Clone BO12596 Report

Search the DGRC for BO12596

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:125
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptRpL8-RA
Protein status:BO12596.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO12596.3prime Sequence

800 bp (799 high quality bases) assembled on 2006-05-08

> BO12596.3prime
ATGGTCTAGAAAGCTTGCCTTGTCCTTGCTGTCGCCCTTGCCACCACGGA
TCCTACCGGTACGACGGGCAGCGATGAGACCGACCTTGCGACCGGCGGAT
GTGCCTCGCTTGACGGTGGAGGCCTTACCAATGTGCTGATGGTTACCACC
ACCGTGAGGATGCTCCACGGGGTTCATGGCCACACCACGCACCTTAGGCC
AGCTGTTGCGCTTCACCTTGTACTTGTGGTAGGCACGACCGGCCTTCAGG
ATGGGCTTGTCGATACGACCGCCGCCGGCGACGATGCCAACCATGGCGCG
GTTGGCCGAGGGCACGACCTTCTTGGCGCCGGATGGCAGCTTGACACGCG
TCTTCTTGGTGTCCTGGTTGTGGGCAATCACGGTGGCGTAGTTGCCAGAG
GTGCGGGCCAAACGGCCGCGATCACCGGTCTTCTCCTCCAGGTTGCAGAT
GATGGTACCCTCGGGCATCTGGCTGAGGGGCATCACGTTGCCGATCTGAA
GGGTGGCCTTGCGGCCGCAGTACACGAACTGGCCGGTGTGCATGCCCTCG
GGGGCGATGAACAGCTCCTTGCGGATCTTGTAGCGGTAGGGGTCGCGGAA
GTGGACGACGGCCAGAGGAGCGCCACGGCCGGGATCGTGGATGATGTCCT
TGACAACTCCGCGGATGTAGCCGGAACGCTCGGCGAAGTCCAGGGAACGC
AGCTTGGCGGCTCCCTTGCGCTTCTTCACGTGCGCCTTGAACACGGAACC
AGCTCCCTTACGCTGTGCACGAATAACGCGACCCATGTCGACTGATAACT

BO12596.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1263-PA 771 RpL8-RA 1..768 786..19 3840 100 Minus
CG1263-PB 771 RpL8-RB 1..768 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-RB 1173 CG1263-RB 236..1003 786..19 3840 100 Minus
RpL8-RA 998 CG1263-RA 61..828 786..19 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2588082..2588713 650..19 3160 100 Minus
3L 28110227 3L 2587753..2587891 786..648 695 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:42:40 has no hits.

BO12596.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:20 Download gff for BO12596.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-PB 1..771 15..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:44 Download gff for BO12596.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1263-PB 1..771 15..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:18:17 Download gff for BO12596.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..834 12..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:28:48 Download gff for BO12596.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..834 12..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:28:48 Download gff for BO12596.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2587745..2587890 649..798 96 -> Minus
3L 2588084..2588719 12..648 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:18:17 Download gff for BO12596.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2587745..2587890 649..798 96 -> Minus
arm_3L 2588084..2588719 12..648 99   Minus

BO12596.5prime Sequence

800 bp (779 high quality bases) assembled on 2006-05-08

> BO12596.5prime
GAAGTTATCAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAG
CTGGTTCCGTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAG
CTGCGTTCCCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGT
CAAGGACATCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCC
ACTTCCGCGACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCC
CCCGAGGGCATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCAC
CCTTCAGATCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCA
TCATCTGCAACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGC
ACCTCTGGCAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAA
GACGCGTGTCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCA
ACCGCGCCATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCC
ATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAG
CTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACG
GTGGTGGTAACCATCAGCACATTGGTAAGGCCTCCACCGTCAAGCGAGGC
ACATCCGCCGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTAG
GATCCGTGGTGGCAAGGGCGACAGCAAGGACAAGGCAAGCTTTCTAGACC

BO12596.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1263-PA 771 RpL8-RA 1..768 17..784 3840 100 Plus
CG1263-PB 771 RpL8-RB 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-RB 1173 CG1263-RB 236..1003 17..784 3840 100 Plus
RpL8-RA 998 CG1263-RA 61..828 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2588082..2588713 153..784 3160 100 Plus
3L 28110227 3L 2587753..2587891 17..155 695 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:48:18 has no hits.

