Clone Sequence Records
BO12593.3prime Sequence
800 bp (796 high quality bases) assembled on 2006-05-08
> BO12593.3prime
ATGGTCTAGAAAGCTTGCAAGAAGTGACTGTTCCAATAGAATGCGTTCGA
ATCCTGGTGGTGGTCCGTGTGAAAAATTATCCAAGATAATGTCCAGAATG
GCGCCATTGCCCACATAAATGACGGGAAATAGTGCTGCTCCTCGTACATT
TCGAAATGGAACCTCCAGATTCTTTCCATTGAAGTAGAAATTCAGCTCCA
CGTGGTCAAAGGCGACGCCCACAATGTCTCCTTCATCGGGAAAATCTCGC
TGTGGCGATGCTATCAACGAATCACCGATATCCACATCGGATGATGCCAC
TCCAGTGGTCATCAGCAGATCTTCCTGCTGCAAATCCTCGATGGCAATGA
GTCCGGCCGCTTTGGCAGCGCTATTGTTCAGGATACCATTGCTCGTCCTC
GCTGGCTGAGTGGTGCAAGCAGACTGCACCACTGGTCGGAACTCCTCGCG
GTCATTGTGGCGTGTGGCATTATCGGAGCACAGGCACCAGGACTCTCGAT
CCCCGCCGCCGCTCTTGCGACTGAGATCCGTTTGACGCGTTGCCAAGCCC
ACCGACCAGCTGCCGCCGTGCTGGATCTTCACCTCGAAGTAGGACTTCGA
TTGGACCAAAGGCGCCGTGGCCAGGACGCCGCCAGTGCCCGTTACGCGCA
GTTGGTGTGACAGCAGGATTACATCAGGTCCCATATGCGCTGCATCCAGG
TGAACATCGGGCTCCCGCAGGCGACTGGTTGCCGTCGGTTTCCTTATGTG
TCCACCATTGAGACAGGTGCGTAGGCAGCAGAACATGTCGACTGATAACT
BO12593.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-PA | 771 | CG7785-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-RA | 1747 | CG7785-RA | 115..882 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18022105..18022672 | 681..114 | 2840 | 100 | Minus |
3R | 32079331 | 3R | 18021714..18021820 | 786..680 | 535 | 100 | Minus |
3R | 32079331 | 3R | 18022729..18022824 | 114..19 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:48:25 has no hits.
BO12593.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:15 Download gff for
BO12593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-PA | 1..771 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:35 Download gff for
BO12593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-PA | 1..771 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:47:54 Download gff for
BO12593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 113..882 | 19..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:32:04 Download gff for
BO12593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 113..882 | 19..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:32:04 Download gff for
BO12593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18021712..18021819 | 681..789 | 99 | -> | Minus |
3R | 18022106..18022672 | 114..680 | 100 | -> | Minus |
3R | 18022730..18022824 | 19..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:47:54 Download gff for
BO12593.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13847434..13847541 | 681..789 | 99 | -> | Minus |
arm_3R | 13847828..13848394 | 114..680 | 100 | -> | Minus |
arm_3R | 13848452..13848546 | 19..113 | 100 | | Minus |
BO12593.5prime Sequence
800 bp (797 high quality bases) assembled on 2006-05-08
> BO12593.5prime
GAAGTTATCAGTCGACATGTTCTGCTGCCTACGCACCTGTCTCAATGGTG
GACACATAAGGAAACCGACGGCAACCAGTCGCCTGCGGGAGCCCGATGTT
CACCTGGATGCAGCGCATATGGGACCTGATGTAATCCTGCTGTCACACCA
ACTGCGCGTAACGGGCACTGGCGGCGTCCTGGCCACGGCGCCTTTGGTCC
AATCGAAGTCCTACTTCGAGGTGAAGATCCAGCACGGCGGCAGCTGGTCG
GTGGGCTTGGCAACGCGTCAAACGGATCTCAGTCGCAAGAGCGGCGGCGG
GGATCGAGAGTCCTGGTGCCTGTGCTCCGATAATGCCACACGCCACAATG
ACCGCGAGGAGTTCCGACCAGTGGTGCAGTCTGCTTGCACCACTCAGCCA
GCGAGGACGAGCAATGGTATCCTGAACAATAGCGCTGCCAAAGCGGCCGG
ACTCATTGCCATCGAGGATTTGCAGCAGGAAGATCTGCTGATGACCACTG
GAGTGGCATCATCCGATGTGGATATCGGTGATTCGTTGATAGCATCGCCA
CAGCGAGATTTTCCCGATGAAGGAGACATTGTGGGCGTCGCCTTTGACCA
CGTGGAGCTGAATTTCTACTTCAATGGAAAGAATCTGGAGGTTCCATTTC
GAAATGTACGAGGAGCAGCACTATTTCCCGTCATTTATGTGGGCAATGGC
GCCATTCTGGACATTATCTTGGATAATTTTTCACACGGACCACCACCAGG
ATTCGAACGCATTCTATTGGAACAGTCACTTCTTGCAAGCTTTCTAGACC
BO12593.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-PA | 771 | CG7785-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-RA | 1747 | CG7785-RA | 115..882 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18022105..18022672 | 122..689 | 2840 | 100 | Plus |
3R | 32079331 | 3R | 18021714..18021820 | 17..123 | 535 | 100 | Plus |
3R | 32079331 | 3R | 18022729..18022824 | 689..784 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:57:25 has no hits.
