Clone BO12591 Report

Search the DGRC for BO12591

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG17683-RA
Protein status:BO12591.pep:
Sequenced Size:1465

Clone Sequence Records

BO12591.3prime Sequence

846 bp (825 high quality bases) assembled on 2006-05-08

> BO12591.3prime
ATGGTCTAGAAAGCTTGCCCAATTTATATTAAGCGATATACTGAGCTCAG
ATACTACATCATGGTAACGGGTGTGCAGCACGTCATATGATTTATCACTT
TGAAAGCCGTCTAAAAAGTCATTGTAAATATGTTTTGTTAAGGAGTTTTC
GGGTTCGGACCGTGGAAGATTCTGGTATAATTCCTCCAGTTTCCGGGTAA
GCTCGCGAACGTGCTGTCCGGTAGTGGGACGTATTTGTGCTCCTCCGTTT
ATACAGCCCGAGGGACAGGCCATTACCTCAACAAAGTGGTAATTTGATAC
CTTTTCACGCTTCAGTTTTTGTACCAAGTTTTGTATGTTCCGGAAACCGT
TAGCAATTGCAAATTTCAGGACAGTTTTGCCATTCTGTTTAAGTATAATT
TCTCTAAAGTCGCGGTTTTTGAGCTGTTTGAATTCCAACTCTGTTTTTAA
ATCTTCGTTGAAAATATGTTTTGCGGCGTACTTAAATATGTGTTCTGCGT
AACCGCCAGATAGCGTCTTCTCGTGAGCCCATACCATGAATTCTGGGCGT
ACATTAGACCATGGCCAGTCTAAATCAAGGAGATCGTACTGCGACAGCGG
CTGCTGAGCCTCACTAAGCAACTGTTCCACCTCAACTGAAGTGATTACAC
AGTCTACGTCGCGTGAGTTATTTGCCTTGCTGAAAAAGTCCTCTCGAGAG
GCCTCAAGCTTCTTGTCGTAGCAAGGCATCACGGTCACATGGTAGATTCG
TGACGCAGGAACATTCATCTTATCGGCAAGGATTTGCTTCACAAGCACTC
CCATTATTTGCTGAGGAGATCGGGTCGTGGAAACGTAAGGCAATAA

BO12591.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-PE 891 CG17683-RE 61..888 846..19 4140 100 Minus
CG17683-PA 1434 CG17683-RA 604..1431 846..19 4140 100 Minus
CG17683-PD 1293 CG17683-RD 463..1290 846..19 4140 100 Minus
CG17683-PC 1422 CG17683-RC 592..1419 846..19 4140 100 Minus
CG17683-PB 1293 CG17683-RB 463..1290 846..19 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-RC 1785 CG17683-RC 680..1507 846..19 4140 100 Minus
CG17683-RE 1823 CG17683-RE 718..1545 846..19 4140 100 Minus
CG17683-RD 2403 CG17683-RD 745..1572 846..19 4140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4132034..4132653 638..19 3100 100 Minus
2R 25286936 2R 4131769..4131979 846..636 1055 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:21:29 has no hits.

BO12591.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:51 Download gff for BO12591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17683-PB 465..1293 15..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:29 Download gff for BO12591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 745..1575 15..846 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:01 Download gff for BO12591.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17683-RD 745..1575 15..846 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:01 Download gff for BO12591.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 4131769..4131979 636..846 100 -> Minus
2R 4132037..4132656 15..635 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:29 Download gff for BO12591.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19274..19484 636..846 100 -> Minus
arm_2R 19542..20161 15..635 99   Minus

BO12591.5prime Sequence

897 bp (892 high quality bases) assembled on 2006-05-08

> BO12591.5prime
GAAGTTATCAGTCGACATGTCGAGGTTGAGCAGAGCGCTGCAGCTTACAG
ATATAGATGATTTTATTACGCCCTCACAGATATGCATTAAGCCCGTGCAA
ATAGATAAGGCAAGGTCAAAGACTGGGGCAAAGATAAAGATAAAAGGTGA
CGGCTGCTTTGAGGAATCAGAGAGTGGAAATCTAAAACTTAATAAAGTTG
ATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGCT
GAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCCT
TCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGTA
CGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCGC
TATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTCG
CAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGGACGATATTG
CGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGAG
AACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGGA
GAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGATCTC
CTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGATG
AATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCCTTGCTACGA
CAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAACT
CACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCTT
AGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGA

BO12591.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-PA 1434 CG17683-RA 1..881 17..897 4405 100 Plus
CG17683-PC 1422 CG17683-RC 62..869 90..897 4040 100 Plus
CG17683-PD 1293 CG17683-RD 14..740 171..897 3635 100 Plus
CG17683-PB 1293 CG17683-RB 14..740 171..897 3635 100 Plus
CG17683-PE 891 CG17683-RE 1..338 560..897 1690 100 Plus
CG17683-PC 1422 CG17683-RC 1..63 17..79 315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-RA 1696 CG17683-RA 88..969 16..897 4410 100 Plus
CG17683-RC 1785 CG17683-RC 88..957 16..897 4220 98.6 Plus
CG17683-RE 1823 CG17683-RE 200..995 77..897 3720 97 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4131320..4131979 171..830 3300 100 Plus
2R 25286936 2R 4131173..4131268 77..172 480 100 Plus
2R 25286936 2R 4132034..4132103 828..897 350 100 Plus
2R 25286936 2R 4131061..4131124 16..79 320 100 Plus
Blast to na_te.dros performed 2015-02-12 04:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2352..2448 250..155 122 59.8 Minus