BO12596.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:22 Download gff for BO12596.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-PB 1..771 17..788 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:45 Download gff for BO12596.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1263-PB 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:02:10 Download gff for BO12596.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..834 17..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:53 Download gff for BO12596.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..834 17..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:53 Download gff for BO12596.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2587745..2587890 5..154 96 -> Plus
3L 2588084..2588719 155..791 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:02:10 Download gff for BO12596.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2587745..2587890 5..154 96 -> Plus
arm_3L 2588084..2588719 155..791 99   Plus

BO12596.complete Sequence

802 bp assembled on 2006-10-11

GenBank Submission: FJ632503

> BO12596.complete
GAAGTTATCAGTCGACATGGGTCGCGTTATTCGTGCACAGCGTAAGGGAG
CTGGTTCCGTGTTCAAGGCGCACGTGAAGAAGCGCAAGGGAGCCGCCAAG
CTGCGTTCCCTGGACTTCGCCGAGCGTTCCGGCTACATCCGCGGAGTTGT
CAAGGACATCATCCACGATCCCGGCCGTGGCGCTCCTCTGGCCGTCGTCC
ACTTCCGCGACCCCTACCGCTACAAGATCCGCAAGGAGCTGTTCATCGCC
CCCGAGGGCATGCACACCGGCCAGTTCGTGTACTGCGGCCGCAAGGCCAC
CCTTCAGATCGGCAACGTGATGCCCCTCAGCCAGATGCCCGAGGGTACCA
TCATCTGCAACCTGGAGGAGAAGACCGGTGATCGCGGCCGTTTGGCCCGC
ACCTCTGGCAACTACGCCACCGTGATTGCCCACAACCAGGACACCAAGAA
GACGCGTGTCAAGCTGCCATCCGGCGCCAAGAAGGTCGTGCCCTCGGCCA
ACCGCGCCATGGTTGGCATCGTCGCCGGCGGCGGTCGTATCGACAAGCCC
ATCCTGAAGGCCGGTCGTGCCTACCACAAGTACAAGGTGAAGCGCAACAG
CTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTGGAGCATCCTCACG
GTGGTGGTAACCATCAGCACATTGGTAAGGCCTCCACCGTCAAGCGAGGC
ACATCCGCCGGTCGCAAGGTCGGTCTCATCGCTGCCCGTCGTACCGGTAG
GATCCGTGGTGGCAAGGGCGACAGCAAGGACAAGGCAAGCTTTCTAGACC
AT

BO12596.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-RB 771 CG1263-PB 1..768 17..784 3840 100 Plus
RpL8-RA 771 CG1263-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-RB 1173 CG1263-RB 236..1003 17..784 3840 100 Plus
RpL8-RA 998 CG1263-RA 61..828 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2588082..2588713 153..784 3160 100 Plus
3L 28110227 3L 2587753..2587891 17..155 695 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:22:49 has no hits.

BO12596.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:16 Download gff for BO12596.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RB 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:11 Download gff for BO12596.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RB 205..986 5..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:33 Download gff for BO12596.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..828 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:16 Download gff for BO12596.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RB 205..986 5..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:28 Download gff for BO12596.complete
Subject Subject Range Query Range Percent Splice Strand
RpL8-RA 61..828 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:28 Download gff for BO12596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2587753..2587890 17..154 100 -> Plus
3L 2588084..2588713 155..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:33 Download gff for BO12596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2587753..2587890 17..154 100 -> Plus
arm_3L 2588084..2588713 155..786 99   Plus

BO12596.pep Sequence

Translation from 16 to 802

> BO12596.pep
MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIH
DPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGN
VMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKL
PSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVR
GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK
GDSKDKASFLDH

BO12596.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
RpL8-PB 256 CG1263-PB 1..256 1..256 1335 100 Plus
RpL8-PA 256 CG1263-PA 1..256 1..256 1335 100 Plus