Clone Sequence Records
BO12607.3prime Sequence
631 bp (568 high quality bases) assembled on 2006-05-08
> BO12607.3prime
ATGGTCTAGAAAGCTTGCGTCTAGCTTCCTGGACTCAATGGCCAACCAGG
GAGCGGGAGTGGGATTGCAACTGCCAATAGGTGGCGGACAGCAAGCTAAA
GAGATACCAGATCTTGTGACCCGTGAGATGCGCATTGGCCAGCGGCACAA
AGATCTCCTCGATCTTGGCGCTGATCTGTTCCTGGTTGCCATTGATGAAG
GCCGGGATCTCCTTGTCGAGCATGTCGTTGATGAACTCATTGATCCTTCC
ATTTCCCATTACACCGCCAATGTTCGAGGATACACCGCCCAAGCCGACGG
CGCAACTGAACTTGTAGATCTTGATGGAGCCAAAGATGAAGGGCATCTTG
TACTTGAACTCGCCCTGAATCGACAGATTCTGCAGGCTGAAGGACAATGG
GCCCGAGCTCTCGTAGCGCACCGACAATCCCAGTTCCTTCAGCAGATTCA
CAAAGGTGTTGGTGTCCAAATAGTGGGCACTGGCCTTCAGCTCTGGGAAG
TTGAAGTGGAACTTGACCTTCTTGCTAAAGGTGTATCTGACCTTCATCTT
CTTGATCTCCATGCCTTCCAGGCCATCGAAACGGAAGCGCAGGAACTGCA
GCAGGGTATCGACAACCGACTCGGCCAAGTG
BO12607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7916-PA | 864 | CG7916-RA | 250..801 | 631..80 | 2735 | 99.8 | Minus |
CG7916-PA | 864 | CG7916-RA | 804..861 | 76..19 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7916-RA | 923 | CG7916-RA | 276..887 | 631..19 | 3010 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13847175..13847763 | 608..19 | 2870 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:15:56 has no hits.
BO12607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:30 Download gff for
BO12607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-PA | 250..864 | 15..631 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:17:59 Download gff for
BO12607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-PA | 250..864 | 15..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:25:05 Download gff for
BO12607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-RA | 276..891 | 14..631 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:24:32 Download gff for
BO12607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-RA | 276..891 | 14..631 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:24:32 Download gff for
BO12607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13847097..13847119 | 609..631 | 100 | -> | Minus |
2L | 13847175..13847767 | 14..608 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:25:05 Download gff for
BO12607.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13847097..13847119 | 609..631 | 100 | -> | Minus |
arm_2L | 13847175..13847767 | 14..608 | 99 | -> | Minus |
BO12607.5prime Sequence
622 bp (495 high quality bases) assembled on 2006-05-08
> BO12607.5prime
GAAGTTAGTCCCCTTACATGAAAGCTATCGTTTGTGTTTTTGTGACCCTT
TTGGCCTGCGTAGCGGCCTACGATGTGGAGCTGCTCACCGAGGAGCAATG
GGACCAGCTGGTGGCGCGTAATCCCGCCAAGCCCGATACTCAGGGTCTGA
TCTTGAACGGATCGGTGAAGAAGGCCATCAATGGACTGCTGAACCAAATG
CCTTGTGGTTGGCCCCAATATGGAATTCCACCACTGGATCCCTACACCAA
TGCTGATCTCCGCATCCACTTGGCCGAGTCGGTTGTCGATACCCTGCTGC
AGTTCCTGCGCTTCCGTTTCGATGGCCTGGAAGGCATGGAGATCAAGAAG
ATGAAGGTCAGCTACACCTTTAGCAAGAAGGTCAAGTTCCACTTCAACTT
CCCAGAGCTGAAGGCCAGTGCCCACTATTTGGACACCAACACCTTTGTGA
ATCTGCTGAAGGAACTGGGATTGTCGGTGCGCTACGAGAGCTCGGGCCCA
TTGTCCTTCAGCCTGCAGAATCTGTCGATTCTGGGCGAGTTCATGTACAA
GAATGCCCTTCATCTTTGGCTCCATCAAGATCTACAAGTTCAGTTGCGCC
GTCCGCTTGGGCGGTGTATCCT
BO12607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7916-PA | 864 | CG7916-RA | 1..535 | 18..552 | 2625 | 99.6 | Plus |
CG7916-PA | 864 | CG7916-RA | 535..604 | 553..622 | 325 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7916-RA | 923 | CG7916-RA | 27..630 | 18..622 | 2955 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13847175..13847506 | 290..622 | 1570 | 98.8 | Plus |
2L | 23513712 | 2L | 13846954..13847119 | 124..289 | 830 | 100 | Plus |
2L | 23513712 | 2L | 13846778..13846883 | 18..123 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:28:56 has no hits.
