Clone BO12593 Report

Search the DGRC for BO12593

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG7785-RA
Protein status:BO12593.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO12593.3prime Sequence

800 bp (796 high quality bases) assembled on 2006-05-08

> BO12593.3prime
ATGGTCTAGAAAGCTTGCAAGAAGTGACTGTTCCAATAGAATGCGTTCGA
ATCCTGGTGGTGGTCCGTGTGAAAAATTATCCAAGATAATGTCCAGAATG
GCGCCATTGCCCACATAAATGACGGGAAATAGTGCTGCTCCTCGTACATT
TCGAAATGGAACCTCCAGATTCTTTCCATTGAAGTAGAAATTCAGCTCCA
CGTGGTCAAAGGCGACGCCCACAATGTCTCCTTCATCGGGAAAATCTCGC
TGTGGCGATGCTATCAACGAATCACCGATATCCACATCGGATGATGCCAC
TCCAGTGGTCATCAGCAGATCTTCCTGCTGCAAATCCTCGATGGCAATGA
GTCCGGCCGCTTTGGCAGCGCTATTGTTCAGGATACCATTGCTCGTCCTC
GCTGGCTGAGTGGTGCAAGCAGACTGCACCACTGGTCGGAACTCCTCGCG
GTCATTGTGGCGTGTGGCATTATCGGAGCACAGGCACCAGGACTCTCGAT
CCCCGCCGCCGCTCTTGCGACTGAGATCCGTTTGACGCGTTGCCAAGCCC
ACCGACCAGCTGCCGCCGTGCTGGATCTTCACCTCGAAGTAGGACTTCGA
TTGGACCAAAGGCGCCGTGGCCAGGACGCCGCCAGTGCCCGTTACGCGCA
GTTGGTGTGACAGCAGGATTACATCAGGTCCCATATGCGCTGCATCCAGG
TGAACATCGGGCTCCCGCAGGCGACTGGTTGCCGTCGGTTTCCTTATGTG
TCCACCATTGAGACAGGTGCGTAGGCAGCAGAACATGTCGACTGATAACT

BO12593.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-PA 771 CG7785-RA 1..768 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-RA 1747 CG7785-RA 115..882 786..19 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18022105..18022672 681..114 2840 100 Minus
3R 32079331 3R 18021714..18021820 786..680 535 100 Minus
3R 32079331 3R 18022729..18022824 114..19 480 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:48:25 has no hits.

BO12593.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:15 Download gff for BO12593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-PA 1..771 18..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:35 Download gff for BO12593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-PA 1..771 18..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:47:54 Download gff for BO12593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 113..882 19..789 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:04 Download gff for BO12593.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 113..882 19..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:04 Download gff for BO12593.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18021712..18021819 681..789 99 -> Minus
3R 18022106..18022672 114..680 100 -> Minus
3R 18022730..18022824 19..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:47:54 Download gff for BO12593.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13847434..13847541 681..789 99 -> Minus
arm_3R 13847828..13848394 114..680 100 -> Minus
arm_3R 13848452..13848546 19..113 100   Minus

BO12593.5prime Sequence

800 bp (797 high quality bases) assembled on 2006-05-08

> BO12593.5prime
GAAGTTATCAGTCGACATGTTCTGCTGCCTACGCACCTGTCTCAATGGTG
GACACATAAGGAAACCGACGGCAACCAGTCGCCTGCGGGAGCCCGATGTT
CACCTGGATGCAGCGCATATGGGACCTGATGTAATCCTGCTGTCACACCA
ACTGCGCGTAACGGGCACTGGCGGCGTCCTGGCCACGGCGCCTTTGGTCC
AATCGAAGTCCTACTTCGAGGTGAAGATCCAGCACGGCGGCAGCTGGTCG
GTGGGCTTGGCAACGCGTCAAACGGATCTCAGTCGCAAGAGCGGCGGCGG
GGATCGAGAGTCCTGGTGCCTGTGCTCCGATAATGCCACACGCCACAATG
ACCGCGAGGAGTTCCGACCAGTGGTGCAGTCTGCTTGCACCACTCAGCCA
GCGAGGACGAGCAATGGTATCCTGAACAATAGCGCTGCCAAAGCGGCCGG
ACTCATTGCCATCGAGGATTTGCAGCAGGAAGATCTGCTGATGACCACTG
GAGTGGCATCATCCGATGTGGATATCGGTGATTCGTTGATAGCATCGCCA
CAGCGAGATTTTCCCGATGAAGGAGACATTGTGGGCGTCGCCTTTGACCA
CGTGGAGCTGAATTTCTACTTCAATGGAAAGAATCTGGAGGTTCCATTTC
GAAATGTACGAGGAGCAGCACTATTTCCCGTCATTTATGTGGGCAATGGC
GCCATTCTGGACATTATCTTGGATAATTTTTCACACGGACCACCACCAGG
ATTCGAACGCATTCTATTGGAACAGTCACTTCTTGCAAGCTTTCTAGACC

BO12593.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-PA 771 CG7785-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-RA 1747 CG7785-RA 115..882 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18022105..18022672 122..689 2840 100 Plus
3R 32079331 3R 18021714..18021820 17..123 535 100 Plus
3R 32079331 3R 18022729..18022824 689..784 480 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:57:25 has no hits.

