Clone Sequence Records
BO12637.5prime Sequence
344 bp (343 high quality bases) assembled on 2006-05-08
> BO12637.5prime
GAAGTTATCAGTCGACATGCGGCGCGCATCTCGATTGATTCCGTTCGGTT
TCGTCATCCTGCTCCTGATTCTTCTGCTCCTCCAGCCATCGACAGACGGC
CACACACTGGGCGCCAGCTGCCAGACGCCCGAGAAGAGCGAAGGACGCTG
TGTGCACTTCAGCTCCTGCCGGCTCGTCTTGCGTCACTATGCGATGTACA
AGGAGCACATGCCGCCAGCGATAATGCGATTCCTGCAGAGGGTCCGTTGC
AAGCCGAAACGCGAAGGCTATCATTTGTGCTGCGAACTCAAAGATGTGAT
TCCCGCGAACGCCAACTCCAAGTTGAAGGCAAGCTTTCTAGACC
BO12637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31337-PA | 315 | CG31337-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31337-RA | 849 | CG31337-RA | 186..497 | 17..328 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13544546..13544706 | 268..108 | 805 | 100 | Minus |
3R | 32079331 | 3R | 13545125..13545215 | 107..17 | 455 | 100 | Minus |
3R | 32079331 | 3R | 13544318..13544377 | 328..269 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:59:58 has no hits.
BO12637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:27 Download gff for
BO12637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-PA | 1..315 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:14 Download gff for
BO12637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-PA | 1..315 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:08:49 Download gff for
BO12637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 165..484 | 12..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:56:24 Download gff for
BO12637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 181..500 | 12..332 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:56:24 Download gff for
BO12637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13544314..13544377 | 269..332 | 96 | <- | Minus |
3R | 13544546..13544706 | 108..268 | 100 | <- | Minus |
3R | 13545125..13545220 | 12..107 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:08:49 Download gff for
BO12637.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9370847..9370942 | 12..107 | 97 | | Minus |
arm_3R | 9370268..9370428 | 108..268 | 100 | <- | Minus |
arm_3R | 9370036..9370099 | 269..332 | 96 | <- | Minus |
BO12637.3prime Sequence
344 bp (343 high quality bases) assembled on 2006-05-08
> BO12637.3prime
ATGGTCTAGAAAGCTTGCCTTCCACTTGGAGTTGGCGTTCGCGGGAATCA
CATCTTTGAGTTCGCAGCACAAATGATAGCCTTCGCGTTTCGGCTTGCAA
CGGACCCTCTGCAGGAATCGCATTATCGCTGGCGGCATGTGCTCCTTGTA
CATCGCATAGTGACGCAAGACGAGCCGGCAGGAGCTGAAGTGCACACAGC
GTCCTTCGCTCTTCTCGGGCGTCTGGCAGCTGGCGCCCAGTGTGTGGCCG
TCTGTCGATGGCTGGAGGAGCAGAAGAATCAGGAGCAGGATGACGAAACC
GAACGGAATCAATCGAGATGCGCGCCGCATGTCGACTGATAACT
BO12637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31337-PA | 315 | CG31337-RA | 1..307 | 330..24 | 1535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31337-RA | 849 | CG31337-RA | 186..497 | 330..19 | 1545 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13544546..13544706 | 79..239 | 805 | 100 | Plus |
3R | 32079331 | 3R | 13545125..13545215 | 240..330 | 455 | 100 | Plus |
3R | 32079331 | 3R | 13544318..13544377 | 19..78 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:26:39 has no hits.
BO12637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:26 Download gff for
BO12637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-PA | 1..315 | 15..330 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:12 Download gff for
BO12637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-PA | 1..315 | 15..330 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:48 Download gff for
BO12637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 165..484 | 15..335 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:46:04 Download gff for
BO12637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 181..500 | 15..335 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:46:04 Download gff for
BO12637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13544314..13544377 | 15..78 | 95 | <- | Plus |
3R | 13544546..13544706 | 79..239 | 100 | <- | Plus |
3R | 13545125..13545220 | 240..335 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:48 Download gff for
BO12637.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9370036..9370099 | 15..78 | 95 | <- | Plus |
arm_3R | 9370268..9370428 | 79..239 | 100 | <- | Plus |
arm_3R | 9370847..9370942 | 240..335 | 97 | | Plus |
BO12637.complete Sequence
346 bp assembled on 2007-06-22
GenBank Submission: FJ632510
> BO12637.complete
GAAGTTATCAGTCGACATGCGGCGCGCATCTCGATTGATTCCGTTCGGTT
TCGTCATCCTGCTCCTGATTCTTCTGCTCCTCCAGCCATCGACAGACGGC
CACACACTGGGCGCCAGCTGCCAGACGCCCGAGAAGAGCGAAGGACGCTG
TGTGCACTTCAGCTCCTGCCGGCTCGTCTTGCGTCACTATGCGATGTACA
AGGAGCACATGCCGCCAGCGATAATGCGATTCCTGCAGAGGGTCCGTTGC
AAGCCGAAACGCGAAGGCTATCATTTGTGCTGCGAACTCAAAGATGTGAT
TCCCGCGAACGCCAACTCCAAGTTGAAGGCAAGCTTTCTAGACCAT
BO12637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31337-RA | 315 | CG31337-PA | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31337-RA | 849 | CG31337-RA | 186..497 | 17..328 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13544546..13544706 | 268..108 | 805 | 100 | Minus |
3R | 32079331 | 3R | 13545125..13545215 | 107..17 | 455 | 100 | Minus |
3R | 32079331 | 3R | 13544318..13544377 | 328..269 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:43 has no hits.
BO12637.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:19 Download gff for
BO12637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 1..315 | 17..332 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:28 Download gff for
BO12637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 165..484 | 12..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:13 Download gff for
BO12637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 170..481 | 17..330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:19 Download gff for
BO12637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 165..484 | 12..332 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:37 Download gff for
BO12637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31337-RA | 186..497 | 17..330 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:37 Download gff for
BO12637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13545125..13545215 | 17..107 | 100 | | Minus |
3R | 13544316..13544377 | 269..330 | 96 | <- | Minus |
3R | 13544546..13544706 | 108..268 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:13 Download gff for
BO12637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9370847..9370937 | 17..107 | 100 | | Minus |
arm_3R | 9370038..9370099 | 269..330 | 96 | <- | Minus |
arm_3R | 9370268..9370428 | 108..268 | 100 | <- | Minus |
BO12637.pep Sequence
Translation from 16 to 346
> BO12637.pep
MRRASRLIPFGFVILLLILLLLQPSTDGHTLGASCQTPEKSEGRCVHFSS
CRLVLRHYAMYKEHMPPAIMRFLQRVRCKPKREGYHLCCELKDVIPANAN
SKLKASFLDH
BO12637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31337-PA | 104 | CG31337-PA | 1..104 | 1..104 | 554 | 100 | Plus |