Clone Sequence Records
BO12594.3prime Sequence
815 bp (814 high quality bases) assembled on 2006-05-08
> BO12594.3prime
ATGGTCTAGAAAGCTTGCCTGGGTATTGGCCTCGATCCAGGTTAGGTAGT
AGGAGACACGGGTGGCCACATCCGGATACTTGCTGCCGCAGGGTCCGAAG
TTGAAGCTGGTCAAACCGCGAAGCACCTTGTCGTCATCGATGACAGCCGC
ACCGGCATCCCCACGACAGATGCCCTCGCCTTCGGCTCTCGAGAGGCAGA
CGACGGATTCGTAGCCGTATCCGGCTTCCCATTCGCACAGGGATCGGCTC
AGCGTATTGTAGTTGGCCTTCTGCTGTTTATAGGATGCAGTACCATCCGA
AAGTTCACCCCATCCAGCCACATAGACCGGAGTTCCGTTGGGCAGCTCAG
CGTCCACATCTTCCGTCTCCTCATCAGTTGTGGGGGGCAGTGCGATGTCT
TGGATGCGATCGCTAAAGACCAGGGTCTCGTCCAGCTCCAGTATGGCGAT
GTCGTGCAGGAAGTTTCCGTACGATGGATGGATGATCACGCTCTTTACAT
TCACAATGCTGCCGCCGGCGTACTGGTTAATGGTGCCCAGGCGAACAGCC
AAGGTGCTGGCATCCACTGGGGTGATGCCCACGCTGGACACACAGTGGGC
GGCGGTCAGGATGTGGTTTGTTGAGATGATGGCGCCGGAGCAGACGTGGG
CCTTGTTGTATCTCACGGATGCGGACCAGGGGTACTCGCCCTGGGCAACG
TCCTCGCCGCCAAGAATGCGACCTTGTGGCGAGGCTTCCGCGGAGAGGAT
CAGGCCAAAGATTAGCAGGCCGAGGCCGAGAGTAATGCGTGGATCAGCCA
TGTCGACTGATAACT
BO12594.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-PA | 786 | CG9673-RA | 1..783 | 801..19 | 3890 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-RB | 978 | CG9673-RB | 18..805 | 806..19 | 3910 | 99.7 | Minus |
CG9673-RA | 891 | CG9673-RA | 18..805 | 806..19 | 3910 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16702959..16703508 | 19..568 | 2735 | 99.8 | Plus |
X | 23542271 | X | 16703630..16703867 | 569..806 | 1175 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:40:47 has no hits.
BO12594.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:17 Download gff for
BO12594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-PA | 1..786 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:38 Download gff for
BO12594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-PA | 1..786 | 15..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:02:29 Download gff for
BO12594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 16..814 | 10..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:49 Download gff for
BO12594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 16..814 | 10..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:49 Download gff for
BO12594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16702950..16703508 | 10..568 | 99 | <- | Plus |
X | 16703630..16703869 | 569..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:02:29 Download gff for
BO12594.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16596983..16597541 | 10..568 | 99 | <- | Plus |
arm_X | 16597663..16597902 | 569..809 | 99 | | Plus |
BO12594.5prime Sequence
815 bp (785 high quality bases) assembled on 2006-05-08
> BO12594.5prime
GAAGTTATCAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCC
TGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGC
ATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATC
CGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAA
ACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCA
GTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGC
CGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACG
GAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTC
TTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGA
GACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGG
CTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAG
GCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATA
CGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCT
GTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGC
GGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTATCCGGATGT
GGCCACCCGTGTCTCCTACTACCTAACCTGGATCGAGGCCAATACCCAGG
CAAGCTTTCTAGACC
BO12594.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-PA | 786 | CG9673-RA | 1..783 | 17..799 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:39:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-RB | 978 | CG9673-RB | 18..805 | 12..799 | 3910 | 99.7 | Plus |
CG9673-RA | 891 | CG9673-RA | 18..805 | 12..799 | 3910 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16702959..16703508 | 799..250 | 2735 | 99.8 | Minus |
X | 23542271 | X | 16703630..16703867 | 249..12 | 1175 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:39:03 has no hits.
