Clone BO12607 Report

Search the DGRC for BO12607

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG7916-RA
Protein status:BO12607.pep: Imported from assembly
Sequenced Size:895

Clone Sequence Records

BO12607.3prime Sequence

631 bp (568 high quality bases) assembled on 2006-05-08

> BO12607.3prime
ATGGTCTAGAAAGCTTGCGTCTAGCTTCCTGGACTCAATGGCCAACCAGG
GAGCGGGAGTGGGATTGCAACTGCCAATAGGTGGCGGACAGCAAGCTAAA
GAGATACCAGATCTTGTGACCCGTGAGATGCGCATTGGCCAGCGGCACAA
AGATCTCCTCGATCTTGGCGCTGATCTGTTCCTGGTTGCCATTGATGAAG
GCCGGGATCTCCTTGTCGAGCATGTCGTTGATGAACTCATTGATCCTTCC
ATTTCCCATTACACCGCCAATGTTCGAGGATACACCGCCCAAGCCGACGG
CGCAACTGAACTTGTAGATCTTGATGGAGCCAAAGATGAAGGGCATCTTG
TACTTGAACTCGCCCTGAATCGACAGATTCTGCAGGCTGAAGGACAATGG
GCCCGAGCTCTCGTAGCGCACCGACAATCCCAGTTCCTTCAGCAGATTCA
CAAAGGTGTTGGTGTCCAAATAGTGGGCACTGGCCTTCAGCTCTGGGAAG
TTGAAGTGGAACTTGACCTTCTTGCTAAAGGTGTATCTGACCTTCATCTT
CTTGATCTCCATGCCTTCCAGGCCATCGAAACGGAAGCGCAGGAACTGCA
GCAGGGTATCGACAACCGACTCGGCCAAGTG

BO12607.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-PA 864 CG7916-RA 250..801 631..80 2735 99.8 Minus
CG7916-PA 864 CG7916-RA 804..861 76..19 290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-RA 923 CG7916-RA 276..887 631..19 3010 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13847175..13847763 608..19 2870 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 18:15:56 has no hits.

BO12607.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:30 Download gff for BO12607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7916-PA 250..864 15..631 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:59 Download gff for BO12607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7916-PA 250..864 15..631 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:05 Download gff for BO12607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 276..891 14..631 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:32 Download gff for BO12607.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 276..891 14..631 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:32 Download gff for BO12607.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13847097..13847119 609..631 100 -> Minus
2L 13847175..13847767 14..608 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:05 Download gff for BO12607.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13847097..13847119 609..631 100 -> Minus
arm_2L 13847175..13847767 14..608 99 -> Minus

BO12607.5prime Sequence

622 bp (495 high quality bases) assembled on 2006-05-08

> BO12607.5prime
GAAGTTAGTCCCCTTACATGAAAGCTATCGTTTGTGTTTTTGTGACCCTT
TTGGCCTGCGTAGCGGCCTACGATGTGGAGCTGCTCACCGAGGAGCAATG
GGACCAGCTGGTGGCGCGTAATCCCGCCAAGCCCGATACTCAGGGTCTGA
TCTTGAACGGATCGGTGAAGAAGGCCATCAATGGACTGCTGAACCAAATG
CCTTGTGGTTGGCCCCAATATGGAATTCCACCACTGGATCCCTACACCAA
TGCTGATCTCCGCATCCACTTGGCCGAGTCGGTTGTCGATACCCTGCTGC
AGTTCCTGCGCTTCCGTTTCGATGGCCTGGAAGGCATGGAGATCAAGAAG
ATGAAGGTCAGCTACACCTTTAGCAAGAAGGTCAAGTTCCACTTCAACTT
CCCAGAGCTGAAGGCCAGTGCCCACTATTTGGACACCAACACCTTTGTGA
ATCTGCTGAAGGAACTGGGATTGTCGGTGCGCTACGAGAGCTCGGGCCCA
TTGTCCTTCAGCCTGCAGAATCTGTCGATTCTGGGCGAGTTCATGTACAA
GAATGCCCTTCATCTTTGGCTCCATCAAGATCTACAAGTTCAGTTGCGCC
GTCCGCTTGGGCGGTGTATCCT

BO12607.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-PA 864 CG7916-RA 1..535 18..552 2625 99.6 Plus
CG7916-PA 864 CG7916-RA 535..604 553..622 325 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-RA 923 CG7916-RA 27..630 18..622 2955 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13847175..13847506 290..622 1570 98.8 Plus
2L 23513712 2L 13846954..13847119 124..289 830 100 Plus
2L 23513712 2L 13846778..13846883 18..123 530 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:28:56 has no hits.

