Clone Sequence Records
BO12605.3prime Sequence
701 bp (700 high quality bases) assembled on 2006-05-08
> BO12605.3prime
ATGGTCTAGAAAGCTTGCGGCCGCCTTGGCAGGAACGGTGGCCTTGGAGG
TCACTTTCGACGACTCTGGTTCCGCATCCAGCTTCTGGACGCGATGAAGA
TCGATGCACTGTCGGAATTGGGCCACCTCCTCAATGCACTTCAAGGTCTC
CCCGGGATGCGCGCGGTAGCAGGCAAGCAGCTGGGATTTCAGGTCCTGGC
AGGGAGGCACTTTGTGCGACGACGCGGTGCTGACGAATCGCTTGTGCACA
TTTTCTACAGCATTGGCGTACTCCTTCTCCAGGATGGTGTTGGTCTTCTT
GAGGTTCTCCTCCAGCTTCGCCATGCGCTCCTTCCACAGCTCGTCATTCT
TGATTAGCTCCTGGTTCATCTGGCGCTGCACATCGGCCGCGCTAATGGTG
TGTCCTCCTCCCTGGACGTAAATGGGCACTGCAGCGGGATAGGAGGATAC
TTTCGGAGCAGGAGAAGCAGCTGGCGAGGATGCGGCTGGCTTGGCGGCAG
CCTTCGTCGTTGGCTTGGGCACTGGTTTCGATTCCTCCGCAGCGGCTGCG
TGCTCACGAGCCTGCTGGGATATTCCCGCCTTCAGTCGCTTGACCACATC
GTCGGATATATCAATAACGCCGGCAGGAGTTGGGTTTTCCATCGAAACGG
TTCGGGGCTCGCGGGATTGAGACTGTCGGGCTCCCATGTCGACTGATAAC
T
BO12605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1715-PA | 672 | l(3)03670-RA | 1..669 | 687..19 | 3320 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)03670-RA | 940 | CG1715-RA | 122..790 | 687..19 | 3330 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31052766..31053308 | 19..561 | 2715 | 100 | Plus |
| 3R | 32079331 | 3R | 31053587..31053713 | 561..687 | 620 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:47:30 has no hits.
BO12605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:27 Download gff for
BO12605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1715-PA | 1..672 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:53 Download gff for
BO12605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1715-PA | 1..672 | 18..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:28:45 Download gff for
BO12605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 122..790 | 19..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:19:36 Download gff for
BO12605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 122..790 | 19..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:19:36 Download gff for
BO12605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31052766..31053307 | 19..560 | 100 | <- | Plus |
| 3R | 31053587..31053713 | 561..687 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:28:45 Download gff for
BO12605.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26878488..26879029 | 19..560 | 100 | <- | Plus |
| arm_3R | 26879309..26879435 | 561..687 | 99 | | Plus |
BO12605.5prime Sequence
701 bp (700 high quality bases) assembled on 2006-05-08
> BO12605.5prime
GAAGTTATCAGTCGACATGGGAGCCCGACAGTCTCAATCCCGCGAGCCCC
GAACCGTTTCGATGGAAAACCCAACTCCTGCCGGCGTTATTGATATATCC
GACGATGTGGTCAAGCGACTGAAGGCGGGAATATCCCAGCAGGCTCGTGA
GCACGCAGCCGCTGCGGAGGAATCGAAACCAGTGCCCAAGCCAACGACGA
AGGCTGCCGCCAAGCCAGCCGCATCCTCGCCAGCTGCTTCTCCTGCTCCG
AAAGTATCCTCCTATCCCGCTGCAGTGCCCATTTACGTCCAGGGAGGAGG
ACACACCATTAGCGCGGCCGATGTGCAGCGCCAGATGAACCAGGAGCTAA
TCAAGAATGACGAGCTGTGGAAGGAGCGCATGGCGAAGCTGGAGGAGAAC
CTCAAGAAGACCAACACCATCCTGGAGAAGGAGTACGCCAATGCTGTAGA
AAATGTGCACAAGCGATTCGTCAGCACCGCGTCGTCGCACAAAGTGCCTC
CCTGCCAGGACCTGAAATCCCAGCTGCTTGCCTGCTACCGCGCGCATCCC
GGGGAGACCTTGAAGTGCATTGAGGAGGTGGCCCAATTCCGACAGTGCAT
CGATCTTCATCGCGTCCAGAAGCTGGATGCGGAACCAGAGTCGTCGAAAG
TGACCTCCAAGGCCACCGTTCCTGCCAAGGCGGCCGCAAGCTTTCTAGAC
C
BO12605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1715-PA | 672 | l(3)03670-RA | 1..669 | 17..685 | 3320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)03670-RA | 940 | CG1715-RA | 122..790 | 17..685 | 3330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31052766..31053308 | 685..143 | 2715 | 100 | Minus |
| 3R | 32079331 | 3R | 31053587..31053713 | 143..17 | 620 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:26:45 has no hits.
