Clone Sequence Records
BO12638.3prime Sequence
763 bp (734 high quality bases) assembled on 2006-05-08
> BO12638.3prime
ATGGTCTAGAAAGCTTGCGTCACCATGGGGTTTCAATGTCTGGACTTGAC
TTCCCTCGGCGGGCGGGGTGCGCTTAGCCGGCGTCGATGGCTGCGGCTTA
CGTTTGGGCGCGTCCAAGACCTCATCGTACTCGTGCAGCTTCTTGGCCAG
GAAGTACATCTCAGCCAGGGCTATGATGAGCGCTACAATCACGCCCAGCA
AGATGCGAAAGCCGAAAGGCAGCGGGCCCACCATCAAATTGACGCCGAAA
AAGCCGAACGTAAAGCCAGCGGCCACGGAGAAGATGAACTGCACCACGGC
AATGATTTGCTTGTTAAGGCTCTTAATCTGATAGCTGATAGTGTCCTCTG
GATAGTGTTTTAAGCCGGCATCCACATTCTTGGTCATTTTGAGGTAATCC
CGATTTTGTTGCTCTGCGCGAAGACGTTGGCAGCGCGCTTCTAGCTCAGG
ATTGCGCGGCTTCATTTCGTTTTCGGGCAGGAGCAGATCACAGGACTCAA
TTAGCTGATGCAGAAAGACTTGGCAGTGATCCTGACGACGCAGTTCAGCC
AGTGTTTTTGAGAGCCAGTGCAGGTCGGTTAAGTATAGGAAATGTTTAAC
CTCCCTTGTTGACTTTGCGTCATCACTATCCTTGACCCCTGAATCTGGTT
CCGATTTATCCTTAACAGGTTCTTCTGGTTTGTCGGCTAGGTTTTCAGTT
AGTTTTGTCAACAGCTCGTAATTGAGTTTTGGTCGTTTGTACTCCCAGCC
CGCATCCTTGATA
BO12638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7071-PA | 909 | CG7071-RA | 162..901 | 763..24 | 3650 | 99.7 | Minus |
CG7071-PB | 909 | CG7071-RB | 162..901 | 763..24 | 3650 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7071-RC | 1766 | CG7071-RC | 946..1690 | 763..19 | 3680 | 99.6 | Minus |
CG7071-RB | 1551 | CG7071-RB | 731..1475 | 763..19 | 3680 | 99.6 | Minus |
CG7071-RA | 1489 | CG7071-RA | 669..1413 | 763..19 | 3680 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22363691..22364132 | 763..322 | 2165 | 99.3 | Minus |
3R | 32079331 | 3R | 22364197..22364504 | 326..19 | 1525 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:46:49 has no hits.
BO12638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:28 Download gff for
BO12638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7071-PB | 163..909 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:15 Download gff for
BO12638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7071-PB | 163..909 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:34 Download gff for
BO12638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
muted-RA | 670..1413 | 19..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:24:45 Download gff for
BO12638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7071-RA | 670..1413 | 19..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:24:45 Download gff for
BO12638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22363692..22364127 | 327..762 | 99 | -> | Minus |
3R | 22364197..22364504 | 19..326 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:34 Download gff for
BO12638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18189919..18190226 | 19..326 | 99 | | Minus |
arm_3R | 18189414..18189849 | 327..762 | 99 | -> | Minus |
BO12638.5prime Sequence
846 bp (776 high quality bases) assembled on 2006-05-08
> BO12638.5prime
GAAGTTATCAGTCGACATGCTGAAGTCAACGATTGTTGATCCGCGGGTGC
GCCTTGTGCCGTCAAAGAAGCTGCTTGACTTTCTGGACGCCCAAAAGAAG
CACTTAAAGGAGTTGCCCGAAAATGTGGCCAAGATTATGAAGCAAAGAGG
CCACACACTGCCCACCTCTATTAGGATTATCAAGGATGCGGGCTTGGAGT
ACAAACGACCAAAACTCAATTACGAGCTGTTGACAAAACTAACTGAAAAC
CTAGCCGACAAACCAGAAGAACCTGCTAAGGATAAATCGGAACCAGATTC
