Clone Sequence Records
BO12615.3prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-08
> BO12615.3prime
ATGGTCTAGAAAGCTTGCAACCACATTAACACTAGAATCGCTCCCCGATG
TGAATAAATTCGTAGTTGCCGGGAGTTGCTGTGCCAGTTTTCCTAGGAGG
TCGTCCACGTAGGTCTTTTGTTTTTCGGATATAACGTTGAGTGGAGCGCC
TTGATGCTCCAAATATGTGAAGTGTGCTTTATTTGTTGCATCTGCCAGTT
GGAGTTTTTGATAAGCTTCTCGTTCTGCATTCCATTCGGAGCTTTCAGCT
CCCGCCGCATTGCTTATGGTTTCATAGAAGGCACTCAGTTTGGCCAGTTC
GAATCCAGTTTTAAAGCCATTCTCAAAGCCTTCATCGAAGCTCTCTTGGA
AGACCTTTTCCCTGCCATCGGCAACGCCATCTGCATAGCTTATCTTTGCC
ACCTTTTCCTGCACACGATGATAATTAGTCGAGCTGATCTCTTTAAACTC
AGTTTCATCATCAGAATCCCCAAGTGCCGACATGTCGACTGATAACT
BO12615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31142-PA | 468 | CG31142-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:27:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31142-RA | 644 | CG31142-RA | 81..545 | 483..19 | 2325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23929512..23929889 | 396..19 | 1890 | 100 | Minus |
3R | 32079331 | 3R | 23929323..23929417 | 483..389 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:27:16 has no hits.
BO12615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:43 Download gff for
BO12615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-PA | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:16 Download gff for
BO12615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-PA | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:55 Download gff for
BO12615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 81..548 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:10 Download gff for
BO12615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 81..548 | 15..483 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:10 Download gff for
BO12615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23929323..23929412 | 394..483 | 100 | -> | Minus |
3R | 23929515..23929892 | 15..393 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:55 Download gff for
BO12615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19755045..19755134 | 394..483 | 100 | -> | Minus |
arm_3R | 19755237..19755614 | 15..393 | 99 | | Minus |
BO12615.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-08
> BO12615.5prime
GAAGTTATCAGTCGACATGTCGGCACTTGGGGATTCTGATGATGAAACTG
AGTTTAAAGAGATCAGCTCGACTAATTATCATCGTGTGCAGGAAAAGGTG
GCAAAGATAAGCTATGCAGATGGCGTTGCCGATGGCAGGGAAAAGGTCTT
CCAAGAGAGCTTCGATGAAGGCTTTGAGAATGGCTTTAAAACTGGATTCG
AACTGGCCAAACTGAGTGCCTTCTATGAAACCATAAGCAATGCGGCGGGA
GCTGAAAGCTCCGAATGGAATGCAGAACGAGAAGCTTATCAAAAACTCCA
ACTGGCAGATGCAACAAATAAAGCACACTTCACATATTTGGAGCATCAAG
GCGCTCCACTCAACGTTATATCCGAAAAACAAAAGACCTACGTGGACGAC
CTCCTAGGAAAACTGGCACAGCAACTCCCGGCAACTACGAATTTATTCAC
ATCGGGGAGCGATTCTAGTGTTAATGTGGTTGCAAGCTTTCTAGACC
BO12615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31142-PA | 468 | CG31142-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31142-RA | 644 | CG31142-RA | 81..545 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23929512..23929889 | 104..481 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 23929323..23929417 | 17..111 | 460 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:49:57 has no hits.
BO12615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:44 Download gff for
BO12615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-PA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:17 Download gff for
BO12615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-PA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:39 Download gff for
BO12615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 81..548 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:26:09 Download gff for
BO12615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 81..548 | 17..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:26:09 Download gff for
BO12615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23929323..23929412 | 17..106 | 100 | -> | Plus |
3R | 23929515..23929892 | 107..485 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:39 Download gff for
BO12615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19755045..19755134 | 17..106 | 100 | -> | Plus |
arm_3R | 19755237..19755614 | 107..485 | 99 | | Plus |
BO12615.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ632507
> BO12615.complete
GAAGTTATCAGTCGACATGTCGGCACTTGGGGATTCTGATGATGAAACTG
AGTTTAAAGAGATCAGCTCGACTAATTATCATCGTGTGCAGGAAAAGGTG
GCAAAGATAAGCTATGCAGATGGCGTTGCCGATGGCAGGGAAAAGGTCTT
CCAAGAGAGCTTCGATGAAGGCTTTGAGAATGGCTTTAAAACTGGATTCG
AACTGGCCAAACTGAGTGCCTTCTATGAAACCATAAGCAATGCGGCGGGA
GCTGAAAGCTCCGAATGGAATGCAGAACGAGAAGCTTATCAAAAACTCCA
ACTGGCAGATGCAACAAATAAAGCACACTTCACATATTTGGAGCATCAAG
GCGCTCCACTCAACGTTATATCCGAAAAACAAAAGACCTACGTGGACGAC
CTCCTAGGAAAACTGGCACAGCAACTCCCGGCAACTACGAATTTATTCAC
ATCGGGGAGCGATTCTAGTGTTAATGTGGTTGCAAGCTTTCTAGACCAT
BO12615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31142-RA | 468 | CG31142-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31142-RA | 644 | CG31142-RA | 81..545 | 17..481 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23929512..23929889 | 104..481 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 23929323..23929417 | 17..111 | 460 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:02:09 has no hits.
BO12615.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:52 Download gff for
BO12615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:09 Download gff for
BO12615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 74..541 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:02 Download gff for
BO12615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 81..545 | 17..483 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:53 Download gff for
BO12615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 74..541 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:52 Download gff for
BO12615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31142-RA | 81..545 | 17..483 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:52 Download gff for
BO12615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23929323..23929412 | 17..106 | 100 | -> | Plus |
3R | 23929515..23929889 | 107..483 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:02 Download gff for
BO12615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19755045..19755134 | 17..106 | 100 | -> | Plus |
arm_3R | 19755237..19755611 | 107..483 | 99 | | Plus |
BO12615.pep Sequence
Translation from 16 to 499
> BO12615.pep
MSALGDSDDETEFKEISSTNYHRVQEKVAKISYADGVADGREKVFQESFD
EGFENGFKTGFELAKLSAFYETISNAAGAESSEWNAEREAYQKLQLADAT
NKAHFTYLEHQGAPLNVISEKQKTYVDDLLGKLAQQLPATTNLFTSGSDS
SVNVVASFLDH
BO12615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31142-PA | 155 | CG31142-PA | 1..155 | 1..155 | 786 | 100 | Plus |