Clone BO12638 Report

Search the DGRC for BO12638

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG7071-RA
Protein status:BO12638.pep:
Sequenced Size:940

Clone Sequence Records

BO12638.3prime Sequence

763 bp (734 high quality bases) assembled on 2006-05-08

> BO12638.3prime
ATGGTCTAGAAAGCTTGCGTCACCATGGGGTTTCAATGTCTGGACTTGAC
TTCCCTCGGCGGGCGGGGTGCGCTTAGCCGGCGTCGATGGCTGCGGCTTA
CGTTTGGGCGCGTCCAAGACCTCATCGTACTCGTGCAGCTTCTTGGCCAG
GAAGTACATCTCAGCCAGGGCTATGATGAGCGCTACAATCACGCCCAGCA
AGATGCGAAAGCCGAAAGGCAGCGGGCCCACCATCAAATTGACGCCGAAA
AAGCCGAACGTAAAGCCAGCGGCCACGGAGAAGATGAACTGCACCACGGC
AATGATTTGCTTGTTAAGGCTCTTAATCTGATAGCTGATAGTGTCCTCTG
GATAGTGTTTTAAGCCGGCATCCACATTCTTGGTCATTTTGAGGTAATCC
CGATTTTGTTGCTCTGCGCGAAGACGTTGGCAGCGCGCTTCTAGCTCAGG
ATTGCGCGGCTTCATTTCGTTTTCGGGCAGGAGCAGATCACAGGACTCAA
TTAGCTGATGCAGAAAGACTTGGCAGTGATCCTGACGACGCAGTTCAGCC
AGTGTTTTTGAGAGCCAGTGCAGGTCGGTTAAGTATAGGAAATGTTTAAC
CTCCCTTGTTGACTTTGCGTCATCACTATCCTTGACCCCTGAATCTGGTT
CCGATTTATCCTTAACAGGTTCTTCTGGTTTGTCGGCTAGGTTTTCAGTT
AGTTTTGTCAACAGCTCGTAATTGAGTTTTGGTCGTTTGTACTCCCAGCC
CGCATCCTTGATA

BO12638.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-PA 909 CG7071-RA 162..901 763..24 3650 99.7 Minus
CG7071-PB 909 CG7071-RB 162..901 763..24 3650 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-RC 1766 CG7071-RC 946..1690 763..19 3680 99.6 Minus
CG7071-RB 1551 CG7071-RB 731..1475 763..19 3680 99.6 Minus
CG7071-RA 1489 CG7071-RA 669..1413 763..19 3680 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22363691..22364132 763..322 2165 99.3 Minus
3R 32079331 3R 22364197..22364504 326..19 1525 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 18:46:49 has no hits.

BO12638.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:28 Download gff for BO12638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7071-PB 163..909 18..762 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:15 Download gff for BO12638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7071-PB 163..909 18..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:34 Download gff for BO12638.3prime
Subject Subject Range Query Range Percent Splice Strand
muted-RA 670..1413 19..762 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:45 Download gff for BO12638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7071-RA 670..1413 19..762 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:45 Download gff for BO12638.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22363692..22364127 327..762 99 -> Minus
3R 22364197..22364504 19..326 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:34 Download gff for BO12638.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18189919..18190226 19..326 99   Minus
arm_3R 18189414..18189849 327..762 99 -> Minus

