Clone Sequence Records
BO12628.3prime Sequence
868 bp (810 high quality bases) assembled on 2006-05-08
> BO12628.3prime
ATGGTCTAGAAAGCTTGCTTTAGAAATAGCAGCGCTATCATTTTTGGCAT
GGTGTGATTCTTTCTGGTCCGAGTAAATCTTTGCCATTACCAACTTGGAG
CGCACGATGTGAAACTTTCGCATTTCCTCCAGGTCCTCCATCTGCACCAC
CATGTTATGCTTACGCTCCAGGTGCATGCGTAGTTTGTTACGAGCTGGAT
AGCTCTGATGGCAGTGGGCGCACTCAAATGGCATGGCCGTATGCGTGCAC
TCGTGATTCCTGAGAGATGAAGATGAGGTAAAGGACTTCTGGCAGCCGGG
AAACTCGCAAATGAAGCGAGATCCAGAGTGCTTAACCTGCTGGTGGACAG
TCAAATGGGATCGCTGTGCGAAACGACGATCACAGAGATCACAGGAATAG
GGAAAGTCTCTGTTATGATAGCGTTTATGAATCTCCAGGGCTTTGGCAAT
GGCAAAAACCTTGCCGCATGTGTCGCAGTGGACTCCAGACTGCCTGTGCT
TCGAATCGACGTGAACTTTCAGCGCCTGCTTTGTGAGGTAAACCCGGTCG
CACTGGCTGCAACGAAAGTTGGGACGATTGGCCAAATGAATCATCTGGTG
CTTGGCCATGCGGGAATGGTTCCTGAACTCCTTGTGGCAGAACTTGCAGT
TGGATTTTCCCGTATGCCGATTGCGTGGCACAATGTCCTCTAAGCTGTCG
ATAGGGGTTTCCTGCTTCTCCTCAATCTCTTCCATCAGGAACTCTTCATT
CATATCCGCCTCATTCTCCTCATCCTCCACGTCGTCTTCCTGTTCCGTGT
TGGCTTCGGTTGCCCACAATATCTCCCCTCACTGCTGATTGGCAATGGCC
ATTTTCCTTGTGGAAGTC
BO12628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-PA | 1179 | CG4730-RA | 381..1176 | 814..19 | 3980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-RC | 1502 | CG4730-RC | 425..1273 | 868..19 | 4135 | 99.4 | Minus |
| CG4730-RB | 1397 | CG4730-RB | 320..1168 | 868..19 | 4135 | 99.4 | Minus |
| CG4730-RA | 1492 | CG4730-RA | 415..1263 | 868..19 | 4135 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25677528..25678210 | 185..868 | 3280 | 99 | Plus |
| 3R | 32079331 | 3R | 25677301..25677466 | 19..184 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:51:00 has no hits.
BO12628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:06 Download gff for
BO12628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-PA | 328..1179 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:47 Download gff for
BO12628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-PA | 328..1179 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:17 Download gff for
BO12628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 415..1266 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:17 Download gff for
BO12628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 415..1266 | 15..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:17 Download gff for
BO12628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25677297..25677466 | 15..184 | 98 | <- | Plus |
| 3R | 25677528..25678210 | 185..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:17 Download gff for
BO12628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21503019..21503188 | 15..184 | 98 | <- | Plus |
| arm_3R | 21503250..21503932 | 185..868 | 99 | | Plus |
BO12628.5prime Sequence
874 bp (773 high quality bases) assembled on 2006-05-08
> BO12628.5prime
GAAGTTATCAGTCGACATGGATCCCCAAACATCAAAAGTATGCCAAACGC
TTAATTTTACAATAGCAAGGCGAACTGCAGAAGCTCCCGTGAAGCTTGTA
TCCCATGAAGTCTCACTTTCAGACAGTACTACTTCTTTGGAGCTGAGCAA
TTGCTGCCGCTTGTGTTTGGAGGAGCCGTATCCCAACCAAATGCTGGACA
TGACCGTCATCTATGACCAGGAGGCGGCGCTGAGTTACTACGACTGCTAC
GAGATCTGCACCAAGGAAGACCTGCGGCAAAATCCCAAAAACGAGCCACG
