Clone Sequence Records
BO12606.3prime Sequence
753 bp (752 high quality bases) assembled on 2006-05-08
> BO12606.3prime
ATGGTCTAGAAAGCTTGCCAACTTGTCCAAGTACTGGGATAGATCGGGCA
ATCCTTCCTTAAGACCCTTGCGCTTACGAGTATCCTGGACGATGGCATAG
GGCTTGCTTGAGGGCTCGCTCGGATCGCCAGGCAACACCTGCCAATGATC
GAAGACACATTGAGGGAAGGCCTGTCCTCCGGTATTAGAGCGCAGATCGG
CGGTAAAACCGAATGACTCGTTGACGGGCAGGTATGCCTTCACAACGAAC
ATGGGAGTGCCCACAACCTGGTTTTCCTCGAATACATGGCCACGTCGCCT
GTTGAGCACACCGTATATTCCTCCTACAGCAACCTCGGGGCACTGGATCT
CGCACAGGTAAACAGGCTCCATCAGGCGCGGCTTGGCGGTTATAGCGGCA
GCGTACAGACAACGACGAGTGGTTGGAATGATCTGGCCACCACCACGATG
GATGGCATCAGCGTGAAGTGTCACATCGTAGATGTTGAAGCGGACACCGC
GCAAGTTTTCGTCGGCTAAAATACCCTCCTTTGAGGCCCATTGGAATCCA
GCGACAACAGAGTCCTTGATTTCGTTAAGGTACTGCACGGACTTGGTACA
GTCGAGGATGAAATTCGGACCGGTTCCGTCGGGGCCGAAGCACCAGATCT
TACGGGCCTCAGTCACATCGTAGTCGTACTTCTCAGACAAATAACGGGCA
CGAGCCTTGAACTCATCCTTGGCACTCACATCGCCGTTATCAATGTCCTC
GGG
BO12606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2238-PA | 2535 | Ef2b-RA | 1798..2532 | 753..19 | 3675 | 100 | Minus |
| CG2238-PC | 2499 | Ef2b-RC | 1762..2496 | 753..19 | 3675 | 100 | Minus |
| CG2238-PB | 2499 | Ef2b-RB | 1762..2496 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-RD | 3008 | CG2238-RD | 1873..2607 | 753..19 | 3675 | 100 | Minus |
| EF2-RC | 2819 | CG2238-RC | 1921..2655 | 753..19 | 3675 | 100 | Minus |
| EF2-RA | 2771 | CG2238-RA | 1873..2607 | 753..19 | 3675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 12:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21678314..21679048 | 19..753 | 3675 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 12:14:57 has no hits.
BO12606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:29 Download gff for
BO12606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-PB | 1762..2499 | 15..753 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:56 Download gff for
BO12606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2238-PB | 1762..2499 | 15..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:57:49 Download gff for
BO12606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 1873..2613 | 13..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 13:02:59 Download gff for
BO12606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EF2-RA | 1873..2613 | 13..753 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 13:02:59 Download gff for
BO12606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21678308..21679048 | 13..753 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:57:49 Download gff for
BO12606.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21678308..21679048 | 13..753 | 99 | | Plus |
BO12606.5prime Sequence
880 bp (744 high quality bases) assembled on 2006-05-08
> BO12606.5prime
GAAGTTATCAGTCGACATGGTCAACTTCACCGTCGACGAGATCCGTGGCC
TCATGGACAAGAAGCGGAACATCCGCAACATGTCTGTGATTGCCCACGTA
GACCACGGCAAGTCCACTCTGACCGATTCCCTTGTGTCGAAGGCTGGTAT
CATTGCCGGAGCCAAGGCTGGTGAGACTCGTTTCACTGACACCCGCAAGG
ACGAGCAGGAGCGCTGCATTACCATCAAGTCGACTGCCATTTCCATGTAC
TTTGAGGTGGAGGAAAAGGATCTGGTGTTCATTACCCACCCCGATCAGCG
CGAGAAGGAGTGCAAGGGTTTCCTGATCAACTTGATCGACTCGCCCGGTC
ACGTTGACTTCTCCTCGGAGGTGACCGCCGCCCTTCGTGTAACCGACGGT
