Clone Sequence Records
BO12591.3prime Sequence
846 bp (825 high quality bases) assembled on 2006-05-08
> BO12591.3prime
ATGGTCTAGAAAGCTTGCCCAATTTATATTAAGCGATATACTGAGCTCAG
ATACTACATCATGGTAACGGGTGTGCAGCACGTCATATGATTTATCACTT
TGAAAGCCGTCTAAAAAGTCATTGTAAATATGTTTTGTTAAGGAGTTTTC
GGGTTCGGACCGTGGAAGATTCTGGTATAATTCCTCCAGTTTCCGGGTAA
GCTCGCGAACGTGCTGTCCGGTAGTGGGACGTATTTGTGCTCCTCCGTTT
ATACAGCCCGAGGGACAGGCCATTACCTCAACAAAGTGGTAATTTGATAC
CTTTTCACGCTTCAGTTTTTGTACCAAGTTTTGTATGTTCCGGAAACCGT
TAGCAATTGCAAATTTCAGGACAGTTTTGCCATTCTGTTTAAGTATAATT
TCTCTAAAGTCGCGGTTTTTGAGCTGTTTGAATTCCAACTCTGTTTTTAA
ATCTTCGTTGAAAATATGTTTTGCGGCGTACTTAAATATGTGTTCTGCGT
AACCGCCAGATAGCGTCTTCTCGTGAGCCCATACCATGAATTCTGGGCGT
ACATTAGACCATGGCCAGTCTAAATCAAGGAGATCGTACTGCGACAGCGG
CTGCTGAGCCTCACTAAGCAACTGTTCCACCTCAACTGAAGTGATTACAC
AGTCTACGTCGCGTGAGTTATTTGCCTTGCTGAAAAAGTCCTCTCGAGAG
GCCTCAAGCTTCTTGTCGTAGCAAGGCATCACGGTCACATGGTAGATTCG
TGACGCAGGAACATTCATCTTATCGGCAAGGATTTGCTTCACAAGCACTC
CCATTATTTGCTGAGGAGATCGGGTCGTGGAAACGTAAGGCAATAA
BO12591.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17683-PE | 891 | CG17683-RE | 61..888 | 846..19 | 4140 | 100 | Minus |
CG17683-PA | 1434 | CG17683-RA | 604..1431 | 846..19 | 4140 | 100 | Minus |
CG17683-PD | 1293 | CG17683-RD | 463..1290 | 846..19 | 4140 | 100 | Minus |
CG17683-PC | 1422 | CG17683-RC | 592..1419 | 846..19 | 4140 | 100 | Minus |
CG17683-PB | 1293 | CG17683-RB | 463..1290 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17683-RC | 1785 | CG17683-RC | 680..1507 | 846..19 | 4140 | 100 | Minus |
CG17683-RE | 1823 | CG17683-RE | 718..1545 | 846..19 | 4140 | 100 | Minus |
CG17683-RD | 2403 | CG17683-RD | 745..1572 | 846..19 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4132034..4132653 | 638..19 | 3100 | 100 | Minus |
2R | 25286936 | 2R | 4131769..4131979 | 846..636 | 1055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:21:29 has no hits.
