQATITKYMLCARAAGKDSCSGDSGGPVTRNNTLLGIV
SFGYGCARAGYPGVYTAVVAIRQWATNIMANNASFLDH
BO12590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32269-PB | 332 | CG32269-PB | 1..332 | 1..332 | 1697 | 100 | Plus |
CG32269-PA | 332 | CG32269-PA | 1..332 | 1..332 | 1697 | 100 | Plus |
CG3650-PA | 249 | CG3650-PA | 3..242 | 86..324 | 516 | 44.4 | Plus |
CG33159-PA | 257 | CG33159-PA | 19..243 | 102..322 | 466 | 43.6 | Plus |
CG33160-PA | 258 | CG33160-PA | 27..258 | 102..333 | 456 | 39.9 | Plus |