Clone Sequence Records
BO12596.3prime Sequence
800 bp (799 high quality bases) assembled on 2006-05-08
> BO12596.3prime
ATGGTCTAGAAAGCTTGCCTTGTCCTTGCTGTCGCCCTTGCCACCACGGA
TCCTACCGGTACGACGGGCAGCGATGAGACCGACCTTGCGACCGGCGGAT
GTGCCTCGCTTGACGGTGGAGGCCTTACCAATGTGCTGATGGTTACCACC
ACCGTGAGGATGCTCCACGGGGTTCATGGCCACACCACGCACCTTAGGCC
AGCTGTTGCGCTTCACCTTGTACTTGTGGTAGGCACGACCGGCCTTCAGG
ATGGGCTTGTCGATACGACCGCCGCCGGCGACGATGCCAACCATGGCGCG
GTTGGCCGAGGGCACGACCTTCTTGGCGCCGGATGGCAGCTTGACACGCG
TCTTCTTGGTGTCCTGGTTGTGGGCAATCACGGTGGCGTAGTTGCCAGAG
GTGCGGGCCAAACGGCCGCGATCACCGGTCTTCTCCTCCAGGTTGCAGAT
GATGGTACCCTCGGGCATCTGGCTGAGGGGCATCACGTTGCCGATCTGAA
GGGTGGCCTTGCGGCCGCAGTACACGAACTGGCCGGTGTGCATGCCCTCG
GGGGCGATGAACAGCTCCTTGCGGATCTTGTAGCGGTAGGGGTCGCGGAA
GTGGACGACGGCCAGAGGAGCGCCACGGCCGGGATCGTGGATGATGTCCT
TGACAACTCCGCGGATGTAGCCGGAACGCTCGGCGAAGTCCAGGGAACGC
AGCTTGGCGGCTCCCTTGCGCTTCTTCACGTGCGCCTTGAACACGGAACC
AGCTCCCTTACGCTGTGCACGAATAACGCGACCCATGTCGACTGATAACT
BO12596.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1263-PA | 771 | RpL8-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
CG1263-PB | 771 | RpL8-RB | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-RB | 1173 | CG1263-RB | 236..1003 | 786..19 | 3840 | 100 | Minus |
RpL8-RA | 998 | CG1263-RA | 61..828 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2588082..2588713 | 650..19 | 3160 | 100 | Minus |
3L | 28110227 | 3L | 2587753..2587891 | 786..648 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:42:40 has no hits.
BO12596.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:20 Download gff for
BO12596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-PB | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:44 Download gff for
BO12596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1263-PB | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:17 Download gff for
BO12596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..834 | 12..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:28:48 Download gff for
BO12596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..834 | 12..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:28:48 Download gff for
BO12596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2587745..2587890 | 649..798 | 96 | -> | Minus |
3L | 2588084..2588719 | 12..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:17 Download gff for
BO12596.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2587745..2587890 | 649..798 | 96 | -> | Minus |
arm_3L | 2588084..2588719 | 12..648 | 99 | | Minus |
BO12596.5prime Sequence
800 bp (779 high quality bases) assembled on 2006-05-08
> BO12596.5prime
GAAGTTATCAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAG
CTGGTTCCGTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAG
CTGCGTTCCCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGT
CAAGGACATCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCC
ACTTCCGCGACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCC
CCCGAGGGCATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCAC
CCTTCAGATCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCA
TCATCTGCAACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGC
ACCTCTGGCAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAA
GACGCGTGTCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCA
ACCGCGCCATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCC
ATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAG
CTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACG
GTGGTGGTAACCATCAGCACATTGGTAAGGCCTCCACCGTCAAGCGAGGC
ACATCCGCCGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTAG
GATCCGTGGTGGCAAGGGCGACAGCAAGGACAAGGCAAGCTTTCTAGACC
BO12596.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1263-PA | 771 | RpL8-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG1263-PB | 771 | RpL8-RB | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-RB | 1173 | CG1263-RB | 236..1003 | 17..784 | 3840 | 100 | Plus |
RpL8-RA | 998 | CG1263-RA | 61..828 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2588082..2588713 | 153..784 | 3160 | 100 | Plus |
3L | 28110227 | 3L | 2587753..2587891 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:48:18 has no hits.
BO12596.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:22 Download gff for
BO12596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-PB | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:45 Download gff for
BO12596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1263-PB | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:10 Download gff for
BO12596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..834 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:53 Download gff for
BO12596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..834 | 17..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:53 Download gff for
BO12596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2587745..2587890 | 5..154 | 96 | -> | Plus |
3L | 2588084..2588719 | 155..791 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:10 Download gff for
BO12596.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2587745..2587890 | 5..154 | 96 | -> | Plus |
arm_3L | 2588084..2588719 | 155..791 | 99 | | Plus |
BO12596.complete Sequence
802 bp assembled on 2006-10-11
GenBank Submission: FJ632503
> BO12596.complete
GAAGTTATCAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAG
CTGGTTCCGTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAG
CTGCGTTCCCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGT
CAAGGACATCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCC
ACTTCCGCGACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCC
CCCGAGGGCATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCAC
CCTTCAGATCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCA
TCATCTGCAACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGC
ACCTCTGGCAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAA
GACGCGTGTCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCA
ACCGCGCCATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCC
ATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAG
CTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACG
GTGGTGGTAACCATCAGCACATTGGTAAGGCCTCCACCGTCAAGCGAGGC
ACATCCGCCGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTAG
GATCCGTGGTGGCAAGGGCGACAGCAAGGACAAGGCAAGCTTTCTAGACC
AT
BO12596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-RB | 771 | CG1263-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
RpL8-RA | 771 | CG1263-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-RB | 1173 | CG1263-RB | 236..1003 | 17..784 | 3840 | 100 | Plus |
RpL8-RA | 998 | CG1263-RA | 61..828 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:22:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2588082..2588713 | 153..784 | 3160 | 100 | Plus |
3L | 28110227 | 3L | 2587753..2587891 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:22:49 has no hits.
BO12596.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:16 Download gff for
BO12596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RB | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:11 Download gff for
BO12596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RB | 205..986 | 5..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:33 Download gff for
BO12596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..828 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:16 Download gff for
BO12596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RB | 205..986 | 5..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:28 Download gff for
BO12596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL8-RA | 61..828 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:28 Download gff for
BO12596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2587753..2587890 | 17..154 | 100 | -> | Plus |
3L | 2588084..2588713 | 155..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:33 Download gff for
BO12596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2587753..2587890 | 17..154 | 100 | -> | Plus |
arm_3L | 2588084..2588713 | 155..786 | 99 | | Plus |
BO12596.pep Sequence
Translation from 16 to 802
> BO12596.pep
MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIH
DPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGN
VMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKL
PSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVR
GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK
GDSKDKASFLDH
BO12596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL8-PB | 256 | CG1263-PB | 1..256 | 1..256 | 1335 | 100 | Plus |
RpL8-PA | 256 | CG1263-PA | 1..256 | 1..256 | 1335 | 100 | Plus |