Clone Sequence Records
BO12609.3prime Sequence
721 bp (618 high quality bases) assembled on 2006-05-08
> BO12609.3prime
ATGGTCTAGAAAGCTTGCGACAATGGATACCATTCCCTTGTTCAGGTTGT
CCAGGTGCTCCTTGGCCTTGATCCTCAGCGTGGCGATCGAGTTGCTTCGC
ATGTCCGTCGGCGGTGTGCTCGAACCCTTGCCAGTCGGAGTGGGCGGAGG
TGGTGGGCTATCCCGGCCCACATCGAGCAGCTCTATGTTGGCGCTGGCCG
CGCACTTGTCCAGACTACTGCCGGGATTGCTGCTGGTGCTGCCGGCATCC
AGGTCGCTGCTCAGGTCGCGTCCATCGCCATTGGAATCGGCATTGCCAAT
GCTCAGGTTCTGCGGCGACATGCAGACATCCGGACCGCTGCACTCCAGCG
AGGCGGAGGAGGAGGACGACTGCGAGGATGAGACGGCCACGGTGGTGGCT
GTCGAACTGGGCGGCAGACTGCTGTGCAGCGGCGTGCCGAGGGGGGTCAC
TCCGTGGTGGGGCGAGCCCAAGGACGTCGCATGCGGCGACATGCGTGACA
GGTGCGGCGAGAGGTGAGAAAGGGGTACCACATGGTGGCTGCCATGTGGG
TGGGGCACTCCGTGGGGCGGCGGCGGTGGCGGTGGCTGCGGCTGACCATG
TCCCCCGTGACCCACGTGCGGGGGCGGCGGCCCATTGTGGGCATGGTGGT
GGCCCATGGCCGCCAGACTGCTCATGGTCAGATTTTCCGGGCGCCAGGCT
GAGCGGCGGCGTCAAATAGCT
BO12609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10052-PA | 2622 | Rx-RA | 1953..2619 | 685..19 | 3335 | 100 | Minus |
| CG10052-PA | 2622 | Rx-RA | 1918..1955 | 721..684 | 165 | 97.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-RB | 3267 | CG10052-RB | 2306..3007 | 721..19 | 3475 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20936069..20936770 | 721..19 | 3450 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:46:59 has no hits.
BO12609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:40:34 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:05 Download gff for
BO12609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10052-PA | 1918..2622 | 18..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:39 Download gff for
BO12609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 2306..3011 | 13..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:48 Download gff for
BO12609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 2306..3011 | 13..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:48 Download gff for
BO12609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20936069..20936774 | 13..721 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:39 Download gff for
BO12609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16823574..16824279 | 13..721 | 99 | | Minus |
BO12609.5prime Sequence
886 bp (769 high quality bases) assembled on 2006-05-08
> BO12609.5prime
GAAGTTATCAGTCGACATGTCCGGTTCAGGTGGTGTGGCCAACTCGTCCT
CCACAGCGGCGGCCAACAATACCGCCGCCACATTCCAGCACATCTTCGAG
CAGCTGGTACAGCAGGGCGGCGGAAACCACAAGCTGCCCCCCAAGCAGCT
GGAGCAACTGCGTCACCTGCTCGGCAACGTGAGGGACGCCAAGAATCTGC
AGATGATCGTGGAGAAGTTCAAGAATCTGGAGCAGTTCCACGAGCACTAC
GCCGCCCACCTGGCTAACAACAACACTGTGATCTCAACGGAAGATAGCAA
CGACTTGGTTAAGGATAATGCCAGGAAGTATGGATCTGGTGGACAAACGC
TAACGCCCCGCCACACAATCGATGCCATTCTGGGCCTAAAGAATCGCAAT
GGCGCGGCGAATGGCAGTGGCAGGAATCCGGAAACGGTCAGCGATGGCTC
CGTTGATCCCTCCCTGGGTGACGATGATGCCACTGATCTACGCTGCGGCA
TGACCCTGACGCAGTTGCGCAGCATGGACAATCACATGGCCAGTATGCTG
CAGCAGCACGCGAAAAACGGCGGAGCCCTGCCCTACGGTCCACCAACTCC
GCCGGGGGGTCAGCAGCCCCAGGTGCCGAATGCCACGCCCCTGCACCATG
GACAACAGATGGGCGGCCAGGCGGGACATGCAACACATGCCGGACATGGT
CATCCTACGCATCATGGGCATGCGCCCTTCGGCTATCATAATGCATTTGG
CTTTGGCCAGGGCGGTCATGGGTATGGGCATCCGGAAGAGGCGGCGGGCA
ATTACTCAATTCGATGCACCAAATGGTCGAGGCCAAACAATTGCAGACCG
GAGCCAATGGGGCCAATCCACCGCCCGCTCCGCTGC
BO12609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10052-PA | 2622 | Rx-RA | 1..789 | 17..805 | 3920 | 99.8 | Plus |
| CG10052-PA | 2622 | Rx-RA | 790..871 | 805..886 | 360 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:20:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-RB | 3267 | CG10052-RB | 388..1259 | 16..886 | 4290 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20922458..20922899 | 446..886 | 2115 | 99.1 | Plus |
| 2R | 25286936 | 2R | 20917140..20917417 | 16..293 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 20918455..20918610 | 292..447 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:20:53 has no hits.