BO12638.5prime Sequence

846 bp (776 high quality bases) assembled on 2006-05-08

> BO12638.5prime
GAAGTTATCAGTCGACATGCTGAAGTCAACGATTGTTGATCCGCGGGTGC
GCCTTGTGCCGTCAAAGAAGCTGCTTGACTTTCTGGACGCCCAAAAGAAG
CACTTAAAGGAGTTGCCCGAAAATGTGGCCAAGATTATGAAGCAAAGAGG
CCACACACTGCCCACCTCTATTAGGATTATCAAGGATGCGGGCTTGGAGT
ACAAACGACCAAAACTCAATTACGAGCTGTTGACAAAACTAACTGAAAAC
CTAGCCGACAAACCAGAAGAACCTGCTAAGGATAAATCGGAACCAGATTC
AGGGGTCAAGGATAGTGATGACGCAAAGTCAACAAGGGAGGTTAAACATT
TCCTATACTTAACCGACCTGCACTGGCTCTCAAAAACACTGGCTGAACTG
CGTCGTCAGGATCACTGCCAAGTCTTTCTGCATCAGCTAATTGAGTCCTG
TGATCTGCTCCTGCCCGAAAACGAAATGAAGCCGCGCAATCCTGAGCTAG
AAGCGCGCTGCCAACGTCTTCGCGCAGAGCAACAAAATCGGGATTACCTC
AAAATGACCAAGAATGTGGATGCCGGCTTAAAACACTATCCAGAGGACAC
TATCAGCTATCAGATTAAGAGCCTTAACAAGCAAATCATTGCCGTGGTGC
AGTTCATCTTCTCCGTGGCCGCTGGCTTTACGTTCGGCTTTTTCGGCGTC
AATTTGATGGTGGGCCCGCTGCCTTTCGGCTTTCGCATCTTGCTGGGCGT
GATTGTAGCGCTCATCATAGCCCTGGCTGAGATGTACTTCCTGGCCAAGA
AGCTGCCACGAGTACGATGAGGTCTTGGACGCGCCCAAACGTAAGC

BO12638.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-PA 909 CG7071-RA 1..790 17..806 3950 100 Plus
CG7071-PB 909 CG7071-RB 1..790 17..806 3950 100 Plus
CG7071-PA 909 CG7071-RA 790..829 807..846 200 100 Plus
CG7071-PB 909 CG7071-RB 790..829 807..846 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-RC 1766 CG7071-RC 785..1613 17..846 4125 99.9 Plus
CG7071-RB 1551 CG7071-RB 570..1398 17..846 4125 99.9 Plus
CG7071-RA 1489 CG7071-RA 508..1336 17..846 4125 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22363530..22364132 17..619 3000 99.8 Plus
3R 32079331 3R 22364197..22364427 615..846 1110 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 11:18:05 has no hits.

BO12638.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:29 Download gff for BO12638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7071-PB 1..829 17..846 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:17 Download gff for BO12638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7071-PB 1..829 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:39 Download gff for BO12638.5prime
Subject Subject Range Query Range Percent Splice Strand
muted-RA 498..1336 10..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:47 Download gff for BO12638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7071-RA 498..1336 10..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:47 Download gff for BO12638.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22363520..22364127 10..614 99 -> Plus
3R 22364197..22364427 615..846 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:39 Download gff for BO12638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18189919..18190149 615..846 99   Plus
arm_3R 18189242..18189849 10..614 99 -> Plus