BO12593.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:16 Download gff for BO12593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-PA 1..771 17..785 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:36 Download gff for BO12593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-PA 1..771 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:01 Download gff for BO12593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 113..882 14..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:14 Download gff for BO12593.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 113..882 14..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:14 Download gff for BO12593.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18021712..18021819 14..122 99 -> Plus
3R 18022106..18022672 123..689 100 -> Plus
3R 18022730..18022824 690..784 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:01 Download gff for BO12593.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13847434..13847541 14..122 99 -> Plus
arm_3R 13847828..13848394 123..689 100 -> Plus
arm_3R 13848452..13848546 690..784 100   Plus

BO12593.complete Sequence

802 bp assembled on 2006-10-11

GenBank Submission: FJ632501

> BO12593.complete
GAAGTTATCAGTCGACATGTTCTGCTGCCTACGCACCTGTCTCAATGGTG
GACACATAAGGAAACCGACGGCAACCAGTCGCCTGCGGGAGCCCGATGTT
CACCTGGATGCAGCGCATATGGGACCTGATGTAATCCTGCTGTCACACCA
ACTGCGCGTAACGGGCACTGGCGGCGTCCTGGCCACGGCGCCTTTGGTCC
AATCGAAGTCCTACTTCGAGGTGAAGATCCAGCACGGCGGCAGCTGGTCG
GTGGGCTTGGCAACGCGTCAAACGGATCTCAGTCGCAAGAGCGGCGGCGG
GGATCGAGAGTCCTGGTGCCTGTGCTCCGATAATGCCACACGCCACAATG
ACCGCGAGGAGTTCCGACCAGTGGTGCAGTCTGCTTGCACCACTCAGCCA
GCGAGGACGAGCAATGGTATCCTGAACAATAGCGCTGCCAAAGCGGCCGG
ACTCATTGCCATCGAGGATTTGCAGCAGGAAGATCTGCTGATGACCACTG
GAGTGGCATCATCCGATGTGGATATCGGTGATTCGTTGATAGCATCGCCA
CAGCGAGATTTTCCCGATGAAGGAGACATTGTGGGCGTCGCCTTTGACCA
CGTGGAGCTGAATTTCTACTTCAATGGAAAGAATCTGGAGGTTCCATTTC
GAAATGTACGAGGAGCAGCACTATTTCCCGTCATTTATGTGGGCAATGGC
GCCATTCTGGACATTATCTTGGATAATTTTTCACACGGACCACCACCAGG
ATTCGAACGCATTCTATTGGAACAGTCACTTCTTGCAAGCTTTCTAGACC
AT

BO12593.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-RA 771 CG7785-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-RA 1747 CG7785-RA 115..882 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18022105..18022672 122..689 2840 100 Plus
3R 32079331 3R 18021714..18021820 17..123 535 100 Plus
3R 32079331 3R 18022729..18022824 689..784 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:58:25 has no hits.

BO12593.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:14 Download gff for BO12593.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 1..771 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:08 Download gff for BO12593.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 108..877 14..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:21 Download gff for BO12593.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 120..882 22..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:14 Download gff for BO12593.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 108..877 14..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:49 Download gff for BO12593.complete
Subject Subject Range Query Range Percent Splice Strand
CG7785-RA 120..882 22..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:49 Download gff for BO12593.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18021719..18021819 22..122 100 -> Plus
3R 18022106..18022672 123..689 100 -> Plus
3R 18022730..18022824 690..786 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:21 Download gff for BO12593.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13847441..13847541 22..122 100 -> Plus
arm_3R 13847828..13848394 123..689 100 -> Plus
arm_3R 13848452..13848546 690..786 97   Plus

BO12593.pep Sequence

Translation from 16 to 802

> BO12593.pep
MFCCLRTCLNGGHIRKPTATSRLREPDVHLDAAHMGPDVILLSHQLRVTG
TGGVLATAPLVQSKSYFEVKIQHGGSWSVGLATRQTDLSRKSGGGDRESW
CLCSDNATRHNDREEFRPVVQSACTTQPARTSNGILNNSAAKAAGLIAIE
DLQQEDLLMTTGVASSDVDIGDSLIASPQRDFPDEGDIVGVAFDHVELNF
YFNGKNLEVPFRNVRGAALFPVIYVGNGAILDIILDNFSHGPPPGFERIL
LEQSLLASFLDH

BO12593.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7785-PA 256 CG7785-PA 1..256 1..256 1339 100 Plus