BO12609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:40:36 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:06 Download gff for
BO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10052-PA | 1..871 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:44 Download gff for
BO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 380..1259 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:31 Download gff for
BO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 380..1259 | 8..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:31 Download gff for
BO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20917132..20917417 | 8..293 | 98 | -> | Plus |
| 2R | 20918457..20918609 | 294..446 | 100 | -> | Plus |
| 2R | 20922459..20922899 | 447..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:44 Download gff for
BO12609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16804637..16804922 | 8..293 | 98 | -> | Plus |
| arm_2R | 16805962..16806114 | 294..446 | 100 | -> | Plus |
| arm_2R | 16809964..16810404 | 447..886 | 99 | | Plus |
BO12609.complete Sequence
2653 bp assembled on 2007-10-05
GenBank Submission: FJ638704
> BO12609.complete
GAAGTTATCAGTCGACATGTCCGGTTCAGGTGGTGTGGCCAACTCGTCCT
CCACAGCGGCGGCCAACAATACCGCCGCCACATTCCAGCACATCTTCGAG
CAGCTGGTACAGCAGGGCGGCGGAAACCACAAGCTGCCCCCCAAGCAGCT
GGAGCAACTGCGTCACCTGCTCGGCAACGTGAGGGACGCCAAGAATCTGC
AGATGATCGTGGAGAAGTTCAAGAATCTGGAGCAGTTCCACGAGCACTAC
GCCGCCCACCTGGCTAACAACAACACTGTGATCTCAACGGAAGATAGCAA
CGACTTGGTTAAGGATAATGCCAGGAAGTATGGATCTGGTGGACAAACGC
TAACGCCCCGCCACACAATCGATGCCATTCTGGGCCTAAAGAATCGCAAT
GGCGCGGCGAATGGCAGTGGCAGGAATCCGGAAACGGTCAGCGATGGCTC
CGTTGATCCCTCCCTGGGTGACGATGATGCCACTGATCTACGCTGCGGCA
TGACCCTGACGCAGTTGCGCAGCATGGACAATCACATGGCCAGTATGCTG
CAGCAGCACGCGAAAAACGGCGGAGCCCTGCCCTACGGTCCACCAACTCC
GCCGGGGGGTCAGCAGCCCCAGGTGCCGAATGCCACGCCCCTGCACCATG
GACAACAGATGGGCGGCCAGGCGGGACATGCAACACATGCCGGACATGGT
CATCCTACGCATCATGGGCATGCGCCCTTCGGCTATCATAATGCATTTGG
CTTTGGCCAGGGCGGTCATGGGTATGGGCATCCGGAGGAGGCGGCGGGCA
ATTACCTCAATTCGATGCACCAGATGGTCGAGGCCAATCAATTGCAGACC
GGAGCCAATGGGGCCAATCCACCGCCCGCTCCGCTGCCGCCCAGTTCCTT
TGGCAGTCATCAGCAGCATTTGGCCGCCTTGGCGGCTCAGGCGCAGGAGC
AGCAGAATCAACACAGCAAATACGCCAAGTCATCGCCCACTGGAGCGGGT
CCTCCTCCACCGCCGGGTGCCTACTTTATGGAATCCCAGACGGCGCCTGT
CGCCCCGTCGCAAATCAACTACGACGAGCGTTCAATGTCCTCGGCCAGCG
ATTTGGAGGAGGATGACGATGATGCGGCAAAGTTGCAGCTCGATGTGACC
TCGCCGCCCACTCCGTCGCCACGTGGTCAGCTGGCCGCCAAGCGCAAGTC
CGCCGGCGTCTTCTGTGATGATAATGAGCCAAAATTAGCCAACGGTCAGT
TGCCAGGCGGCAATTACGGCATTCGTCCGCGCAGCATGGAGGAGGTGCAT
CATCAGCAGCAATCGCATCACCATCAACAACAACAGCAGCAGCAGCAACA
