Clone Sequence Records
BO12613.3prime Sequence
470 bp (469 high quality bases) assembled on 2006-05-08
> BO12613.3prime
ATGGTCTAGAAAGCTTGCGGGCCATAATAGCTGGCCGGCGGTCGGCTGAT
ACTTACGTCCCAGACAGGTGTGCTTGCGGAACTGCAGGAATCCCTCGACG
CAGCGGCATGCACCCTCCAGACAACTGCTATTGGCCACCTTCATGGAGCA
CTGCTCGCTCAGCTGGCAGTCGCCGCCAAGGAGCTGGGATGACAAACAGC
GCTTGGAATCCAACTGGACGAAGTAGGGGGCGCACTCGCAGTATCCGAGG
GCGGAGCAGCTGCTGCCCTTGATGAAATCCGTGCAGTCCATGTCATGCTG
GCACTTGTCGCCCAGCTCCAGGGATCGACTCGCGTCCACCACTGTGAAGA
TGATCAGCAGCGCTAAGAGCCGCTTAACCGTAAAAGCGTTTCCATTGAGC
ATTGCGATCGCAGGTTGCTTTCTCGATGTTGCCGACTGCCTCGCAGTCGC
CGTCATGTCGACTGATAACT
BO12613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32356-PB | 441 | ImpE1-RB | 1..438 | 456..19 | 2165 | 99.7 | Minus |
CG32356-PA | 4851 | ImpE1-RA | 1..400 | 456..57 | 2000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpE1-RB | 919 | CG32356-RB | 355..792 | 456..19 | 2175 | 99.8 | Minus |
ImpE1-RC | 6099 | CG32356-RC | 411..810 | 456..57 | 2000 | 100 | Minus |
ImpE1-RA | 6043 | CG32356-RA | 355..754 | 456..57 | 2000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8379144..8379316 | 361..189 | 865 | 100 | Minus |
3L | 28110227 | 3L | 8379854..8380023 | 188..19 | 835 | 99.4 | Minus |
3L | 28110227 | 3L | 8374976..8375071 | 456..361 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 14:51:03 has no hits.
BO12613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:39 Download gff for
BO12613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-PB | 1..441 | 15..456 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:10 Download gff for
BO12613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32356-PB | 1..441 | 15..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:20:24 Download gff for
BO12613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 348..797 | 11..463 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:16 Download gff for
BO12613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 348..797 | 11..463 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:16 Download gff for
BO12613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8374969..8375071 | 361..463 | 97 | -> | Minus |
3L | 8379145..8379316 | 189..360 | 100 | -> | Minus |
3L | 8379854..8380028 | 11..188 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:20:24 Download gff for
BO12613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8368069..8368171 | 361..463 | 97 | -> | Minus |
arm_3L | 8372245..8372416 | 189..360 | 100 | -> | Minus |
arm_3L | 8372954..8373128 | 11..188 | 97 | | Minus |
BO12613.5prime Sequence
470 bp (469 high quality bases) assembled on 2006-05-08
> BO12613.5prime
GAAGTTATCAGTCGACATGACGGCGACTGCGAGGCAGTCGGCAACATCGA
GAAAGCAACCTGCGATCGCAATGCTCAATGGAAACGCTTTTACGGTTAAG
CGGCTCTTAGCGCTGCTGATCATCTTCACAGTGGTGGACGCGAGTCGATC
CCTGGAGCTGGGCGACAAGTGCCAGCATGACATGGACTGCACGGATTTCA
TCAAGGGCAGCAGCTGCTCCGCCCTCGGATACTGCGAGTGCGCCCCCTAC
TTCGTCCAGTTGGATTCCAAGCGCTGTTTGTCATCCCAGCTCCTTGGCGG
CGACTGCCAGCTGAGCGAGCAGTGCTCCATGAAGGTGGCCAATAGCAGTT
GTCTGGAGGGTGCATGCCGCTGCGTCGAGGGATTCCTGCAGTTCCGCAAG
CACACCTGTCTGGGACGTAAGTATCAGCCGACCGCCGGCCAGCTATTGTG
GCCCGCAAGCTTTCTAGACC
BO12613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32356-PB | 441 | ImpE1-RB | 1..438 | 17..454 | 2190 | 100 | Plus |
CG32356-PA | 4851 | ImpE1-RA | 1..400 | 17..416 | 2000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpE1-RB | 919 | CG32356-RB | 355..792 | 17..454 | 2190 | 100 | Plus |
ImpE1-RC | 6099 | CG32356-RC | 411..810 | 17..416 | 2000 | 100 | Plus |
ImpE1-RA | 6043 | CG32356-RA | 355..754 | 17..416 | 2000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8379144..8379316 | 112..284 | 865 | 100 | Plus |
3L | 28110227 | 3L | 8379854..8380023 | 285..454 | 850 | 100 | Plus |
3L | 28110227 | 3L | 8374976..8375071 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:13:34 has no hits.