BO12607.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:31 Download gff for BO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7916-PA 1..604 18..622 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:00 Download gff for BO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7916-PA 1..604 18..622 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:52 Download gff for BO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 23..630 15..622 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:52 Download gff for BO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 23..630 15..622 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:52 Download gff for BO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13846774..13846883 15..123 99 -> Plus
2L 13846954..13847119 124..289 100 -> Plus
2L 13847175..13847506 290..622 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:52 Download gff for BO12607.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13846774..13846883 15..123 99 -> Plus
arm_2L 13846954..13847119 124..289 100 -> Plus
arm_2L 13847175..13847506 290..622 98   Plus

BO12607.complete Sequence

895 bp assembled on 2008-11-10

GenBank Submission: KX797303

> BO12607.complete
GAAGTTATCAGTCGACATGAAAGCTATCGTTTGTGTTTTTGTGACCCTTT
TGGCCTGCGTAGCGGCCTACGATGTGGAGCTGCTCACCGAGGAGCAATGG
GACCAGCTGGTGGCGCGTAATCCCGCCAAGCCCGATACTCAGGGTCTGAT
CTTGAACGGATCGGTGAAGAAGGCCATCAATGGACTGCTGAACCAAATGC
CTTGTGGTTGGCCCCAATATGGAATTCCACCACTGGATCCCTACACCAAT
GCTGATCTCCGCATCCACTTGGCCGAGTCGGTTGTCGATACCCTGCTGCA
GTTCCTGCGCTTCCGTTTCGATGGCCTGGAAGGCATGGAGATCAAGAAGA
TGAAGGTCAGCTACACCTTTAGCAAGAAGGTCAAGTTCCACTTCAACTTC
CCAGAGCTGAAGGCCAGTGCCCACTATTTGGACACCAACACCTTTGTGAA
TCTGCTGAAGGAACTGGGATTGTCGGTGCGCTACGAGAGCTCGGGCCCAT
TGTCCTTCAGCCTGCAGAATCTGTCGATTCAGGGCGAGTTCAAGTACAAG
ATGCCCTTCATCTTTGGCTCCATCAAGATCTACAAGTTCAGTTGCGCCGT
CGGCTTGGGCGGTGTATCCTCGAACATTGGCGGTGTAATGGGAAATGGAA
GGATCAATGAGTTCATCAACGACATGCTCGACAAGGAGATCCCGGCCTTC
ATCAATGGCAACCAGGAACAGATCAGCGCCAAGATCGAGGAGATCTTTGT
GCCGCTGGCCAATGCGCATCTCACGGGTCACAAGATCTGGTATCTCTTTA
GCTTGCTGTCCGCCACCACTGGCAGTTGCAATCCCACTCCCGCTCCCTGG
TTGGCCATTGAGTCCAGGAAGCTAGACGCAAGCTTTCTAGACCAT

BO12607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-RA 864 CG7916-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-RA 923 CG7916-RA 27..887 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13847175..13847763 289..877 2945 100 Plus
2L 23513712 2L 13846954..13847119 123..288 830 100 Plus
2L 23513712 2L 13846778..13846883 17..122 530 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:54:30 has no hits.

BO12607.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:32 Download gff for BO12607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 22..886 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:27 Download gff for BO12607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 27..887 17..879 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:13 Download gff for BO12607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 22..882 17..879 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:33 Download gff for BO12607.complete
Subject Subject Range Query Range Percent Splice Strand
CG7916-RA 27..887 17..879 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:33 Download gff for BO12607.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13846778..13846883 17..122 100 -> Plus
2L 13846954..13847119 123..288 100 -> Plus
2L 13847175..13847763 289..879 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:27 Download gff for BO12607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13846778..13846883 17..122 100 -> Plus
arm_2L 13846954..13847119 123..288 100 -> Plus
arm_2L 13847175..13847763 289..879 99   Plus

BO12607.pep Sequence

Translation from 16 to 895

> BO12607.pep
MKAIVCVFVTLLACVAAYDVELLTEEQWDQLVARNPAKPDTQGLILNGSV
KKAINGLLNQMPCGWPQYGIPPLDPYTNADLRIHLAESVVDTLLQFLRFR
FDGLEGMEIKKMKVSYTFSKKVKFHFNFPELKASAHYLDTNTFVNLLKEL
GLSVRYESSGPLSFSLQNLSIQGEFKYKMPFIFGSIKIYKFSCAVGLGGV
SSNIGGVMGNGRINEFINDMLDKEIPAFINGNQEQISAKIEEIFVPLANA
HLTGHKIWYLFSLLSATTGSCNPTPAPWLAIESRKLDASFLDH

BO12607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7916-PA 287 CG7916-PA 1..287 1..287 1499 100 Plus
CG7953-PB 297 CG7953-PB 36..296 19..278 434 36.3 Plus
CG7953-PA 297 CG7953-PA 36..296 19..278 434 36.3 Plus
CG8997-PB 260 CG8997-PB 28..229 46..252 277 31.4 Plus
CG8997-PA 260 CG8997-PA 28..229 46..252 277 31.4 Plus