Clone BO12615 Report

Search the DGRC for BO12615

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG31142-RA
Protein status:BO12615.pep: validated full length
Sequenced Size:499

Clone Sequence Records

BO12615.3prime Sequence

497 bp (496 high quality bases) assembled on 2006-05-08

> BO12615.3prime
ATGGTCTAGAAAGCTTGCAACCACATTAACACTAGAATCGCTCCCCGATG
TGAATAAATTCGTAGTTGCCGGGAGTTGCTGTGCCAGTTTTCCTAGGAGG
TCGTCCACGTAGGTCTTTTGTTTTTCGGATATAACGTTGAGTGGAGCGCC
TTGATGCTCCAAATATGTGAAGTGTGCTTTATTTGTTGCATCTGCCAGTT
GGAGTTTTTGATAAGCTTCTCGTTCTGCATTCCATTCGGAGCTTTCAGCT
CCCGCCGCATTGCTTATGGTTTCATAGAAGGCACTCAGTTTGGCCAGTTC
GAATCCAGTTTTAAAGCCATTCTCAAAGCCTTCATCGAAGCTCTCTTGGA
AGACCTTTTCCCTGCCATCGGCAACGCCATCTGCATAGCTTATCTTTGCC
ACCTTTTCCTGCACACGATGATAATTAGTCGAGCTGATCTCTTTAAACTC
AGTTTCATCATCAGAATCCCCAAGTGCCGACATGTCGACTGATAACT

BO12615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31142-PA 468 CG31142-RA 1..465 483..19 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31142-RA 644 CG31142-RA 81..545 483..19 2325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23929512..23929889 396..19 1890 100 Minus
3R 32079331 3R 23929323..23929417 483..389 460 98.9 Minus
Blast to na_te.dros performed on 2015-02-03 07:27:16 has no hits.

BO12615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:43 Download gff for BO12615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31142-PA 1..468 15..483 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:16 Download gff for BO12615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31142-PA 1..468 15..483 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:55 Download gff for BO12615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 81..548 15..483 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:10 Download gff for BO12615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 81..548 15..483 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:10 Download gff for BO12615.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23929323..23929412 394..483 100 -> Minus
3R 23929515..23929892 15..393 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:55 Download gff for BO12615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19755045..19755134 394..483 100 -> Minus
arm_3R 19755237..19755614 15..393 99   Minus

BO12615.5prime Sequence

497 bp (496 high quality bases) assembled on 2006-05-08

> BO12615.5prime
GAAGTTATCAGTCGACATGTCGGCACTTGGGGATTCTGATGATGAAACTG
AGTTTAAAGAGATCAGCTCGACTAATTATCATCGTGTGCAGGAAAAGGTG
GCAAAGATAAGCTATGCAGATGGCGTTGCCGATGGCAGGGAAAAGGTCTT
CCAAGAGAGCTTCGATGAAGGCTTTGAGAATGGCTTTAAAACTGGATTCG
AACTGGCCAAACTGAGTGCCTTCTATGAAACCATAAGCAATGCGGCGGGA
GCTGAAAGCTCCGAATGGAATGCAGAACGAGAAGCTTATCAAAAACTCCA
ACTGGCAGATGCAACAAATAAAGCACACTTCACATATTTGGAGCATCAAG
GCGCTCCACTCAACGTTATATCCGAAAAACAAAAGACCTACGTGGACGAC
CTCCTAGGAAAACTGGCACAGCAACTCCCGGCAACTACGAATTTATTCAC
ATCGGGGAGCGATTCTAGTGTTAATGTGGTTGCAAGCTTTCTAGACC

BO12615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31142-PA 468 CG31142-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31142-RA 644 CG31142-RA 81..545 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23929512..23929889 104..481 1890 100 Plus
3R 32079331 3R 23929323..23929417 17..111 460 98.9 Plus
Blast to na_te.dros performed on 2015-02-02 10:49:57 has no hits.

BO12615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:40:44 Download gff for BO12615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31142-PA 1..468 17..485 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:17 Download gff for BO12615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31142-PA 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:57:39 Download gff for BO12615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 81..548 17..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:26:09 Download gff for BO12615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 81..548 17..485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:26:09 Download gff for BO12615.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23929323..23929412 17..106 100 -> Plus
3R 23929515..23929892 107..485 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:57:39 Download gff for BO12615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19755045..19755134 17..106 100 -> Plus
arm_3R 19755237..19755614 107..485 99   Plus

BO12615.complete Sequence

499 bp assembled on 2006-10-11

GenBank Submission: FJ632507

> BO12615.complete
GAAGTTATCAGTCGACATGTCGGCACTTGGGGATTCTGATGATGAAACTG
AGTTTAAAGAGATCAGCTCGACTAATTATCATCGTGTGCAGGAAAAGGTG
GCAAAGATAAGCTATGCAGATGGCGTTGCCGATGGCAGGGAAAAGGTCTT
CCAAGAGAGCTTCGATGAAGGCTTTGAGAATGGCTTTAAAACTGGATTCG
AACTGGCCAAACTGAGTGCCTTCTATGAAACCATAAGCAATGCGGCGGGA
GCTGAAAGCTCCGAATGGAATGCAGAACGAGAAGCTTATCAAAAACTCCA
ACTGGCAGATGCAACAAATAAAGCACACTTCACATATTTGGAGCATCAAG
GCGCTCCACTCAACGTTATATCCGAAAAACAAAAGACCTACGTGGACGAC
CTCCTAGGAAAACTGGCACAGCAACTCCCGGCAACTACGAATTTATTCAC
ATCGGGGAGCGATTCTAGTGTTAATGTGGTTGCAAGCTTTCTAGACCAT

BO12615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31142-RA 468 CG31142-PA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31142-RA 644 CG31142-RA 81..545 17..481 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23929512..23929889 104..481 1890 100 Plus
3R 32079331 3R 23929323..23929417 17..111 460 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 16:02:09 has no hits.

BO12615.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:52 Download gff for BO12615.complete
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:27:09 Download gff for BO12615.complete
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 74..541 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:02 Download gff for BO12615.complete
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 81..545 17..483 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:53 Download gff for BO12615.complete
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 74..541 17..485 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:52 Download gff for BO12615.complete
Subject Subject Range Query Range Percent Splice Strand
CG31142-RA 81..545 17..483 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:52 Download gff for BO12615.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23929323..23929412 17..106 100 -> Plus
3R 23929515..23929889 107..483 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:02 Download gff for BO12615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19755045..19755134 17..106 100 -> Plus
arm_3R 19755237..19755611 107..483 99   Plus

BO12615.pep Sequence

Translation from 16 to 499

> BO12615.pep
MSALGDSDDETEFKEISSTNYHRVQEKVAKISYADGVADGREKVFQESFD
EGFENGFKTGFELAKLSAFYETISNAAGAESSEWNAEREAYQKLQLADAT
NKAHFTYLEHQGAPLNVISEKQKTYVDDLLGKLAQQLPATTNLFTSGSDS
SVNVVASFLDH

BO12615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31142-PA 155 CG31142-PA 1..155 1..155 786 100 Plus