Clone Sequence Records
BO12633.3prime Sequence
425 bp (424 high quality bases) assembled on 2006-05-08
> BO12633.3prime
ATGGTCTAGAAAGCTTGCGTGCTGCAGGGTGTAGGCCAGAGGAGCGGAGT
GCACCACTGACTTGACGAGGGGAGCGGAGTGAAGCACCGAGTGCACCACA
GGAGCGGAGTGAACGGAGTGGACGACAGGAGCGGCGTGGACAACGGGCAC
GGAGTGAACCACTGGAGCAGCATGGACGGCAACGGCGGGATGGGAGTAGG
TGGTGGTCTTCACGATAGGAGCAACCACTGGCTGCACCACCGCCTTGCTG
TGCACCTGGGTGATGCTCTGGTGGGAAACCGCCGAGGGAGCAGAGTGCAC
CACCGATCCAACCTTGGCCAGAACGGGCTCGTGCACCACATGGTGAGTCT
CGATGAGACCAGCACTGGCGGTGGCGACCAGGAGAGCGATGACGCCGATA
AATTTGAACATGTCGACTGATAACT
BO12633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13060-PA | 396 | CG13060-RA | 1..389 | 411..23 | 1945 | 100 | Minus |
CG13041-PA | 375 | CG13041-RA | 19..296 | 393..116 | 1315 | 98.9 | Minus |
CG13041-PA | 375 | CG13041-RA | 310..368 | 81..23 | 220 | 94.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13060-RA | 539 | CG13060-RA | 71..473 | 411..9 | 1955 | 99 | Minus |
CG13041-RA | 513 | CG13041-RA | 68..439 | 411..19 | 1415 | 91.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319998..16320388 | 399..9 | 1895 | 99 | Minus |
3L | 28110227 | 3L | 16319104..16319381 | 116..393 | 1345 | 98.9 | Plus |
3L | 28110227 | 3L | 16319028..16319090 | 19..81 | 255 | 93.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:32:16 has no hits.
BO12633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:17 Download gff for
BO12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-PA | 1..396 | 15..411 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:02 Download gff for
BO12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-PA | 1..396 | 15..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:13 Download gff for
BO12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 63..473 | 9..421 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:26 Download gff for
BO12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 63..473 | 9..421 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:26 Download gff for
BO12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319998..16320388 | 9..399 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:13 Download gff for
BO12633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16313098..16313488 | 9..399 | 98 | | Minus |
BO12633.5prime Sequence
425 bp (424 high quality bases) assembled on 2006-05-08
> BO12633.5prime
GAAGTTATCAGTCGACATGTTCAAATTTATCGGCGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCTATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCATGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
TGTCGTCCACTCCGTTCACTCCGCTCCTGTGGTGCACTCGGTGCTTCACT
CCGCTCCCCTCGTCAAGTCAGTGGTGCACTCCGCTCCTCTGGCCTACACC
CTGCACCACGCAAGCTTTCTAGACC
BO12633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13060-PA | 396 | CG13060-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
CG13041-PA | 375 | CG13041-RA | 19..296 | 35..312 | 1315 | 98.9 | Plus |
CG13041-PA | 375 | CG13041-RA | 310..372 | 347..409 | 240 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13060-RA | 539 | CG13060-RA | 71..473 | 17..419 | 1970 | 99.3 | Plus |
CG13041-RA | 513 | CG13041-RA | 68..439 | 17..409 | 1430 | 91.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319998..16320388 | 29..419 | 1910 | 99.2 | Plus |
3L | 28110227 | 3L | 16319104..16319381 | 312..35 | 1345 | 98.9 | Minus |
3L | 28110227 | 3L | 16319028..16319090 | 409..347 | 270 | 95.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:53:36 has no hits.
BO12633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:18 Download gff for
BO12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-PA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:03 Download gff for
BO12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-PA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:48 Download gff for
BO12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 63..473 | 7..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:00 Download gff for
BO12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 63..473 | 7..419 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:00 Download gff for
BO12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319998..16320388 | 29..419 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:48 Download gff for
BO12633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16313098..16313488 | 29..419 | 99 | | Plus |
BO12633.complete Sequence
427 bp assembled on 2007-06-22
GenBank Submission: FJ632509
> BO12633.complete
GAAGTTATCAGTCGACATGTTCAAATTTATCGGCGTCATCGCTCTCCTGG
TCGCCACCGCCAGTGCTGGTCTCATCGAGACTCACCATGTGGTGCACGAG
CCCGTTCTGGCCAAGGTTGGATCGGTGGTGCACTCTGCTCCCTCGGCGGT
TTCCCACCAGAGCATCACCCAGGTGCACAGCAAGGCGGTGGTGCAGCCAG
TGGTTGCTCCTATCGTGAAGACCACCACCTACTCCCATCCCGCCGTTGCC
GTCCATGCTGCTCCAGTGGTTCACTCCGTGCCCGTTGTCCACGCCGCTCC
TGTCGTCCACTCCGTTCACTCCGCTCCTGTGGTGCACTCGGTGCTTCACT
CCGCTCCCCTCGTCAAGTCAGTGGTGCACTCCGCTCCTCTGGCCTACACC
CTGCACCACGCAAGCTTTCTAGACCAT
BO12633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13060-RA | 396 | CG13060-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
CG13041-RA | 375 | CG13041-PA | 1..296 | 17..312 | 1375 | 97.6 | Plus |
CG13041-RA | 375 | CG13041-PA | 310..372 | 347..409 | 270 | 95.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13060-RA | 539 | CG13060-RA | 71..473 | 17..419 | 1970 | 99.3 | Plus |
CG13041-RA | 513 | CG13041-RA | 68..363 | 17..312 | 1375 | 97.6 | Plus |
CG13041-RA | 513 | CG13041-RA | 377..439 | 347..409 | 270 | 95.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16319998..16320388 | 29..419 | 1910 | 99.2 | Plus |
3L | 28110227 | 3L | 16319104..16319381 | 312..35 | 1345 | 98.9 | Minus |
3L | 28110227 | 3L | 16319028..16319090 | 409..347 | 270 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:31 has no hits.
BO12633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:17 Download gff for
BO12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:26 Download gff for
BO12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 58..468 | 7..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:18 Download gff for
BO12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 76..463 | 22..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:18 Download gff for
BO12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 58..468 | 7..419 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:37 Download gff for
BO12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13060-RA | 76..463 | 22..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:37 Download gff for
BO12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16319998..16320378 | 29..411 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:18 Download gff for
BO12633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16313098..16313478 | 29..411 | 99 | | Plus |
BO12633.pep Sequence
Translation from 16 to 427
> BO12633.pep
MFKFIGVIALLVATASAGLIETHHVVHEPVLAKVGSVVHSAPSAVSHQSI
TQVHSKAVVQPVVAPIVKTTTYSHPAVAVHAAPVVHSVPVVHAAPVVHSV
HSAPVVHSVLHSAPLVKSVVHSAPLAYTLHHASFLDH
BO12633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13060-PA | 131 | CG13060-PA | 1..131 | 1..131 | 659 | 100 | Plus |
CG13041-PA | 124 | CG13041-PA | 1..124 | 1..131 | 584 | 90.8 | Plus |
CG13044-PA | 155 | CG13044-PA | 1..146 | 1..132 | 263 | 50 | Plus |
CG13040-PB | 185 | CG13040-PB | 1..145 | 1..132 | 253 | 46.3 | Plus |
CG13040-PA | 185 | CG13040-PA | 1..145 | 1..132 | 253 | 46.3 | Plus |