BO12607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:31 Download gff for
BO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-PA | 1..604 | 18..622 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:00 Download gff for
BO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-PA | 1..604 | 18..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:52 Download gff for
BO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-RA | 23..630 | 15..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:25:52 Download gff for
BO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-RA | 23..630 | 15..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:25:52 Download gff for
BO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13846774..13846883 | 15..123 | 99 | -> | Plus |
2L | 13846954..13847119 | 124..289 | 100 | -> | Plus |
2L | 13847175..13847506 | 290..622 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:52 Download gff for
BO12607.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13846774..13846883 | 15..123 | 99 | -> | Plus |
arm_2L | 13846954..13847119 | 124..289 | 100 | -> | Plus |
arm_2L | 13847175..13847506 | 290..622 | 98 | | Plus |
BO12607.complete Sequence
895 bp assembled on 2008-11-10
GenBank Submission: KX797303
> BO12607.complete
GAAGTTATCAGTCGACATGAAAGCTATCGTTTGTGTTTTTGTGACCCTTT
TGGCCTGCGTAGCGGCCTACGATGTGGAGCTGCTCACCGAGGAGCAATGG
GACCAGCTGGTGGCGCGTAATCCCGCCAAGCCCGATACTCAGGGTCTGAT
CTTGAACGGATCGGTGAAGAAGGCCATCAATGGACTGCTGAACCAAATGC
CTTGTGGTTGGCCCCAATATGGAATTCCACCACTGGATCCCTACACCAAT
GCTGATCTCCGCATCCACTTGGCCGAGTCGGTTGTCGATACCCTGCTGCA
GTTCCTGCGCTTCCGTTTCGATGGCCTGGAAGGCATGGAGATCAAGAAGA
TGAAGGTCAGCTACACCTTTAGCAAGAAGGTCAAGTTCCACTTCAACTTC
CCAGAGCTGAAGGCCAGTGCCCACTATTTGGACACCAACACCTTTGTGAA
TCTGCTGAAGGAACTGGGATTGTCGGTGCGCTACGAGAGCTCGGGCCCAT
TGTCCTTCAGCCTGCAGAATCTGTCGATTCAGGGCGAGTTCAAGTACAAG
ATGCCCTTCATCTTTGGCTCCATCAAGATCTACAAGTTCAGTTGCGCCGT
CGGCTTGGGCGGTGTATCCTCGAACATTGGCGGTGTAATGGGAAATGGAA
GGATCAATGAGTTCATCAACGACATGCTCGACAAGGAGATCCCGGCCTTC
ATCAATGGCAACCAGGAACAGATCAGCGCCAAGATCGAGGAGATCTTTGT
GCCGCTGGCCAATGCGCATCTCACGGGTCACAAGATCTGGTATCTCTTTA
GCTTGCTGTCCGCCACCACTGGCAGTTGCAATCCCACTCCCGCTCCCTGG
TTGGCCATTGAGTCCAGGAAGCTAGACGCAAGCTTTCTAGACCAT
BO12607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7916-RA | 864 | CG7916-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7916-RA | 923 | CG7916-RA | 27..887 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13847175..13847763 | 289..877 | 2945 | 100 | Plus |
2L | 23513712 | 2L | 13846954..13847119 | 123..288 | 830 | 100 | Plus |
2L | 23513712 | 2L | 13846778..13846883 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:54:30 has no hits.
BO12607.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:32 Download gff for
BO12607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-RA | 22..886 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:27 Download gff for
BO12607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-RA | 27..887 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:16:13 Download gff for
BO12607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-RA | 22..882 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:33 Download gff for
BO12607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7916-RA | 27..887 | 17..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:33 Download gff for
BO12607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13846778..13846883 | 17..122 | 100 | -> | Plus |
2L | 13846954..13847119 | 123..288 | 100 | -> | Plus |
2L | 13847175..13847763 | 289..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:27 Download gff for
BO12607.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13846778..13846883 | 17..122 | 100 | -> | Plus |
arm_2L | 13846954..13847119 | 123..288 | 100 | -> | Plus |
arm_2L | 13847175..13847763 | 289..879 | 99 | | Plus |
BO12607.pep Sequence
Translation from 16 to 895
> BO12607.pep
MKAIVCVFVTLLACVAAYDVELLTEEQWDQLVARNPAKPDTQGLILNGSV
KKAINGLLNQMPCGWPQYGIPPLDPYTNADLRIHLAESVVDTLLQFLRFR
FDGLEGMEIKKMKVSYTFSKKVKFHFNFPELKASAHYLDTNTFVNLLKEL
GLSVRYESSGPLSFSLQNLSIQGEFKYKMPFIFGSIKIYKFSCAVGLGGV
SSNIGGVMGNGRINEFINDMLDKEIPAFINGNQEQISAKIEEIFVPLANA
HLTGHKIWYLFSLLSATTGSCNPTPAPWLAIESRKLDASFLDH
BO12607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7916-PA | 287 | CG7916-PA | 1..287 | 1..287 | 1499 | 100 | Plus |
CG7953-PB | 297 | CG7953-PB | 36..296 | 19..278 | 434 | 36.3 | Plus |
CG7953-PA | 297 | CG7953-PA | 36..296 | 19..278 | 434 | 36.3 | Plus |
CG8997-PB | 260 | CG8997-PB | 28..229 | 46..252 | 277 | 31.4 | Plus |
CG8997-PA | 260 | CG8997-PA | 28..229 | 46..252 | 277 | 31.4 | Plus |