BO12605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:28 Download gff for
BO12605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1715-PA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:55 Download gff for
BO12605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1715-PA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:42 Download gff for
BO12605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 122..790 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:22:53 Download gff for
BO12605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 122..790 | 17..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:22:53 Download gff for
BO12605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31052766..31053307 | 144..685 | 100 | <- | Minus |
| 3R | 31053587..31053713 | 17..143 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:42 Download gff for
BO12605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26878488..26879029 | 144..685 | 100 | <- | Minus |
| arm_3R | 26879309..26879435 | 17..143 | 99 | | Minus |
BO12605.complete Sequence
703 bp assembled on 2006-10-11
GenBank Submission: FJ632504
> BO12605.complete
GAAGTTATCAGTCGACATGGGAGCCCGACAGTCTCAATCCCGCGAGCCCC
GAACCGTTTCGATGGAAAACCCAACTCCTGCCGGCGTTATTGATATATCC
GACGATGTGGTCAAGCGACTGAAGGCGGGAATATCCCAGCAGGCTCGTGA
GCACGCAGCCGCTGCGGAGGAATCGAAACCAGTGCCCAAGCCAACGACGA
AGGCTGCCGCCAAGCCAGCCGCATCCTCGCCAGCTGCTTCTCCTGCTCCG
AAAGTATCCTCCTATCCCGCTGCAGTGCCCATTTACGTCCAGGGAGGAGG
ACACACCATTAGCGCGGCCGATGTGCAGCGCCAGATGAACCAGGAGCTAA
TCAAGAATGACGAGCTGTGGAAGGAGCGCATGGCGAAGCTGGAGGAGAAC
CTCAAGAAGACCAACACCATCCTGGAGAAGGAGTACGCCAATGCTGTAGA
AAATGTGCACAAGCGATTCGTCAGCACCGCGTCGTCGCACAAAGTGCCTC
CCTGCCAGGACCTGAAATCCCAGCTGCTTGCCTGCTACCGCGCGCATCCC
GGGGAGACCTTGAAGTGCATTGAGGAGGTGGCCCAATTCCGACAGTGCAT
CGATCTTCATCGCGTCCAGAAGCTGGATGCGGAACCAGAGTCGTCGAAAG
TGACCTCCAAGGCCACCGTTCCTGCCAAGGCGGCCGCAAGCTTTCTAGAC
CAT
BO12605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)03670-RA | 672 | CG1715-PA | 1..669 | 17..685 | 3330 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)03670-RA | 940 | CG1715-RA | 122..790 | 17..685 | 3330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31052766..31053308 | 685..143 | 2715 | 100 | Minus |
| 3R | 32079331 | 3R | 31053587..31053713 | 143..17 | 620 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:16:09 has no hits.
BO12605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:17 Download gff for
BO12605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 1..672 | 17..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:00:12 Download gff for
BO12605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 119..787 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:25 Download gff for
BO12605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 122..790 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:17 Download gff for
BO12605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 119..787 | 17..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:46 Download gff for
BO12605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)03670-RA | 122..790 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:46 Download gff for
BO12605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31052764..31053307 | 144..687 | 99 | <- | Minus |
| 3R | 31053587..31053713 | 17..143 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:25 Download gff for
BO12605.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26878486..26879029 | 144..687 | 99 | <- | Minus |
| arm_3R | 26879309..26879435 | 17..143 | 99 | | Minus |
BO12605.pep Sequence
Translation from 16 to 703
> BO12605.pep
MGARQSQSREPRTVSMENPTPAGVIDISDDVVKRLKAGISQQAREHAAAA
EESKPVPKPTTKAAAKPAASSPAASPAPKVSSYPAAVPIYVQGGGHTISA
ADVQRQMNQELIKNDELWKERMAKLEENLKKTNTILEKEYANAVENVHKR
FVSTASSHKVPPCQDLKSQLLACYRAHPGETLKCIEEVAQFRQCIDLHRV
QKLDAEPESSKVTSKATVPAKAAASFLDH
BO12605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)03670-PA | 223 | CG1715-PA | 1..223 | 1..223 | 1132 | 100 | Plus |