AGGGGTCAAGGATAGTGATGACGCAAAGTCAACAAGGGAGGTTAAACATT
TCCTATACTTAACCGACCTGCACTGGCTCTCAAAAACACTGGCTGAACTG
CGTCGTCAGGATCACTGCCAAGTCTTTCTGCATCAGCTAATTGAGTCCTG
TGATCTGCTCCTGCCCGAAAACGAAATGAAGCCGCGCAATCCTGAGCTAG
AAGCGCGCTGCCAACGTCTTCGCGCAGAGCAACAAAATCGGGATTACCTC
AAAATGACCAAGAATGTGGATGCCGGCTTAAAACACTATCCAGAGGACAC
TATCAGCTATCAGATTAAGAGCCTTAACAAGCAAATCATTGCCGTGGTGC
AGTTCATCTTCTCCGTGGCCGCTGGCTTTACGTTCGGCTTTTTCGGCGTC
AATTTGATGGTGGGCCCGCTGCCTTTCGGCTTTCGCATCTTGCTGGGCGT
GATTGTAGCGCTCATCATAGCCCTGGCTGAGATGTACTTCCTGGCCAAGA
AGCTGCCACGAGTACGATGAGGTCTTGGACGCGCCCAAACGTAAGC
BO12638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7071-PA | 909 | CG7071-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
CG7071-PB | 909 | CG7071-RB | 1..790 | 17..806 | 3950 | 100 | Plus |
CG7071-PA | 909 | CG7071-RA | 790..829 | 807..846 | 200 | 100 | Plus |
CG7071-PB | 909 | CG7071-RB | 790..829 | 807..846 | 200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:18:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7071-RC | 1766 | CG7071-RC | 785..1613 | 17..846 | 4125 | 99.9 | Plus |
CG7071-RB | 1551 | CG7071-RB | 570..1398 | 17..846 | 4125 | 99.9 | Plus |
CG7071-RA | 1489 | CG7071-RA | 508..1336 | 17..846 | 4125 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:18:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22363530..22364132 | 17..619 | 3000 | 99.8 | Plus |
3R | 32079331 | 3R | 22364197..22364427 | 615..846 | 1110 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:18:05 has no hits.
BO12638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:29 Download gff for
BO12638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7071-PB | 1..829 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:17 Download gff for
BO12638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7071-PB | 1..829 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:39 Download gff for
BO12638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
muted-RA | 498..1336 | 10..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:47 Download gff for
BO12638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7071-RA | 498..1336 | 10..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:47 Download gff for
BO12638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22363520..22364127 | 10..614 | 99 | -> | Plus |
3R | 22364197..22364427 | 615..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:39 Download gff for
BO12638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18189919..18190149 | 615..846 | 99 | | Plus |
arm_3R | 18189242..18189849 | 10..614 | 99 | -> | Plus |
BO12638.complete Sequence
940 bp assembled on 2008-01-17
GenBank Submission: KX799136
> BO12638.complete
GAAGTTATCAGTCGACATGCTGAAGTCAACGATTGTTGATCCGCGGGTGC
GCCTTGTGCCGTCAAAGAAGCTGCTTGACTTTCTGGACGCCCAAAAGAAG
CACTTAAAGGAGTTGCCCGAAAATGTGGCCAAGATTATGAAGCAAAGAGG
CCACACACTGCCCACCTCTATTAGGATTATCAAGGATGCGGGCTTGGAGT
ACAAACGACCAAAACTCAATTACGAGCTGTTGACAAAACTAACTGAAAAC
CTAGCCGACAAACCAGAAGAACCTGCTAAGGATAAATCGGAACCAGATTC
AGGGGTCAAGGATAGTGATGACGCAAAGTCAACAAGGGAGGTTAAACATT
TCCTATACTTAACCGACCTGCACTGGCTCTCAAAAACACTGGCTGAACTG