BO12613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:40 Download gff for
BO12613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-PB | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:11 Download gff for
BO12613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32356-PB | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:35 Download gff for
BO12613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 348..797 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:40 Download gff for
BO12613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 348..797 | 10..462 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:40 Download gff for
BO12613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8374969..8375071 | 10..112 | 97 | -> | Plus |
3L | 8379145..8379316 | 113..284 | 100 | -> | Plus |
3L | 8379854..8380028 | 285..462 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:35 Download gff for
BO12613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8368069..8368171 | 10..112 | 97 | -> | Plus |
arm_3L | 8372245..8372416 | 113..284 | 100 | -> | Plus |
arm_3L | 8372954..8373128 | 285..462 | 97 | | Plus |
BO12613.complete Sequence
472 bp assembled on 2006-10-11
GenBank Submission: FJ632506
> BO12613.complete
GAAGTTATCAGTCGACATGACGGCGACTGCGAGGCAGTCGGCAACATCGA
GAAAGCAACCTGCGATCGCAATGCTCAATGGAAACGCTTTTACGGTTAAG
CGGCTCTTAGCGCTGCTGATCATCTTCACAGTGGTGGACGCGAGTCGATC
CCTGGAGCTGGGCGACAAGTGCCAGCATGACATGGACTGCACGGATTTCA
TCAAGGGCAGCAGCTGCTCCGCCCTCGGATACTGCGAGTGCGCCCCCTAC
TTCGTCCAGTTGGATTCCAAGCGCTGTTTGTCATCCCAGCTCCTTGGCGG
CGACTGCCAGCTGAGCGAGCAGTGCTCCATGAAGGTGGCCAATAGCAGTT
GTCTGGAGGGTGCATGCCGCTGCGTCGAGGGATTCCTGCAGTTCCGCAAG
CACACCTGTCTGGGACGTAAGTATCAGCCGACCGCCGGCCAGCTATTGTG
GCCCGCAAGCTTTCTAGACCAT
BO12613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpE1-RB | 441 | CG32356-PB | 1..438 | 17..454 | 2190 | 100 | Plus |
ImpE1-RC | 4851 | CG32356-PC | 1..400 | 17..416 | 2000 | 100 | Plus |
ImpE1-RA | 4851 | CG32356-PA | 1..400 | 17..416 | 2000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpE1-RB | 919 | CG32356-RB | 355..792 | 17..454 | 2190 | 100 | Plus |
ImpE1-RC | 6099 | CG32356-RC | 411..810 | 17..416 | 2000 | 100 | Plus |
ImpE1-RA | 6043 | CG32356-RA | 355..754 | 17..416 | 2000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8379144..8379316 | 112..284 | 865 | 100 | Plus |
3L | 28110227 | 3L | 8379854..8380023 | 285..454 | 850 | 100 | Plus |
3L | 28110227 | 3L | 8374976..8375071 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:48:02 has no hits.
BO12613.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:10 Download gff for
BO12613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:02 Download gff for
BO12613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 344..793 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:37 Download gff for
BO12613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 355..792 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:11 Download gff for
BO12613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 344..793 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:43 Download gff for
BO12613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ImpE1-RB | 355..792 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:43 Download gff for
BO12613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8374976..8375071 | 17..112 | 100 | -> | Plus |
3L | 8379145..8379316 | 113..284 | 100 | -> | Plus |
3L | 8379854..8380023 | 285..456 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:37 Download gff for
BO12613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8372245..8372416 | 113..284 | 100 | -> | Plus |
arm_3L | 8372954..8373123 | 285..456 | 98 | | Plus |
arm_3L | 8368076..8368171 | 17..112 | 100 | -> | Plus |
BO12613.pep Sequence
Translation from 16 to 472
> BO12613.pep
MTATARQSATSRKQPAIAMLNGNAFTVKRLLALLIIFTVVDASRSLELGD
KCQHDMDCTDFIKGSSCSALGYCECAPYFVQLDSKRCLSSQLLGGDCQLS
EQCSMKVANSSCLEGACRCVEGFLQFRKHTCLGRKYQPTAGQLLWPASFL
DH
BO12613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ImpE1-PB | 146 | CG32356-PB | 1..146 | 1..146 | 775 | 100 | Plus |
ImpE1-PC | 1616 | CG32356-PC | 1..133 | 1..133 | 700 | 100 | Plus |
ImpE1-PA | 1616 | CG32356-PA | 1..133 | 1..133 | 700 | 100 | Plus |