BO12591.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:51 Download gff for
BO12591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-PB | 465..1293 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:29 Download gff for
BO12591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RD | 745..1575 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:01 Download gff for
BO12591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RD | 745..1575 | 15..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:01 Download gff for
BO12591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4131769..4131979 | 636..846 | 100 | -> | Minus |
2R | 4132037..4132656 | 15..635 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:29 Download gff for
BO12591.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19274..19484 | 636..846 | 100 | -> | Minus |
arm_2R | 19542..20161 | 15..635 | 99 | | Minus |
BO12591.5prime Sequence
897 bp (892 high quality bases) assembled on 2006-05-08
> BO12591.5prime
GAAGTTATCAGTCGACATGTCGAGGTTGAGCAGAGCGCTGCAGCTTACAG
ATATAGATGATTTTATTACGCCCTCACAGATATGCATTAAGCCCGTGCAA
ATAGATAAGGCAAGGTCAAAGACTGGGGCAAAGATAAAGATAAAAGGTGA
CGGCTGCTTTGAGGAATCAGAGAGTGGAAATCTAAAACTTAATAAAGTTG
ATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGCT
GAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCCT
TCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGTA
CGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCGC
TATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTCG
CAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGGACGATATTG
CGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGAG
AACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGGA
GAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGATCTC
CTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGATG
AATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCCTTGCTACGA
CAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAACT
CACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCTT
AGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGA
BO12591.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17683-PA | 1434 | CG17683-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
CG17683-PC | 1422 | CG17683-RC | 62..869 | 90..897 | 4040 | 100 | Plus |
CG17683-PD | 1293 | CG17683-RD | 14..740 | 171..897 | 3635 | 100 | Plus |
CG17683-PB | 1293 | CG17683-RB | 14..740 | 171..897 | 3635 | 100 | Plus |
CG17683-PE | 891 | CG17683-RE | 1..338 | 560..897 | 1690 | 100 | Plus |
CG17683-PC | 1422 | CG17683-RC | 1..63 | 17..79 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17683-RA | 1696 | CG17683-RA | 88..969 | 16..897 | 4410 | 100 | Plus |
CG17683-RC | 1785 | CG17683-RC | 88..957 | 16..897 | 4220 | 98.6 | Plus |
CG17683-RE | 1823 | CG17683-RE | 200..995 | 77..897 | 3720 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4131320..4131979 | 171..830 | 3300 | 100 | Plus |
2R | 25286936 | 2R | 4131173..4131268 | 77..172 | 480 | 100 | Plus |
2R | 25286936 | 2R | 4132034..4132103 | 828..897 | 350 | 100 | Plus |
2R | 25286936 | 2R | 4131061..4131124 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 04:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2352..2448 | 250..155 | 122 | 59.8 | Minus |
BO12591.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:40:52 Download gff for
BO12591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:48:09 Download gff for
BO12591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RA | 88..968 | 16..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:55 Download gff for
BO12591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RA | 88..968 | 16..896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:55 Download gff for
BO12591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4131061..4131124 | 16..79 | 100 | -> | Plus |
2R | 4131176..4131268 | 80..172 | 100 | -> | Plus |
2R | 4131322..4131979 | 173..830 | 100 | -> | Plus |
2R | 4132037..4132102 | 831..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:48:09 Download gff for
BO12591.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18681..18773 | 80..172 | 100 | -> | Plus |
arm_2R | 18566..18629 | 16..79 | 100 | -> | Plus |
arm_2R | 18827..19484 | 173..830 | 100 | -> | Plus |
arm_2R | 19542..19607 | 831..896 | 100 | | Plus |
BO12591.complete Sequence
1465 bp assembled on 2006-10-11
GenBank Submission: FJ632500
> BO12591.complete
GAAGTTATCAGTCGACATGTCGAGGTTGAGCAGAGCGCTGCAGCTTACAG
ATATAGATGATTTTATTACGCCCTCACAGATATGCATTAAGCCCGTGCAA
ATAGATAAGGCAAGGTCAAAGACTGGGGCAAAGATAAAGATAAAAGGTGA
CGGCTGCTTTGAGGAATCAGAGAGTGGAAATCTAAAACTTAATAAAGTTG
ATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATCACTTCAGCT
GAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCTTAAGGTCCT
TCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATAACGTGCGTA
CGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTAGCCTATCGC
TATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGGGTATTTTCG
CAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGGACGATATTG
CGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGCGAAAATGAG
AACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTGTTACGCGGA
GAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGACCCGATCTC
CTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCCGATAAGATG
AATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCCTTGCTACGA
CAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGGCAAATAACT
CACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAACAGTTGCTT
AGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGATTTAGACTG
GCCATGGTCTAATGTACGCCCAGAATTCATGGTATGGGCTCACGAGAAGA
CGCTATCTGGCGGTTACGCAGAACACATATTTAAGTACGCCGCAAAACAT
ATTTTCAACGAAGATTTAAAAACAGAGTTGGAATTCAAACAGCTCAAAAA
CCGCGACTTTAGAGAAATTATACTTAAACAGAATGGCAAAACTGTCCTGA
AATTTGCAATTGCTAACGGTTTCCGGAACATACAAAACTTGGTACAAAAA
CTGAAGCGTGAAAAGGTATCAAATTACCACTTTGTTGAGGTAATGGCCTG
TCCCTCGGGCTGTATAAACGGAGGAGCACAAATACGTCCCACTACCGGAC
AGCACGTTCGCGAGCTTACCCGGAAACTGGAGGAATTATACCAGAATCTT
CCACGGTCCGAACCCGAAAACTCCTTAACAAAACATATTTACAATGACTT
TTTAGACGGCTTTCAAAGTGATAAATCATATGACGTGCTGCACACCCGTT
ACCATGATGTAGTATCTGAGCTCAGTATATCGCTTAATATAAATTGGGCA
AGCTTTCTAGACCAT
BO12591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17683-RA | 1434 | CG17683-PA | 1..1431 | 17..1447 | 7155 | 100 | Plus |
CG17683-RC | 1422 | CG17683-PC | 1..1419 | 17..1447 | 6940 | 99.2 | Plus |
CG17683-RD | 1293 | CG17683-PD | 14..1290 | 171..1447 | 6385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17683-RA | 1696 | CG17683-RA | 88..1519 | 16..1447 | 7160 | 100 | Plus |
CG17683-RC | 1785 | CG17683-RC | 88..1507 | 16..1447 | 6945 | 99.2 | Plus |
CG17683-RD | 2403 | CG17683-RD | 296..1572 | 171..1447 | 6385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 4131320..4131979 | 171..830 | 3300 | 100 | Plus |
2R | 25286936 | 2R | 4132034..4132653 | 828..1447 | 3100 | 100 | Plus |
2R | 25286936 | 2R | 4131173..4131268 | 77..172 | 480 | 100 | Plus |
2R | 25286936 | 2R | 4131061..4131124 | 16..79 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2352..2448 | 250..155 | 122 | 59.8 | Minus |
BO12591.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:13 Download gff for
BO12591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RA | 1..1434 | 17..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:06 Download gff for
BO12591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RA | 125..1559 | 16..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:43 Download gff for
BO12591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RA | 89..1519 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:13 Download gff for
BO12591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RA | 125..1559 | 16..1451 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:43 Download gff for
BO12591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17683-RA | 89..1519 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:43 Download gff for
BO12591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 4131062..4131124 | 17..79 | 100 | -> | Plus |
2R | 4131176..4131268 | 80..172 | 100 | -> | Plus |
2R | 4131322..4131979 | 173..830 | 100 | -> | Plus |
2R | 4132037..4132653 | 831..1449 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:43 Download gff for
BO12591.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18567..18629 | 17..79 | 100 | -> | Plus |
arm_2R | 18681..18773 | 80..172 | 100 | -> | Plus |
arm_2R | 18827..19484 | 173..830 | 100 | -> | Plus |
arm_2R | 19542..20158 | 831..1449 | 99 | | Plus |
BO12591.pep Sequence
Translation from 16 to 1465
> BO12591.pep
MSRLSRALQLTDIDDFITPSQICIKPVQIDKARSKTGAKIKIKGDGCFEE
SESGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQENSK
NKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSLGAD
YVLSTKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKTHGN
FLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKKLEA
SREDFFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPWSNV
RPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRDFRE
IILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPSGCI
NGGAQIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLDGFQ
SDKSYDVLHTRYHDVVSELSISLNINWASFLDH
BO12591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17683-PA | 477 | CG17683-PA | 1..477 | 1..477 | 2484 | 100 | Plus |
CG17683-PC | 473 | CG17683-PC | 1..473 | 1..477 | 2447 | 99.2 | Plus |
CG17683-PD | 430 | CG17683-PD | 5..430 | 52..477 | 2223 | 99.8 | Plus |
CG17683-PE | 296 | CG17683-PE | 1..296 | 182..477 | 1567 | 100 | Plus |