CGTCGTCAGGATCACTGCCAAGTCTTTCTGCATCAGCTAATTGAGTCCTG
TGATCTGCTCCTGCCCGAAAACGAAATGAAGCCGCGCAATCCTGAGCTAG
AAGCGCGCTGCCAACGTCTTCGCGCAGAGCAACAAAATCGGGATTACCTC
AAAATGACCAAGAATGTGGATGCCGGCTTAAAACACTATCCAGAGGACAC
TATCAGCTATCAGATTAAGAGCCTTAACAAGCAAATCATTGCCGTGGTGC
AGTTCATCTTCTCCGTGGCCGCTGGCTTTACGTTCGGCTTTTTCGGCGTC
AATTTGATGGTGGGCCCGCTGCCTTTCGGCTTTCGCATCTTGCTGGGCGT
GATTGTAGCGCTCATCATAGCCCTGGCTGAGATGTACTTCCTGGCCAAGA
AGCTGCACGAGTACGATGAGGTCTTGGACGCGCCCAAACGTAAGCCGCAG
CCATCGACGCCGGCTAAGCGCACCCCGCCCGCCGAGGGAAGTCAAGTCCA
GACATTGAAACCCCATGTTGACGCAAGCTTTCTAGACCAT
BO12638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7071-RC | 909 | CG7071-PC | 1..906 | 17..922 | 4530 | 100 | Plus |
CG7071-RB | 909 | CG7071-PB | 1..906 | 17..922 | 4530 | 100 | Plus |
CG7071-RA | 909 | CG7071-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7071-RC | 1766 | CG7071-RC | 785..1690 | 17..922 | 4530 | 100 | Plus |
CG7071-RB | 1551 | CG7071-RB | 570..1475 | 17..922 | 4530 | 100 | Plus |
CG7071-RA | 1489 | CG7071-RA | 508..1413 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22363530..22364132 | 17..619 | 3000 | 99.8 | Plus |
3R | 32079331 | 3R | 22364197..22364504 | 615..922 | 1540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:03:48 has no hits.
BO12638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:43 Download gff for
BO12638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7071-RB | 1..909 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:26 Download gff for
BO12638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34131-RA | 508..1413 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:45 Download gff for
BO12638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
muted-RA | 508..1413 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:43 Download gff for
BO12638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34131-RA | 498..1413 | 10..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:49 Download gff for
BO12638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7071-RA | 508..1413 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:49 Download gff for
BO12638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22363530..22364127 | 17..614 | 100 | -> | Plus |
3R | 22364197..22364504 | 615..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:45 Download gff for
BO12638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18189252..18189849 | 17..614 | 100 | -> | Plus |
arm_3R | 18189919..18190226 | 615..924 | 99 | | Plus |
BO12638.pep Sequence
Translation from 16 to 940
> BO12638.pep
MLKSTIVDPRVRLVPSKKLLDFLDAQKKHLKELPENVAKIMKQRGHTLPT
SIRIIKDAGLEYKRPKLNYELLTKLTENLADKPEEPAKDKSEPDSGVKDS
DDAKSTREVKHFLYLTDLHWLSKTLAELRRQDHCQVFLHQLIESCDLLLP
ENEMKPRNPELEARCQRLRAEQQNRDYLKMTKNVDAGLKHYPEDTISYQI
KSLNKQIIAVVQFIFSVAAGFTFGFFGVNLMVGPLPFGFRILLGVIVALI
IALAEMYFLAKKLHEYDEVLDAPKRKPQPSTPAKRTPPAEGSQVQTLKPH
VDASFLDH
BO12638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7071-PC | 302 | CG7071-PC | 1..302 | 1..302 | 1557 | 100 | Plus |
CG7071-PB | 302 | CG7071-PB | 1..302 | 1..302 | 1557 | 100 | Plus |
CG7071-PA | 302 | CG7071-PA | 1..302 | 1..302 | 1557 | 100 | Plus |