GCACTCGTTGTTGTAGACTGCGTCTCCGGAGTTTGTGTCCAGACCGAAAC
CGTGCTGCGTCAGGCCATCGCTGAGCGTATTAAGCCCATCCTATTCATGA
ACAAAATGGACCGCGCTCTGCTTGAGCTGCAACTAGATGCCGAGGAGCTG
TACCAGACCTTCCAGCGCATCGTCGAGAACGTAAACGTTATCATTGCCAC
CTATAACGATGACGGAGGACCGATGGGTGAGGTTCGCGTGGATCCCTCTA
AGGGATCAGTGGGCTTCGGTTCTGGGCTTCACGGCTGGGCGTTCACCCTC
AAGCAGTTCTCTGAGATGTACTCCGAGAAATTCAAGATTGATGTTGTNCA
GCTAATGAACCGATTGTGGGGTGAAAACTTCTTTAACGCCAAGACCAAGA
AATGGCAGAAACAAAAAGAGGCTGACAACAACGCTCGTTCTGCATGTACA
TCCTGGACCCCATCTACAAGGTGTTCGATG
BO12606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2238-PA | 2535 | Ef2b-RA | 1..815 | 17..831 | 4006 | 99.6 | Plus |
| CG2238-PC | 2499 | Ef2b-RC | 1..779 | 53..831 | 3826 | 99.6 | Plus |
| CG2238-PB | 2499 | Ef2b-RB | 1..779 | 53..831 | 3826 | 99.6 | Plus |
| CG2238-PA | 2535 | Ef2b-RA | 815..865 | 830..880 | 255 | 100 | Plus |
| CG2238-PC | 2499 | Ef2b-RC | 779..829 | 830..880 | 255 | 100 | Plus |
| CG2238-PB | 2499 | Ef2b-RB | 779..829 | 830..880 | 255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-RD | 3008 | CG2238-RD | 76..940 | 17..880 | 4259 | 99.5 | Plus |
| EF2-RC | 2819 | CG2238-RC | 124..988 | 17..880 | 4259 | 99.5 | Plus |
| EF2-RA | 2771 | CG2238-RA | 76..940 | 17..880 | 4259 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21680757..21681284 | 762..235 | 2614 | 99.6 | Minus |
| 2L | 23513712 | 2L | 21681344..21681559 | 234..19 | 1080 | 100 | Minus |
| 2L | 23513712 | 2L | 21680062..21680181 | 880..762 | 535 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:30:09 has no hits.
BO12606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:30 Download gff for
BO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-PA | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:57 Download gff for
BO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2238-PA | 1..865 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:28 Download gff for
BO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 68..940 | 9..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:55 Download gff for
BO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EF2-RA | 68..940 | 9..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:55 Download gff for
BO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21680062..21680180 | 763..880 | 98 | <- | Minus |
| 2L | 21680757..21681284 | 235..762 | 99 | <- | Minus |
| 2L | 21681344..21681558 | 20..234 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:28 Download gff for
BO12606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21680062..21680180 | 763..880 | 98 | <- | Minus |
| arm_2L | 21680757..21681284 | 235..762 | 99 | <- | Minus |
| arm_2L | 21681344..21681558 | 20..234 | 100 | <- | Minus |
BO12606.complete Sequence
2566 bp assembled on 2008-01-17
GenBank Submission: FJ632505
> BO12606.complete
GAAGTTATCAGTCGACATGGTCAACTTCACCGTCGACGAGATCCGTGGCC
TCATGGACAAGAAGCGGAACATCCGCAACATGTCTGTGATTGCCCACGTA
GACCACGGCAAGTCCACTCTGACCGATTCCCTTGTGTCGAAGGCTGGTAT
CATTGCCGGAGCCAAGGCTGGTGAGACTCGTTTCACTGACACCCGCAAGG
ACGAGCAGGAGCGCTGCATTACCATCAAGTCGACTGCCATTTCCATGTAC
TTTGAGGTGGAGGAAAAGGATCTGGTGTTCATTACCCACCCCGATCAGCG
CGAGAAGGAGTGCAAGGGTTTCCTGATCAACTTGATCGACTCGCCCGGTC