BO12591.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:52 Download gff for BO12591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17683-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:48:09 Download gff for BO12591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 88..968 16..896 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:55 Download gff for BO12591.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 88..968 16..896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:55 Download gff for BO12591.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 4131061..4131124 16..79 100 -> Plus
2R 4131176..4131268 80..172 100 -> Plus
2R 4131322..4131979 173..830 100 -> Plus
2R 4132037..4132102 831..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:48:09 Download gff for BO12591.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18681..18773 80..172 100 -> Plus
arm_2R 18566..18629 16..79 100 -> Plus
arm_2R 18827..19484 173..830 100 -> Plus
arm_2R 19542..19607 831..896 100   Plus

BO12591.complete Sequence

1465 bp assembled on 2006-10-11

GenBank Submission: FJ632500

> BO12591.complete
GAAGTTATCAGTCGACATGTCGAGGTTGAGCAGAGCGCTGCAGCTTACAG
ATATAGATGATTTTATTACGCCCTCACAGATATGCATTAAGCCCGTGCAA
ATAGATAAGGCAAGGTCAAAGACTGGGGCAAAGATAAAGATAAAAGGTGA
CGGCTGCTTTGAGGAATCAGAGAGTGGAAATCTAAAACTTAATAAAGTTG
ATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGCT
GAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCCT
TCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGTA
CGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCGC
TATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTCG
CAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGGACGATATTG
CGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGAG
AACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGGA
GAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGATCTC
CTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGATG
AATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCCTTGCTACGA
CAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAACT
CACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCTT
AGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGACTG
GCCATGGTCTAATGTACGCCCAGAATTCATGGTATGGGCTCACGAGAAGA
CGCTATCTGGCGGTTACGCAGAACACATATTTAAGTACGCCGCAAAACAT
ATTTTCAACGAAGATTTAAAAACAGAGTTGGAATTCAAACAGCTCAAAAA
CCGCGACTTTAGAGAAATTATACTTAAACAGAATGGCAAAACTGTCCTGA
AATTTGCAATTGCTAACGGTTTCCGGAACATACAAAACTTGGTACAAAAA
CTGAAGCGTGAAAAGGTATCAAATTACCACTTTGTTGAGGTAATGGCCTG
TCCCTCGGGCTGTATAAACGGAGGAGCACAAATACGTCCCACTACCGGAC
AGCACGTTCGCGAGCTTACCCGGAAACTGGAGGAATTATACCAGAATCTT
CCACGGTCCGAACCCGAAAACTCCTTAACAAAACATATTTACAATGACTT
TTTAGACGGCTTTCAAAGTGATAAATCATATGACGTGCTGCACACCCGTT
ACCATGATGTAGTATCTGAGCTCAGTATATCGCTTAATATAAATTGGGCA
AGCTTTCTAGACCAT

BO12591.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-RA 1434 CG17683-PA 1..1431 17..1447 7155 100 Plus
CG17683-RC 1422 CG17683-PC 1..1419 17..1447 6940 99.2 Plus
CG17683-RD 1293 CG17683-PD 14..1290 171..1447 6385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-RA 1696 CG17683-RA 88..1519 16..1447 7160 100 Plus
CG17683-RC 1785 CG17683-RC 88..1507 16..1447 6945 99.2 Plus
CG17683-RD 2403 CG17683-RD 296..1572 171..1447 6385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 4131320..4131979 171..830 3300 100 Plus
2R 25286936 2R 4132034..4132653 828..1447 3100 100 Plus
2R 25286936 2R 4131173..4131268 77..172 480 100 Plus
2R 25286936 2R 4131061..4131124 16..79 320 100 Plus
Blast to na_te.dros performed 2014-11-27 14:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2352..2448 250..155 122 59.8 Minus

BO12591.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:13 Download gff for BO12591.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 1..1434 17..1451 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:06 Download gff for BO12591.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 125..1559 16..1451 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:43 Download gff for BO12591.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 89..1519 17..1449 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:13 Download gff for BO12591.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 125..1559 16..1451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:43 Download gff for BO12591.complete
Subject Subject Range Query Range Percent Splice Strand
CG17683-RA 89..1519 17..1449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:43 Download gff for BO12591.complete
Subject Subject Range Query Range Percent Splice Strand
2R 4131062..4131124 17..79 100 -> Plus
2R 4131176..4131268 80..172 100 -> Plus
2R 4131322..4131979 173..830 100 -> Plus
2R 4132037..4132653 831..1449 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:43 Download gff for BO12591.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18567..18629 17..79 100 -> Plus
arm_2R 18681..18773 80..172 100 -> Plus
arm_2R 18827..19484 173..830 100 -> Plus
arm_2R 19542..20158 831..1449 99   Plus

BO12591.pep Sequence

Translation from 16 to 1465

> BO12591.pep
MSRLSRALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDGCFEE
SESGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSK
NKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGAD
YVLSTKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKTHGN
FLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEA
SREDFFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNV
RPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFRE
IILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCI
NGGAQIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQ
SDKSYDVLHTRYHDVVSELSISLNINWASFLDH

BO12591.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17683-PA 477 CG17683-PA 1..477 1..477 2484 100 Plus
CG17683-PC 473 CG17683-PC 1..473 1..477 2447 99.2 Plus
CG17683-PD 430 CG17683-PD 5..430 52..477 2223 99.8 Plus
CG17683-PE 296 CG17683-PE 1..296 182..477 1567 100 Plus