Clone BO12594 Report

Search the DGRC for BO12594

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG9673-RA
Protein status:BO12594.pep: validated full length
Sequenced Size:817

Clone Sequence Records

BO12594.3prime Sequence

815 bp (814 high quality bases) assembled on 2006-05-08

> BO12594.3prime
ATGGTCTAGAAAGCTTGCCTGGGTATTGGCCTCGATCCAGGTTAGGTAGT
AGGAGACACGGGTGGCCACATCCGGATACTTGCTGCCGCAGGGTCCGAAG
TTGAAGCTGGTCAAACCGCGAAGCACCTTGTCGTCATCGATGACAGCCGC
ACCGGCATCCCCACGACAGATGCCCTCGCCTTCGGCTCTCGAGAGGCAGA
CGACGGATTCGTAGCCGTATCCGGCTTCCCATTCGCACAGGGATCGGCTC
AGCGTATTGTAGTTGGCCTTCTGCTGTTTATAGGATGCAGTACCATCCGA
AAGTTCACCCCATCCAGCCACATAGACCGGAGTTCCGTTGGGCAGCTCAG
CGTCCACATCTTCCGTCTCCTCATCAGTTGTGGGGGGCAGTGCGATGTCT
TGGATGCGATCGCTAAAGACCAGGGTCTCGTCCAGCTCCAGTATGGCGAT
GTCGTGCAGGAAGTTTCCGTACGATGGATGGATGATCACGCTCTTTACAT
TCACAATGCTGCCGCCGGCGTACTGGTTAATGGTGCCCAGGCGAACAGCC
AAGGTGCTGGCATCCACTGGGGTGATGCCCACGCTGGACACACAGTGGGC
GGCGGTCAGGATGTGGTTTGTTGAGATGATGGCGCCGGAGCAGACGTGGG
CCTTGTTGTATCTCACGGATGCGGACCAGGGGTACTCGCCCTGGGCAACG
TCCTCGCCGCCAAGAATGCGACCTTGTGGCGAGGCTTCCGCGGAGAGGAT
CAGGCCAAAGATTAGCAGGCCGAGGCCGAGAGTAATGCGTGGATCAGCCA
TGTCGACTGATAACT

BO12594.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-PA 786 CG9673-RA 1..783 801..19 3890 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RB 978 CG9673-RB 18..805 806..19 3910 99.7 Minus
CG9673-RA 891 CG9673-RA 18..805 806..19 3910 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16702959..16703508 19..568 2735 99.8 Plus
X 23542271 X 16703630..16703867 569..806 1175 99.6 Plus
Blast to na_te.dros performed on 2015-02-10 18:40:47 has no hits.

BO12594.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:17 Download gff for BO12594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-PA 1..786 15..801 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:38 Download gff for BO12594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-PA 1..786 15..801 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:02:29 Download gff for BO12594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 16..814 10..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:49 Download gff for BO12594.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 16..814 10..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:49 Download gff for BO12594.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16702950..16703508 10..568 99 <- Plus
X 16703630..16703869 569..809 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:02:29 Download gff for BO12594.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16596983..16597541 10..568 99 <- Plus
arm_X 16597663..16597902 569..809 99   Plus

BO12594.5prime Sequence

815 bp (785 high quality bases) assembled on 2006-05-08

> BO12594.5prime
GAAGTTATCAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCC
TGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGC
ATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATC
CGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAA
ACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCA
GTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGC
CGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACG
GAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTC
TTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGA
GACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGG
CTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAG
GCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATA
CGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCT
GTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGC
GGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTATCCGGATGT
GGCCACCCGTGTCTCCTACTACCTAACCTGGATCGAGGCCAATACCCAGG
CAAGCTTTCTAGACC

BO12594.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-PA 786 CG9673-RA 1..783 17..799 3890 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RB 978 CG9673-RB 18..805 12..799 3910 99.7 Plus
CG9673-RA 891 CG9673-RA 18..805 12..799 3910 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16702959..16703508 799..250 2735 99.8 Minus
X 23542271 X 16703630..16703867 249..12 1175 99.6 Minus
Blast to na_te.dros performed on 2015-02-13 08:39:03 has no hits.

