Clone BO12633 Report

Search the DGRC for BO12633

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG13060-RA
Protein status:BO12633.pep:
Sequenced Size:427

Clone Sequence Records

BO12633.3prime Sequence

425 bp (424 high quality bases) assembled on 2006-05-08

> BO12633.3prime
ATGGTCTAGAAAGCTTGCGTGCTGCAGGGTGTAGGCCAGAGGAGCGGAGT
GCACCACTGACTTGACGAGGGGAGCGGAGTGAAGCACCGAGTGCACCACA
GGAGCGGAGTGAACGGAGTGGACGACAGGAGCGGCGTGGACAACGGGCAC
GGAGTGAACCACTGGAGCAGCATGGACGGCAACGGCGGGATGGGAGTAGG
TGGTGGTCTTCACGATAGGAGCAACCACTGGCTGCACCACCGCCTTGCTG
TGCACCTGGGTGATGCTCTGGTGGGAAACCGCCGAGGGAGCAGAGTGCAC
CACCGATCCAACCTTGGCCAGAACGGGCTCGTGCACCACATGGTGAGTCT
CGATGAGACCAGCACTGGCGGTGGCGACCAGGAGAGCGATGACGCCGATA
AATTTGAACATGTCGACTGATAACT

BO12633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13060-PA 396 CG13060-RA 1..389 411..23 1945 100 Minus
CG13041-PA 375 CG13041-RA 19..296 393..116 1315 98.9 Minus
CG13041-PA 375 CG13041-RA 310..368 81..23 220 94.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG13060-RA 539 CG13060-RA 71..473 411..9 1955 99 Minus
CG13041-RA 513 CG13041-RA 68..439 411..19 1415 91.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16319998..16320388 399..9 1895 99 Minus
3L 28110227 3L 16319104..16319381 116..393 1345 98.9 Plus
3L 28110227 3L 16319028..16319090 19..81 255 93.7 Plus
Blast to na_te.dros performed on 2015-02-02 20:32:16 has no hits.

BO12633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:17 Download gff for BO12633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-PA 1..396 15..411 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:02 Download gff for BO12633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-PA 1..396 15..411 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:13 Download gff for BO12633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 63..473 9..421 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:26 Download gff for BO12633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 63..473 9..421 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:26 Download gff for BO12633.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16319998..16320388 9..399 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:13 Download gff for BO12633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16313098..16313488 9..399 98   Minus

BO12633.5prime Sequence

425 bp (424 high quality bases) assembled on 2006-05-08

> BO12633.5prime
GAAGTTATCAGTCGACATGTTCAAATTTATCGGCGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCTATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCATGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
TGTCGTCCACTCCGTTCACTCCGCTCCTGTGGTGCACTCGGTGCTTCACT
CCGCTCCCCTCGTCAAGTCAGTGGTGCACTCCGCTCCTCTGGCCTACACC
CTGCACCACGCAAGCTTTCTAGACC

BO12633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13060-PA 396 CG13060-RA 1..393 17..409 1965 100 Plus
CG13041-PA 375 CG13041-RA 19..296 35..312 1315 98.9 Plus
CG13041-PA 375 CG13041-RA 310..372 347..409 240 95.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13060-RA 539 CG13060-RA 71..473 17..419 1970 99.3 Plus
CG13041-RA 513 CG13041-RA 68..439 17..409 1430 91.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16319998..16320388 29..419 1910 99.2 Plus
3L 28110227 3L 16319104..16319381 312..35 1345 98.9 Minus
3L 28110227 3L 16319028..16319090 409..347 270 95.2 Minus
Blast to na_te.dros performed on 2015-02-11 11:53:36 has no hits.

BO12633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:18 Download gff for BO12633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-PA 1..396 17..413 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:03 Download gff for BO12633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-PA 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:48 Download gff for BO12633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 63..473 7..419 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:00 Download gff for BO12633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 63..473 7..419 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:00 Download gff for BO12633.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16319998..16320388 29..419 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:48 Download gff for BO12633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16313098..16313488 29..419 99   Plus

BO12633.complete Sequence

427 bp assembled on 2007-06-22

GenBank Submission: FJ632509

> BO12633.complete
GAAGTTATCAGTCGACATGTTCAAATTTATCGGCGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCTATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCATGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
TGTCGTCCACTCCGTTCACTCCGCTCCTGTGGTGCACTCGGTGCTTCACT
CCGCTCCCCTCGTCAAGTCAGTGGTGCACTCCGCTCCTCTGGCCTACACC
CTGCACCACGCAAGCTTTCTAGACCAT

BO12633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13060-RA 396 CG13060-PA 1..393 17..409 1965 100 Plus
CG13041-RA 375 CG13041-PA 1..296 17..312 1375 97.6 Plus
CG13041-RA 375 CG13041-PA 310..372 347..409 270 95.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13060-RA 539 CG13060-RA 71..473 17..419 1970 99.3 Plus
CG13041-RA 513 CG13041-RA 68..363 17..312 1375 97.6 Plus
CG13041-RA 513 CG13041-RA 377..439 347..409 270 95.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16319998..16320388 29..419 1910 99.2 Plus
3L 28110227 3L 16319104..16319381 312..35 1345 98.9 Minus
3L 28110227 3L 16319028..16319090 409..347 270 95.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:52:31 has no hits.

BO12633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:17 Download gff for BO12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:26 Download gff for BO12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 58..468 7..419 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:18 Download gff for BO12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 76..463 22..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:18 Download gff for BO12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 58..468 7..419 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:37 Download gff for BO12633.complete
Subject Subject Range Query Range Percent Splice Strand
CG13060-RA 76..463 22..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:37 Download gff for BO12633.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16319998..16320378 29..411 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:18 Download gff for BO12633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16313098..16313478 29..411 99   Plus

BO12633.pep Sequence

Translation from 16 to 427

> BO12633.pep
MFKFIGVIALLVATASAGLIETHHVVHEPVLAKVGSVVHSAPSAVSHQSI
TQVHSKAVVQPVVAPIVKTTTYSHPAVAVHAAPVVHSVPVVHAAPVVHSV
HSAPVVHSVLHSAPLVKSVVHSAPLAYTLHHASFLDH

BO12633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13060-PA 131 CG13060-PA 1..131 1..131 659 100 Plus
CG13041-PA 124 CG13041-PA 1..124 1..131 584 90.8 Plus
CG13044-PA 155 CG13044-PA 1..146 1..132 263 50 Plus
CG13040-PB 185 CG13040-PB 1..145 1..132 253 46.3 Plus
CG13040-PA 185 CG13040-PA 1..145 1..132 253 46.3 Plus