Clone BO12613 Report

Search the DGRC for BO12613

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptImpE1-RB
Protein status:BO12613.pep: validated full length
Sequenced Size:472

Clone Sequence Records

BO12613.3prime Sequence

470 bp (469 high quality bases) assembled on 2006-05-08

> BO12613.3prime
ATGGTCTAGAAAGCTTGCGGGCCATAATAGCTGGCCGGCGGTCGGCTGAT
ACTTACGTCCCAGACAGGTGTGCTTGCGGAACTGCAGGAATCCCTCGACG
CAGCGGCATGCACCCTCCAGACAACTGCTATTGGCCACCTTCATGGAGCA
CTGCTCGCTCAGCTGGCAGTCGCCGCCAAGGAGCTGGGATGACAAACAGC
GCTTGGAATCCAACTGGACGAAGTAGGGGGCGCACTCGCAGTATCCGAGG
GCGGAGCAGCTGCTGCCCTTGATGAAATCCGTGCAGTCCATGTCATGCTG
GCACTTGTCGCCCAGCTCCAGGGATCGACTCGCGTCCACCACTGTGAAGA
TGATCAGCAGCGCTAAGAGCCGCTTAACCGTAAAAGCGTTTCCATTGAGC
ATTGCGATCGCAGGTTGCTTTCTCGATGTTGCCGACTGCCTCGCAGTCGC
CGTCATGTCGACTGATAACT

BO12613.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32356-PB 441 ImpE1-RB 1..438 456..19 2165 99.7 Minus
CG32356-PA 4851 ImpE1-RA 1..400 456..57 2000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE1-RB 919 CG32356-RB 355..792 456..19 2175 99.8 Minus
ImpE1-RC 6099 CG32356-RC 411..810 456..57 2000 100 Minus
ImpE1-RA 6043 CG32356-RA 355..754 456..57 2000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8379144..8379316 361..189 865 100 Minus
3L 28110227 3L 8379854..8380023 188..19 835 99.4 Minus
3L 28110227 3L 8374976..8375071 456..361 480 100 Minus
Blast to na_te.dros performed on 2015-02-10 14:51:03 has no hits.

BO12613.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:39 Download gff for BO12613.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpE1-PB 1..441 15..456 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:10 Download gff for BO12613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32356-PB 1..441 15..456 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:20:24 Download gff for BO12613.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 348..797 11..463 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:16 Download gff for BO12613.3prime
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 348..797 11..463 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:16 Download gff for BO12613.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8374969..8375071 361..463 97 -> Minus
3L 8379145..8379316 189..360 100 -> Minus
3L 8379854..8380028 11..188 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:20:24 Download gff for BO12613.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8368069..8368171 361..463 97 -> Minus
arm_3L 8372245..8372416 189..360 100 -> Minus
arm_3L 8372954..8373128 11..188 97   Minus

BO12613.5prime Sequence

470 bp (469 high quality bases) assembled on 2006-05-08

> BO12613.5prime
GAAGTTATCAGTCGACATGACGGCGACTGCGAGGCAGTCGGCAACATCGA
GAAAGCAACCTGCGATCGCAATGCTCAATGGAAACGCTTTTACGGTTAAG
CGGCTCTTAGCGCTGCTGATCATCTTCACAGTGGTGGACGCGAGTCGATC
CCTGGAGCTGGGCGACAAGTGCCAGCATGACATGGACTGCACGGATTTCA
TCAAGGGCAGCAGCTGCTCCGCCCTCGGATACTGCGAGTGCGCCCCCTAC
TTCGTCCAGTTGGATTCCAAGCGCTGTTTGTCATCCCAGCTCCTTGGCGG
CGACTGCCAGCTGAGCGAGCAGTGCTCCATGAAGGTGGCCAATAGCAGTT
GTCTGGAGGGTGCATGCCGCTGCGTCGAGGGATTCCTGCAGTTCCGCAAG
CACACCTGTCTGGGACGTAAGTATCAGCCGACCGCCGGCCAGCTATTGTG
GCCCGCAAGCTTTCTAGACC

BO12613.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32356-PB 441 ImpE1-RB 1..438 17..454 2190 100 Plus
CG32356-PA 4851 ImpE1-RA 1..400 17..416 2000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE1-RB 919 CG32356-RB 355..792 17..454 2190 100 Plus
ImpE1-RC 6099 CG32356-RC 411..810 17..416 2000 100 Plus
ImpE1-RA 6043 CG32356-RA 355..754 17..416 2000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8379144..8379316 112..284 865 100 Plus
3L 28110227 3L 8379854..8380023 285..454 850 100 Plus
3L 28110227 3L 8374976..8375071 17..112 480 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:13:34 has no hits.