AACCTTGTGCAAACGTTGTGCGGTGGAACTGAAATGGGCCTACGACTTCC
ACAAGAAAATGGCCATTGCCAATCAGCAGTTGAGGGAGATATTTGTGGCA
ACCGAAGCCAACACGGAACAGGAAGACGACGTGGAGGATGAGGAGAATGA
GGCGGATATGAATGAAGAGTTCCTGATGGAAGAGATTGAGGAGAAGCAGG
AAACCCCTATCGACAGCTTAGAGGACATTGTGCCACGCAATCGGCATACG
GGAAAATCCAACTGCAAGTTCTGCCACAAGGAGTTCAGGAACCATTCCCG
CATGGCCAAGCACCAGATGATTCATTTGGCCAATCGTCCCAACTTTCGTT
GCAGCCAGTGCGACCGGGTTTACCTCACAAAGCAGGCGCTGAAAGTTCAC
GTCGATTCGAAGCACAGGCAGTCTGGAGTCCACTGCGACACATGCGGCAA
GGTTTTTGCCATTGCCAAAGCCCTGGAGATTCATAAACGCTATCATAACA
GAGACTTTCCCTATTCCTGTGATCTCTGTGATCGTCGTTTCGCACAGCGA
TCCCATTTGACTGTCCACCAGCAG
BO12628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-PA | 1179 | CG4730-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-RC | 1502 | CG4730-RC | 98..955 | 17..874 | 4290 | 100 | Plus |
| CG4730-RA | 1492 | CG4730-RA | 88..945 | 17..874 | 4290 | 100 | Plus |
| CG4730-RB | 1397 | CG4730-RB | 97..850 | 121..874 | 3770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25677680..25678537 | 874..17 | 4290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:34:19 has no hits.
BO12628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:07 Download gff for
BO12628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:18:49 Download gff for
BO12628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:15 Download gff for
BO12628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 81..945 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:05 Download gff for
BO12628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 81..945 | 9..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:05 Download gff for
BO12628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25677680..25678542 | 9..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:15 Download gff for
BO12628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21503402..21504264 | 9..874 | 99 | | Minus |
BO12628.complete Sequence
1210 bp assembled on 2006-12-18
GenBank Submission: FJ632508
> BO12628.complete
GAAGTTATCAGTCGACATGGATCCCCAAACATCAAAAGTATGCCAAACGC
TTAATTTTACAATAGCAAGGCGAACTGCAGAAGCTCCCGTGAAGCTTGTA
TCCCATGAAGTCTCACTTTCAGACAGTACTACTTCTTTGGAGCTGAGCAA
TTGCTGCCGCTTGTGTTTGGAGGAGCCGTATCCCAACCAAATGCTGGACA
TGACCGTCATCTATGACCAGGAGGCGGCGCTGAGTTACTACGACTGCTAC
GAGATCTGCACCAAGGAAGACCTGCGGCAAAATCCCAAAAACGAGCCACG
AACCTTGTGCAAACGTTGTGCGGTGGAACTGAAATGGGCCTACGACTTCC
ACAAGAAAATGGCCATTGCCAATCAGCAGTTGAGGGAGATATTTGTGGCA
ACCGAAGCCAACACGGAACAGGAAGACGACGTGGAGGATGAGGAGAATGA
GGCGGATATGAATGAAGAGTTCCTGATGGAAGAGATTGAGGAGAAGCAGG
AAACCCCTATCGACAGCTTAGAGGACATTGTGCCACGCAATCGGCATACG
GGAAAATCCAACTGCAAGTTCTGCCACAAGGAGTTCAGGAACCATTCCCG
CATGGCCAAGCACCAGATGATTCATTTGGCCAATCGTCCCAACTTTCGTT
GCAGCCAGTGCGACCGGGTTTACCTCACAAAGCAGGCGCTGAAAGTTCAC
GTCGATTCGAAGCACAGGCAGTCTGGAGTCCACTGCGACACATGCGGCAA
GGTTTTTGCCATTGCCAAAGCCCTGGAGATTCATAAACGCTATCATAACA
GAGACTTTCCCTATTCCTGTGATCTCTGTGATCGTCGTTTCGCACAGCGA
TCCCATTTGACTGTCCACCAGCAGGTTAAGCACTCTGGATCTCGCTTCAT
TTGCGAGTTTCCCGGCTGCCAGAAGTCCTTTACCTCATCTTCATCTCTCA
GGAATCACGAGTGCACGCATACGGCCATGCCATTTGAGTGCGCCCACTGC