BO12594.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:18 Download gff for
BO12594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-PA | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:39 Download gff for
BO12594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-PA | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:52 Download gff for
BO12594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 16..814 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:06 Download gff for
BO12594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 16..814 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:06 Download gff for
BO12594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16702950..16703508 | 250..808 | 99 | <- | Minus |
X | 16703630..16703869 | 9..249 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:52 Download gff for
BO12594.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16596983..16597541 | 250..808 | 99 | <- | Minus |
arm_X | 16597663..16597902 | 9..249 | 99 | | Minus |
BO12594.complete Sequence
817 bp assembled on 2006-10-11
GenBank Submission: FJ632502
> BO12594.complete
GAAGTTATCAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCC
TGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGC
ATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATC
CGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAA
ACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCA
GTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGC
CGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACG
GAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTC
TTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGA
GACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGG
CTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAG
GCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATA
CGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCT
GTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGC
GGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTATCCGGATGT
GGCCACCCGTGTCTCCTACTACCTAACCTGGATCGAGGCCAATACCCAGG
CAAGCTTTCTAGACCAT
BO12594.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-RB | 786 | CG9673-PB | 1..783 | 17..799 | 3900 | 99.9 | Plus |
CG9673-RA | 786 | CG9673-PA | 1..783 | 17..799 | 3900 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-RB | 978 | CG9673-RB | 18..805 | 12..799 | 3910 | 99.7 | Plus |
CG9673-RA | 891 | CG9673-RA | 18..805 | 12..799 | 3910 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16702959..16703508 | 799..250 | 2735 | 99.8 | Minus |
X | 23542271 | X | 16703630..16703867 | 249..12 | 1175 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:46:02 has no hits.
BO12594.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:15 Download gff for
BO12594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:09 Download gff for
BO12594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 11..809 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:15 Download gff for
BO12594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 23..805 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:15 Download gff for
BO12594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 11..809 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:33 Download gff for
BO12594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9673-RA | 23..805 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:33 Download gff for
BO12594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16702957..16703508 | 250..801 | 99 | <- | Minus |
X | 16703630..16703862 | 17..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:15 Download gff for
BO12594.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16596990..16597541 | 250..801 | 99 | <- | Minus |
arm_X | 16597663..16597895 | 17..249 | 100 | | Minus |
BO12594.pep Sequence
Translation from 16 to 817
> BO12594.pep
MADPRITLGLGLLIFGLILSAEASPQGRILGGEDVAQGEYPWSASVRYNK
AHVCSGAIISTNHILTAAHCVSSVGITPVDASTLAVRLGTINQYAGGSIV
NVKSVIIHPSYGNFLHDIAILELDETLVFSDRIQDIALPPTTDEETEDVD
AELPNGTPVYVAGWGELSDGTASYKQQKANYNTLSRSLCEWEAGYGYESV
VCLSRAEGEGICRGDAGAAVIDDDKVLRGLTSFNFGPCGSKYPDVATRVS
YYLTWIEANTQASFLDH
BO12594.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9673-PB | 261 | CG9673-PB | 1..261 | 1..261 | 1362 | 100 | Plus |
CG9673-PA | 261 | CG9673-PA | 1..261 | 1..261 | 1362 | 100 | Plus |
spheroide-PA | 249 | CG9675-PA | 1..245 | 1..257 | 464 | 42.8 | Plus |
CG1304-PA | 260 | CG1304-PA | 8..257 | 6..260 | 420 | 35.2 | Plus |
Ser6-PA | 259 | CG2071-PA | 5..257 | 5..260 | 411 | 34.1 | Plus |