GCAACAGCAACTGCAACAGCAGCAGGGCTTTCAGCACGACTTTCGCAACA
GTGGCAATGGGAATCCCAATGGCAACAGCAATTCCGGCGATCATGGCGAG
CGTTTGAACGCGGATAGCGACAGCTTGGTCAACGGCAGCTGTGCCTCCAG
CGAGGATCTCAACCAGACCAACAGCAGCGAGCAGGGCGAGAAGATCACCT
CCGGCAGCGACGACGAAGGTCAAGATGACAACTGCGCCAAGAAGAAACAC
CGTCGCAATCGGACCACCTTCACCACCTACCAGCTCCATGAGCTGGAGCG
GGCCTTCGAGAAGTCCCACTACCCCGATGTCTATTCCCGCGAGGAGCTGG
CCATGAAGGTGAACCTGCCCGAGGTCCGCGTCCAGGTGTGGTTCCAGAAT
CGCCGCGCCAAGTGGCGTCGCCAGGAGAAATCGGAGAGTCTTCGCCTGGG
CCTGACCCACTTCACCCAGCTGCCACATCGCCTGGGATGCGGTGCATCCG
GACTGCCCGTGGATCCCTGGCTATCACCACCACTGCTCAGCGCATTGCCA
GGCTTTCTCTCGCATCCGCAGACTGTGTACCCAAGCTATCTGACGCCGCC
GCTCAGCCTGGCGCCCGGAAATCTGACCATGAGCAGTCTGGCGGCCATGG
GCCACCACCATGCCCACAATGGGCCGCCGCCCCCGCACGTGGGTCACGGG
GGACATGGTCAGCCGCAGCCACCGCCACCGCCGCCGCCCCACGGAGTGCC
CCACCCACATGGCAGCCACCATGTGGTACCCCTTTCTCACCTCTCGCCGC
ACCTGTCACGCATGTCGCCGCATGCGACGTCCTTGGGCTCGCCCCACCAC
GGAGTGACCCCCCTCGGCACGCCGCTGCACAGCAGTCTGCCGCCCAGTTC
GACAGCCACCACCGTGGCCGTCTCATCCTCGCAGTCGTCCTCCTCCTCCG
CCTCGCTGGAGTGCAGCGGTCCGGATGTCTGCATGTCGCCGCAGAACCTG
AGCATTGGCAATGCCGATTCCAATGGCGATGGACGCGACCTGAGCAGCGA
CCTGGATGCCGGCAGCACCAGCAGCAATCCCGGCAGTAGTCTGGACAAGT
GCGCGGCCAGCGCCAACATAGAGCTGCTCGATGTGGGCCGGGATAGCCCA
CCACCTCCGCCCACTCCGACTGGCAAGGGTTCGAGCACACCGCCGACGGA
CATGCGAAGCAACTCGATCGCCACGCTGAGGATCAAGGCCAAGGAGCACC
TGGACAACCTGAACAAGGGAATGGTATCCATTGTCGCAAGCTTTCTAGAC
CAT
BO12609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-RB | 2714 | CG10052-PB | 92..2711 | 16..2635 | 13100 | 100 | Plus |
| CG11294-RB | 786 | CG11294-PB | 69..239 | 1597..1767 | 285 | 77.8 | Plus |
| CG11294-RA | 786 | CG11294-PA | 69..239 | 1597..1767 | 285 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:05:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-RB | 3267 | CG10052-RB | 388..3007 | 16..2635 | 13100 | 100 | Plus |
| CG11294-RB | 1291 | CG11294-RB | 226..396 | 1597..1767 | 285 | 77.8 | Plus |
| CG11294-RA | 1068 | CG11294-RA | 226..396 | 1597..1767 | 285 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20922458..20923582 | 446..1570 | 5625 | 100 | Plus |
| 2R | 25286936 | 2R | 20936034..20936770 | 1899..2635 | 3685 | 100 | Plus |
| 2R | 25286936 | 2R | 20917140..20917417 | 16..293 | 1390 | 100 | Plus |
| 2R | 25286936 | 2R | 20923753..20923924 | 1567..1738 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 20935678..20935849 | 1731..1902 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 20918455..20918610 | 292..447 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 18237836..18237990 | 1613..1767 | 235 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:05:17 has no hits.