ACGTTGACTTCTCCTCGGAGGTGACCGCCGCCCTTCGTGTAACCGACGGT
GCACTCGTTGTTGTAGACTGCGTCTCCGGAGTTTGTGTCCAGACCGAAAC
CGTGCTGCGTCAGGCCATCGCTGAGCGTATTAAGCCCATCCTATTCATGA
ACAAAATGGACCGCGCTCTGCTTGAGCTGCAACTAGATGCCGAGGAGCTG
TACCAGACCTTCCAGCGCATCGTCGAGAACGTAAACGTTATCATTGCCAC
CTATAACGATGACGGAGGACCGATGGGTGAGGTTCGCGTGGATCCCTCTA
AGGGATCAGTGGGCTTCGGTTCTGGGCTTCACGGCTGGGCGTTCACCCTC
AAGCAGTTCTCTGAGATGTACTCCGAGAAATTCAAGATTGATGTTGTCAA
GCTAATGAACCGATTGTGGGGTGAAAACTTCTTTAACGCCAAGACCAAGA
AATGGCAGAAACAGAAAGAGGCTGACAACAAACGCTCGTTCTGCATGTAC
ATCCTGGACCCCATCTACAAGGTGTTCGATGCCATTATGAATTACAAGAA
GGAGGAGATAGGTACCTTGCTCGAGAAAATCGGTGTGACTCTGAAGCATG
AAGACAAGGACAAAGATGGCAAAGCTCTGCTGAAGACTGTGATGCGCACC
TGGCTGCCAGCCGGCGAGGCTTTACTTCAGATGATTGCTATTCATTTGCC
GTCGCCAGTGGTTGCCCAGAAGTACCGCATGGAGATGCTGTACGAAGGTC
CCCATGACGATGAGGCCGCTATCGCCGTTAAGTCTTGCGATCCTGATGGT
CCTCTAATGATGTACATTTCTAAGATGGTACCGACCTCTGACAAGGGTCG
CTTCTATGCTTTCGGTCGTGTGTTCGCCGGTAAGGTGGCCACCGGGCAAA
AGTGCCGAATCATGGGCCCCAACTACACTCCCGGCAAGAAGGAGGACTTA
TATGAGAAGGCTATTCAGCGCACAATTCTCATGATGGGTCGTTACGTCGA
GGCCATCGAGGATGTGCCCTCTGGCAACATTTGCGGTCTGGTCGGTGTTG
ATCAGTTCTTGGTTAAGACCGGTACGATTACCACCTTCAAGGACGCCCAC
AACATGAAGGTCATGAAGTTCTCCGTGTCCCCTGTGGTGCGCGTGGCTGT
TGAGCCAAAGAACCCCGCGGACTTGCCTAAGCTGGTGGAGGGCTTGAAGC
GTTTGGCTAAGTCCGATCCTATGGTGCAGTGTATCATCGAAGAGTCCGGC
GAGCATATCATTGCTGGTGCCGGTGAGCTGCATTTGGAGATCTGCCTTAA
GGATCTAGAGGAAGACCACGCTTGTATCCCACTGAAGAAGTCTGATCCCG
TCGTCTCCTACCGTGAGACTGTGTCGGAGGAGTCCGACCAGATGTGTCTG
TCCAAGTCGCCCAACAAGCACAACCGTCTGCTGATGAAAGCCCTACCTAT
GCCAGACGGTCTTCCCGAGGACATTGATAACGGCGATGTGAGTGCCAAGG
ATGAGTTCAAGGCTCGTGCCCGTTATTTGTCTGAGAAGTACGACTACGAT
GTGACTGAGGCCCGTAAGATCTGGTGCTTCGGCCCCGACGGAACCGGTCC
GAATTTCATCCTCGACTGTACCAAGTCCGTGCAGTACCTTAACGAAATCA
AGGACTCTGTTGTCGCTGGATTCCAATGGGCCTCAAAGGAGGGTATTTTA
GCCGACGAAAACTTGCGCGGTGTCCGCTTCAACATCTACGATGTGACACT
TCACGCTGATGCCATCCATCGTGGTGGTGGCCAGATCATTCCAACCACTC
GTCGTTGTCTGTACGCTGCCGCTATAACCGCCAAGCCGCGCCTGATGGAG
CCTGTTTACCTGTGCGAGATCCAGTGCCCCGAGGTTGCTGTAGGAGGAAT
ATACGGTGTGCTCAACAGGCGACGTGGCCATGTATTCGAGGAAAACCAGG
TTGTGGGCACTCCCATGTTCGTTGTGAAGGCATACCTGCCCGTCAACGAG
TCATTCGGTTTTACCGCCGATCTGCGCTCTAATACCGGAGGACAGGCCTT
CCCTCAATGTGTCTTCGATCATTGGCAGGTGTTGCCTGGCGATCCGAGCG
AGCCCTCAAGCAAGCCCTATGCCATCGTCCAGGATACTCGTAAGCGCAAG
GGTCTTAAGGAAGGATTGCCCGATCTATCCCAGTACTTGGACAAGTTGGC
AAGCTTTCTAGACCAT
BO12606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-RD | 2535 | CG2238-PD | 1..2532 | 17..2548 | 12660 | 100 | Plus |
| EF2-RC | 2535 | CG2238-PC | 1..2532 | 17..2548 | 12660 | 100 | Plus |
| EF2-RA | 2535 | CG2238-PA | 1..2532 | 17..2548 | 12660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-RD | 3008 | CG2238-RD | 76..2607 | 17..2548 | 12660 | 100 | Plus |
| EF2-RC | 2819 | CG2238-RC | 124..2655 | 17..2548 | 12660 | 100 | Plus |
| EF2-RA | 2771 | CG2238-RA | 76..2607 | 17..2548 | 12660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21678314..21679404 | 2548..1458 | 5455 | 100 | Minus |
| 2L | 23513712 | 2L | 21679482..21680181 | 1461..762 | 3500 | 100 | Minus |
| 2L | 23513712 | 2L | 21680757..21681284 | 762..235 | 2640 | 100 | Minus |
| 2L | 23513712 | 2L | 21681344..21681559 | 234..19 | 1080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:13:48 has no hits.