BO12593.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:16 Download gff for
BO12593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-PA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:36 Download gff for
BO12593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-PA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:01 Download gff for
BO12593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 113..882 | 14..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:14 Download gff for
BO12593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 113..882 | 14..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:14 Download gff for
BO12593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18021712..18021819 | 14..122 | 99 | -> | Plus |
3R | 18022106..18022672 | 123..689 | 100 | -> | Plus |
3R | 18022730..18022824 | 690..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:01 Download gff for
BO12593.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13847434..13847541 | 14..122 | 99 | -> | Plus |
arm_3R | 13847828..13848394 | 123..689 | 100 | -> | Plus |
arm_3R | 13848452..13848546 | 690..784 | 100 | | Plus |
BO12593.complete Sequence
802 bp assembled on 2006-10-11
GenBank Submission: FJ632501
> BO12593.complete
GAAGTTATCAGTCGACATGTTCTGCTGCCTACGCACCTGTCTCAATGGTG
GACACATAAGGAAACCGACGGCAACCAGTCGCCTGCGGGAGCCCGATGTT
CACCTGGATGCAGCGCATATGGGACCTGATGTAATCCTGCTGTCACACCA
ACTGCGCGTAACGGGCACTGGCGGCGTCCTGGCCACGGCGCCTTTGGTCC
AATCGAAGTCCTACTTCGAGGTGAAGATCCAGCACGGCGGCAGCTGGTCG
GTGGGCTTGGCAACGCGTCAAACGGATCTCAGTCGCAAGAGCGGCGGCGG
GGATCGAGAGTCCTGGTGCCTGTGCTCCGATAATGCCACACGCCACAATG
ACCGCGAGGAGTTCCGACCAGTGGTGCAGTCTGCTTGCACCACTCAGCCA
GCGAGGACGAGCAATGGTATCCTGAACAATAGCGCTGCCAAAGCGGCCGG
ACTCATTGCCATCGAGGATTTGCAGCAGGAAGATCTGCTGATGACCACTG
GAGTGGCATCATCCGATGTGGATATCGGTGATTCGTTGATAGCATCGCCA
CAGCGAGATTTTCCCGATGAAGGAGACATTGTGGGCGTCGCCTTTGACCA
CGTGGAGCTGAATTTCTACTTCAATGGAAAGAATCTGGAGGTTCCATTTC
GAAATGTACGAGGAGCAGCACTATTTCCCGTCATTTATGTGGGCAATGGC
GCCATTCTGGACATTATCTTGGATAATTTTTCACACGGACCACCACCAGG
ATTCGAACGCATTCTATTGGAACAGTCACTTCTTGCAAGCTTTCTAGACC
AT
BO12593.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-RA | 771 | CG7785-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-RA | 1747 | CG7785-RA | 115..882 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18022105..18022672 | 122..689 | 2840 | 100 | Plus |
3R | 32079331 | 3R | 18021714..18021820 | 17..123 | 535 | 100 | Plus |
3R | 32079331 | 3R | 18022729..18022824 | 689..784 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:58:25 has no hits.
BO12593.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:14 Download gff for
BO12593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 1..771 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:08 Download gff for
BO12593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 108..877 | 14..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:21 Download gff for
BO12593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 120..882 | 22..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:14 Download gff for
BO12593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 108..877 | 14..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:49 Download gff for
BO12593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7785-RA | 120..882 | 22..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:49 Download gff for
BO12593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18021719..18021819 | 22..122 | 100 | -> | Plus |
3R | 18022106..18022672 | 123..689 | 100 | -> | Plus |
3R | 18022730..18022824 | 690..786 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:21 Download gff for
BO12593.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13847441..13847541 | 22..122 | 100 | -> | Plus |
arm_3R | 13847828..13848394 | 123..689 | 100 | -> | Plus |
arm_3R | 13848452..13848546 | 690..786 | 97 | | Plus |
BO12593.pep Sequence
Translation from 16 to 802
> BO12593.pep
MFCCLRTCLNGGHIRKPTATSRLREPDVHLDAAHMGPDVILLSHQLRVTG
TGGVLATAPLVQSKSYFEVKIQHGGSWSVGLATRQTDLSRKSGGGDRESW
CLCSDNATRHNDREEFRPVVQSACTTQPARTSNGILNNSAAKAAGLIAIE
DLQQEDLLMTTGVASSDVDIGDSLIASPQRDFPDEGDIVGVAFDHVELNF
YFNGKNLEVPFRNVRGAALFPVIYVGNGAILDIILDNFSHGPPPGFERIL
LEQSLLASFLDH
BO12593.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7785-PA | 256 | CG7785-PA | 1..256 | 1..256 | 1339 | 100 | Plus |