CATCAGAGCTATCCAGCTCGTAACAAACTACGCATGCACCTGGAGCGTAA
GCATAACATGGTGGTGCAGATGGAGGACCTGGAGGAAATGCGAAAGTTTC
ACATCGTGCGCTCCAAGTTGGTAATGGCAAAGATTTACTCGGACCAGAAA
GAATCACACCATGCCAAAAATGATAGCGCTGCTATTTCTAAAGCAAGCTT
TCTAGACCAT
BO12628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-RC | 1179 | CG4730-PC | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| CG4730-RA | 1179 | CG4730-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| CG4730-RB | 1005 | CG4730-PB | 1..1002 | 191..1192 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-RC | 1502 | CG4730-RC | 98..1273 | 17..1192 | 5880 | 100 | Plus |
| CG4730-RA | 1492 | CG4730-RA | 88..1263 | 17..1192 | 5880 | 100 | Plus |
| CG4730-RB | 1397 | CG4730-RB | 97..1168 | 121..1192 | 5360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25677528..25678537 | 1026..17 | 5050 | 100 | Minus |
| 3R | 32079331 | 3R | 25677301..25677466 | 1192..1027 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:03:02 has no hits.
BO12628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:10 Download gff for
BO12628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 1..1179 | 17..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:10 Download gff for
BO12628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 80..1265 | 9..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:17 Download gff for
BO12628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 88..1263 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:11 Download gff for
BO12628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 80..1265 | 9..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:11 Download gff for
BO12628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 88..1263 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:11 Download gff for
BO12628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25677299..25677466 | 1027..1194 | 98 | <- | Minus |
| 3R | 25677528..25678537 | 17..1026 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:17 Download gff for
BO12628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21503021..21503188 | 1027..1194 | 98 | <- | Minus |
| arm_3R | 21503250..21504259 | 17..1026 | 100 | | Minus |
BO12628.pep Sequence
Translation from 16 to 1210
> BO12628.pep
MDPQTSKVCQTLNFTIARRTAEAPVKLVSHEVSLSDSTTSLELSNCCRLC
LEEPYPNQMLDMTVIYDQEAALSYYDCYEICTKEDLRQNPKNEPRTLCKR
CAVELKWAYDFHKKMAIANQQLREIFVATEANTEQEDDVEDEENEADMNE
EFLMEEIEEKQETPIDSLEDIVPRNRHTGKSNCKFCHKEFRNHSRMAKHQ
MIHLANRPNFRCSQCDRVYLTKQALKVHVDSKHRQSGVHCDTCGKVFAIA
KALEIHKRYHNRDFPYSCDLCDRRFAQRSHLTVHQQVKHSGSRFICEFPG
CQKSFTSSSSLRNHECTHTAMPFECAHCHQSYPARNKLRMHLERKHNMVV
QMEDLEEMRKFHIVRSKLVMAKIYSDQKESHHAKNDSAAISKASFLDH
BO12628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-PC | 392 | CG4730-PC | 1..392 | 1..392 | 2115 | 100 | Plus |
| CG4730-PA | 392 | CG4730-PA | 1..392 | 1..392 | 2115 | 100 | Plus |
| CG4730-PB | 334 | CG4730-PB | 1..334 | 59..392 | 1812 | 100 | Plus |
| CG7372-PA | 971 | CG7372-PA | 574..836 | 130..362 | 292 | 28.9 | Plus |
| Meics-PB | 571 | CG8474-PB | 279..447 | 174..342 | 283 | 31.4 | Plus |