BO12609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:51 Download gff for
BO12609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RA | 1..2622 | 17..2636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:26 Download gff for
BO12609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RA | 362..2980 | 17..2637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:50 Download gff for
BO12609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 389..3007 | 17..2637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:51 Download gff for
BO12609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RA | 353..2984 | 8..2641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:34 Download gff for
BO12609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rx-RB | 389..3007 | 17..2637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:34 Download gff for
BO12609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20917141..20917417 | 17..293 | 100 | -> | Plus |
| 2R | 20918457..20918609 | 294..446 | 100 | -> | Plus |
| 2R | 20922459..20923580 | 447..1568 | 100 | -> | Plus |
| 2R | 20923755..20923921 | 1569..1735 | 100 | -> | Plus |
| 2R | 20935683..20935848 | 1736..1901 | 100 | -> | Plus |
| 2R | 20936037..20936770 | 1902..2637 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:50 Download gff for
BO12609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16823188..16823353 | 1736..1901 | 100 | -> | Plus |
| arm_2R | 16804646..16804922 | 17..293 | 100 | -> | Plus |
| arm_2R | 16805962..16806114 | 294..446 | 100 | -> | Plus |
| arm_2R | 16809964..16811085 | 447..1568 | 100 | -> | Plus |
| arm_2R | 16811260..16811426 | 1569..1735 | 100 | -> | Plus |
| arm_2R | 16823542..16824275 | 1902..2637 | 99 | | Plus |
BO12609.pep Sequence
Translation from 16 to 2653
> BO12609.pep
MSGSGGVANSSSTAAANNTAATFQHIFEQLVQQGGGNHKLPPKQLEQLRH
LLGNVRDAKNLQMIVEKFKNLEQFHEHYAAHLANNNTVISTEDSNDLVKD
NARKYGSGGQTLTPRHTIDAILGLKNRNGAANGSGRNPETVSDGSVDPSL
GDDDATDLRCGMTLTQLRSMDNHMASMLQQHAKNGGALPYGPPTPPGGQQ
PQVPNATPLHHGQQMGGQAGHATHAGHGHPTHHGHAPFGYHNAFGFGQGG
HGYGHPEEAAGNYLNSMHQMVEANQLQTGANGANPPPAPLPPSSFGSHQQ
HLAALAAQAQEQQNQHSKYAKSSPTGAGPPPPPGAYFMESQTAPVAPSQI
NYDERSMSSASDLEEDDDDAAKLQLDVTSPPTPSPRGQLAAKRKSAGVFC
DDNEPKLANGQLPGGNYGIRPRSMEEVHHQQQSHHHQQQQQQQQQQQQLQ
QQQGFQHDFRNSGNGNPNGNSNSGDHGERLNADSDSLVNGSCASSEDLNQ
TNSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKS
HYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHFT
QLPHRLGCGASGLPVDPWLSPPLLSALPGFLSHPQTVYPSYLTPPLSLAP
GNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPPPPPPHGVPHPHGS
HHVVPLSHLSPHLSRMSPHATSLGSPHHGVTPLGTPLHSSLPPSSTATTV
AVSSSQSSSSSASLECSGPDVCMSPQNLSIGNADSNGDGRDLSSDLDAGS
TSSNPGSSLDKCAASANIELLDVGRDSPPPPPTPTGKGSSTPPTDMRSNS
IATLRIKAKEHLDNLNKGMVSIVASFLDH
BO12609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rx-PB | 904 | CG10052-PB | 32..904 | 1..873 | 4702 | 100 | Plus |
| al-PA | 408 | CG3935-PA | 67..390 | 510..861 | 375 | 33.5 | Plus |
| hbn-PA | 409 | CG33152-PA | 87..365 | 429..705 | 332 | 34.7 | Plus |
| ey-PB | 624 | CG1464-PB | 164..549 | 499..860 | 300 | 29.5 | Plus |
| ey-PA | 838 | CG1464-PA | 378..763 | 499..860 | 300 | 29.5 | Plus |