BO12594.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:18 Download gff for BO12594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-PA 1..786 17..803 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:39 Download gff for BO12594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-PA 1..786 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:40:52 Download gff for BO12594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 16..814 9..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:36:06 Download gff for BO12594.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 16..814 9..808 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:36:06 Download gff for BO12594.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16702950..16703508 250..808 99 <- Minus
X 16703630..16703869 9..249 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:40:52 Download gff for BO12594.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16596983..16597541 250..808 99 <- Minus
arm_X 16597663..16597902 9..249 99   Minus

BO12594.complete Sequence

817 bp assembled on 2006-10-11

GenBank Submission: FJ632502

> BO12594.complete
GAAGTTATCAGTCGACATGGCTGATCCACGCATTACTCTCGGCCTCGGCC
TGCTAATCTTTGGCCTGATCCTCTCCGCGGAAGCCTCGCCACAAGGTCGC
ATTCTTGGCGGCGAGGACGTTGCCCAGGGCGAGTACCCCTGGTCCGCATC
CGTGAGATACAACAAGGCCCACGTCTGCTCCGGCGCCATCATCTCAACAA
ACCACATCCTGACCGCCGCCCACTGTGTGTCCAGCGTGGGCATCACCCCA
GTGGATGCCAGCACCTTGGCTGTTCGCCTGGGCACCATTAACCAGTACGC
CGGCGGCAGCATTGTGAATGTAAAGAGCGTGATCATCCATCCATCGTACG
GAAACTTCCTGCACGACATCGCCATACTGGAGCTGGACGAGACCCTGGTC
TTTAGCGATCGCATCCAAGACATCGCACTGCCCCCCACAACTGATGAGGA
GACGGAAGATGTGGACGCTGAGCTGCCCAACGGAACTCCGGTCTATGTGG
CTGGATGGGGTGAACTTTCGGATGGTACTGCATCCTATAAACAGCAGAAG
GCCAACTACAATACGCTGAGCCGATCCCTGTGCGAATGGGAAGCCGGATA
CGGCTACGAATCCGTCGTCTGCCTCTCGAGAGCCGAAGGCGAGGGCATCT
GTCGTGGGGATGCCGGTGCGGCTGTCATCGATGACGACAAGGTGCTTCGC
GGTTTGACCAGCTTCAACTTCGGACCCTGCGGCAGCAAGTATCCGGATGT
GGCCACCCGTGTCTCCTACTACCTAACCTGGATCGAGGCCAATACCCAGG
CAAGCTTTCTAGACCAT

BO12594.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RB 786 CG9673-PB 1..783 17..799 3900 99.9 Plus
CG9673-RA 786 CG9673-PA 1..783 17..799 3900 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-RB 978 CG9673-RB 18..805 12..799 3910 99.7 Plus
CG9673-RA 891 CG9673-RA 18..805 12..799 3910 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16702959..16703508 799..250 2735 99.8 Minus
X 23542271 X 16703630..16703867 249..12 1175 99.6 Minus
Blast to na_te.dros performed on 2014-11-27 07:46:02 has no hits.

BO12594.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:15 Download gff for BO12594.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 1..786 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:09 Download gff for BO12594.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 11..809 9..808 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:15 Download gff for BO12594.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 23..805 17..801 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:15 Download gff for BO12594.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 11..809 9..808 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:33 Download gff for BO12594.complete
Subject Subject Range Query Range Percent Splice Strand
CG9673-RA 23..805 17..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:33 Download gff for BO12594.complete
Subject Subject Range Query Range Percent Splice Strand
X 16702957..16703508 250..801 99 <- Minus
X 16703630..16703862 17..249 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:15 Download gff for BO12594.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16596990..16597541 250..801 99 <- Minus
arm_X 16597663..16597895 17..249 100   Minus

BO12594.pep Sequence

Translation from 16 to 817

> BO12594.pep
MADPRITLGLGLLIFGLILSAEASPQGRILGGEDVAQGEYPWSASVRYNK
AHVCSGAIISTNHILTAAHCVSSVGITPVDASTLAVRLGTINQYAGGSIV
NVKSVIIHPSYGNFLHDIAILELDETLVFSDRIQDIALPPTTDEETEDVD
AELPNGTPVYVAGWGELSDGTASYKQQKANYNTLSRSLCEWEAGYGYESV
VCLSRAEGEGICRGDAGAAVIDDDKVLRGLTSFNFGPCGSKYPDVATRVS
YYLTWIEANTQASFLDH

BO12594.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9673-PB 261 CG9673-PB 1..261 1..261 1362 100 Plus
CG9673-PA 261 CG9673-PA 1..261 1..261 1362 100 Plus
spheroide-PA 249 CG9675-PA 1..245 1..257 464 42.8 Plus
CG1304-PA 260 CG1304-PA 8..257 6..260 420 35.2 Plus
Ser6-PA 259 CG2071-PA 5..257 5..260 411 34.1 Plus