BO12638.complete Sequence

940 bp assembled on 2008-01-17

GenBank Submission: KX799136

> BO12638.complete
GAAGTTATCAGTCGACATGCTGAAGTCAACGATTGTTGATCCGCGGGTGC
GCCTTGTGCCGTCAAAGAAGCTGCTTGACTTTCTGGACGCCCAAAAGAAG
CACTTAAAGGAGTTGCCCGAAAATGTGGCCAAGATTATGAAGCAAAGAGG
CCACACACTGCCCACCTCTATTAGGATTATCAAGGATGCGGGCTTGGAGT
ACAAACGACCAAAACTCAATTACGAGCTGTTGACAAAACTAACTGAAAAC
CTAGCCGACAAACCAGAAGAACCTGCTAAGGATAAATCGGAACCAGATTC
AGGGGTCAAGGATAGTGATGACGCAAAGTCAACAAGGGAGGTTAAACATT
TCCTATACTTAACCGACCTGCACTGGCTCTCAAAAACACTGGCTGAACTG
CGTCGTCAGGATCACTGCCAAGTCTTTCTGCATCAGCTAATTGAGTCCTG
TGATCTGCTCCTGCCCGAAAACGAAATGAAGCCGCGCAATCCTGAGCTAG
AAGCGCGCTGCCAACGTCTTCGCGCAGAGCAACAAAATCGGGATTACCTC
AAAATGACCAAGAATGTGGATGCCGGCTTAAAACACTATCCAGAGGACAC
TATCAGCTATCAGATTAAGAGCCTTAACAAGCAAATCATTGCCGTGGTGC
AGTTCATCTTCTCCGTGGCCGCTGGCTTTACGTTCGGCTTTTTCGGCGTC
AATTTGATGGTGGGCCCGCTGCCTTTCGGCTTTCGCATCTTGCTGGGCGT
GATTGTAGCGCTCATCATAGCCCTGGCTGAGATGTACTTCCTGGCCAAGA
AGCTGCACGAGTACGATGAGGTCTTGGACGCGCCCAAACGTAAGCCGCAG
CCATCGACGCCGGCTAAGCGCACCCCGCCCGCCGAGGGAAGTCAAGTCCA
GACATTGAAACCCCATGTTGACGCAAGCTTTCTAGACCAT

BO12638.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-RC 909 CG7071-PC 1..906 17..922 4530 100 Plus
CG7071-RB 909 CG7071-PB 1..906 17..922 4530 100 Plus
CG7071-RA 909 CG7071-PA 1..906 17..922 4530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-RC 1766 CG7071-RC 785..1690 17..922 4530 100 Plus
CG7071-RB 1551 CG7071-RB 570..1475 17..922 4530 100 Plus
CG7071-RA 1489 CG7071-RA 508..1413 17..922 4530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22363530..22364132 17..619 3000 99.8 Plus
3R 32079331 3R 22364197..22364504 615..922 1540 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:03:48 has no hits.

BO12638.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:43 Download gff for BO12638.complete
Subject Subject Range Query Range Percent Splice Strand
CG7071-RB 1..909 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:26 Download gff for BO12638.complete
Subject Subject Range Query Range Percent Splice Strand
CG34131-RA 508..1413 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:45 Download gff for BO12638.complete
Subject Subject Range Query Range Percent Splice Strand
muted-RA 508..1413 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:43 Download gff for BO12638.complete
Subject Subject Range Query Range Percent Splice Strand
CG34131-RA 498..1413 10..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:49 Download gff for BO12638.complete
Subject Subject Range Query Range Percent Splice Strand
CG7071-RA 508..1413 17..924 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:49 Download gff for BO12638.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22363530..22364127 17..614 100 -> Plus
3R 22364197..22364504 615..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:45 Download gff for BO12638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18189252..18189849 17..614 100 -> Plus
arm_3R 18189919..18190226 615..924 99   Plus

BO12638.pep Sequence

Translation from 16 to 940

> BO12638.pep
MLKSTIVDPRVRLVPSKKLLDFLDAQKKHLKELPENVAKIMKQRGHTLPT
SIRIIKDAGLEYKRPKLNYELLTKLTENLADKPEEPAKDKSEPDSGVKDS
DDAKSTREVKHFLYLTDLHWLSKTLAELRRQDHCQVFLHQLIESCDLLLP
ENEMKPRNPELEARCQRLRAEQQNRDYLKMTKNVDAGLKHYPEDTISYQI
KSLNKQIIAVVQFIFSVAAGFTFGFFGVNLMVGPLPFGFRILLGVIVALI
IALAEMYFLAKKLHEYDEVLDAPKRKPQPSTPAKRTPPAEGSQVQTLKPH
VDASFLDH

BO12638.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7071-PC 302 CG7071-PC 1..302 1..302 1557 100 Plus
CG7071-PB 302 CG7071-PB 1..302 1..302 1557 100 Plus
CG7071-PA 302 CG7071-PA 1..302 1..302 1557 100 Plus