BO12613.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:40 Download gff for BO12613.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpE1-PB 1..441 17..458 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:11 Download gff for BO12613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32356-PB 1..441 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:35 Download gff for BO12613.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 348..797 10..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:40 Download gff for BO12613.5prime
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 348..797 10..462 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:40 Download gff for BO12613.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8374969..8375071 10..112 97 -> Plus
3L 8379145..8379316 113..284 100 -> Plus
3L 8379854..8380028 285..462 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:35 Download gff for BO12613.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8368069..8368171 10..112 97 -> Plus
arm_3L 8372245..8372416 113..284 100 -> Plus
arm_3L 8372954..8373128 285..462 97   Plus

BO12613.complete Sequence

472 bp assembled on 2006-10-11

GenBank Submission: FJ632506

> BO12613.complete
GAAGTTATCAGTCGACATGACGGCGACTGCGAGGCAGTCGGCAACATCGA
GAAAGCAACCTGCGATCGCAATGCTCAATGGAAACGCTTTTACGGTTAAG
CGGCTCTTAGCGCTGCTGATCATCTTCACAGTGGTGGACGCGAGTCGATC
CCTGGAGCTGGGCGACAAGTGCCAGCATGACATGGACTGCACGGATTTCA
TCAAGGGCAGCAGCTGCTCCGCCCTCGGATACTGCGAGTGCGCCCCCTAC
TTCGTCCAGTTGGATTCCAAGCGCTGTTTGTCATCCCAGCTCCTTGGCGG
CGACTGCCAGCTGAGCGAGCAGTGCTCCATGAAGGTGGCCAATAGCAGTT
GTCTGGAGGGTGCATGCCGCTGCGTCGAGGGATTCCTGCAGTTCCGCAAG
CACACCTGTCTGGGACGTAAGTATCAGCCGACCGCCGGCCAGCTATTGTG
GCCCGCAAGCTTTCTAGACCAT

BO12613.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE1-RB 441 CG32356-PB 1..438 17..454 2190 100 Plus
ImpE1-RC 4851 CG32356-PC 1..400 17..416 2000 100 Plus
ImpE1-RA 4851 CG32356-PA 1..400 17..416 2000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE1-RB 919 CG32356-RB 355..792 17..454 2190 100 Plus
ImpE1-RC 6099 CG32356-RC 411..810 17..416 2000 100 Plus
ImpE1-RA 6043 CG32356-RA 355..754 17..416 2000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8379144..8379316 112..284 865 100 Plus
3L 28110227 3L 8379854..8380023 285..454 850 100 Plus
3L 28110227 3L 8374976..8375071 17..112 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:48:02 has no hits.

BO12613.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:10 Download gff for BO12613.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 1..441 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:02 Download gff for BO12613.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 344..793 10..462 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:37 Download gff for BO12613.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 355..792 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:11 Download gff for BO12613.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 344..793 10..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:43 Download gff for BO12613.complete
Subject Subject Range Query Range Percent Splice Strand
ImpE1-RB 355..792 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:43 Download gff for BO12613.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8374976..8375071 17..112 100 -> Plus
3L 8379145..8379316 113..284 100 -> Plus
3L 8379854..8380023 285..456 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:37 Download gff for BO12613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8372245..8372416 113..284 100 -> Plus
arm_3L 8372954..8373123 285..456 98   Plus
arm_3L 8368076..8368171 17..112 100 -> Plus

BO12613.pep Sequence

Translation from 16 to 472

> BO12613.pep
MTATARQSATSRKQPAIAMLNGNAFTVKRLLALLIIFTVVDASRSLELGD
KCQHDMDCTDFIKGSSCSALGYCECAPYFVQLDSKRCLSSQLLGGDCQLS
EQCSMKVANSSCLEGACRCVEGFLQFRKHTCLGRKYQPTAGQLLWPASFL
DH

BO12613.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
ImpE1-PB 146 CG32356-PB 1..146 1..146 775 100 Plus
ImpE1-PC 1616 CG32356-PC 1..133 1..133 700 100 Plus
ImpE1-PA 1616 CG32356-PA 1..133 1..133 700 100 Plus