BO12606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:41 Download gff for
BO12606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 1..2535 | 17..2552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:16 Download gff for
BO12606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 110..2641 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:27 Download gff for
BO12606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 76..2607 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:41 Download gff for
BO12606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef2b-RA | 102..2647 | 9..2554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:35 Download gff for
BO12606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EF2-RA | 76..2607 | 17..2550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:35 Download gff for
BO12606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21678312..21679402 | 1460..2550 | 99 | <- | Minus |
| 2L | 21679484..21680180 | 763..1459 | 100 | <- | Minus |
| 2L | 21680757..21681284 | 235..762 | 100 | <- | Minus |
| 2L | 21681344..21681560 | 17..234 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:27 Download gff for
BO12606.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21678312..21679402 | 1460..2550 | 99 | <- | Minus |
| arm_2L | 21679484..21680180 | 763..1459 | 100 | <- | Minus |
| arm_2L | 21680757..21681284 | 235..762 | 100 | <- | Minus |
| arm_2L | 21681344..21681560 | 17..234 | 99 | | Minus |
BO12606.pep Sequence
Translation from 16 to 2566
> BO12606.pep
MVNFTVDEIRGLMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAK
AGETRFTDTRKDEQERCITIKSTAISMYFEVEEKDLVFITHPDQREKECK
GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQA
IAERIKPILFMNKMDRALLELQLDAEELYQTFQRIVENVNVIIATYNDDG
GPMGEVRVDPSKGSVGFGSGLHGWAFTLKQFSEMYSEKFKIDVVKLMNRL
WGENFFNAKTKKWQKQKEADNKRSFCMYILDPIYKVFDAIMNYKKEEIGT
LLEKIGVTLKHEDKDKDGKALLKTVMRTWLPAGEALLQMIAIHLPSPVVA
QKYRMEMLYEGPHDDEAAIAVKSCDPDGPLMMYISKMVPTSDKGRFYAFG
RVFAGKVATGQKCRIMGPNYTPGKKEDLYEKAIQRTILMMGRYVEAIEDV
PSGNICGLVGVDQFLVKTGTITTFKDAHNMKVMKFSVSPVVRVAVEPKNP
ADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEED
HACIPLKKSDPVVSYRETVSEESDQMCLSKSPNKHNRLLMKALPMPDGLP
EDIDNGDVSAKDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILD
CTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFNIYDVTLHADAI
HRGGGQIIPTTRRCLYAAAITAKPRLMEPVYLCEIQCPEVAVGGIYGVLN
RRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVF
DHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLPDLSQYLDKLASFLDH
BO12606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EF2-PD | 844 | CG2238-PD | 1..844 | 1..844 | 4411 | 100 | Plus |
| EF2-PC | 844 | CG2238-PC | 1..844 | 1..844 | 4411 | 100 | Plus |
| EF2-PA | 844 | CG2238-PA | 1..844 | 1..844 | 4411 | 100 | Plus |
| CG4849-PA | 975 | CG4849-PA | 116..957 | 4..842 | 1528 | 36.8 | Plus |
| CG33158-PB | 1033 | CG33158-PB | 12..410 | 12..389 | 633 | 36.6 | Plus |
