Clone BO12645 Report

Search the DGRC for BO12645

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG15043-RA
Protein status:BO12645.pep: validated full length
Sequenced Size:523

Clone Sequence Records

BO12645.3prime Sequence

521 bp (520 high quality bases) assembled on 2006-05-08

> BO12645.3prime
ATGGTCTAGAAAGCTTGCGTTGACTCCGTAGTAGAGAGCCTGGTATGAGA
AGTTCTTGGTGTTCTTGGCCTCCAGCACGATGGAGATCAAGCTCTGGCCG
ATGCCTCCGGCGACCACGTAGGCGGTGCCCTCGTTGGTGTCCTGGGTGCA
GAGCAGCTCCACGTAGGATACAGTGGCACCCTTGCCGTTCTCCGGATAGG
TAAGCTGCAGGCTCACATCTTGCGCCCGTGGGAATTCGTAAGTGTTGGCT
GTCTGGGCCACCAGTTCGTCGCCCGGAATGCGGGCTCCCATGTTGTAGCG
CACGGTCTGGCTTCCGACGCGGGCCTTGGCCGGCACAATTTCCTTCTCCA
TCTGCTGGATCTGCAGACCCGGGTATTGGGCGGCAAAGACATGGATATTA
TCCACCACTTGGATGCCGGTGGTATCCACACGTATTGTTCCAGCCGCTCC
ACCGGACACAAGACAGCCCAGCAGGGCGGACAACAGGATGAGGCTAAACT
TGGACATGTCGACTGATAACT

BO12645.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15043-PA 492 CG15043-RA 1..489 507..19 2445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15043-RB 903 CG15043-RB 87..575 507..19 2445 100 Minus
CG15043-RA 694 CG15043-RA 87..575 507..19 2445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18493521..18493775 19..273 1275 100 Plus
X 23542271 X 18493847..18494082 272..507 1180 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:46:39 has no hits.

BO12645.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:41 Download gff for BO12645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15043-PA 1..492 18..507 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:32 Download gff for BO12645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15043-PA 1..492 18..507 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:30 Download gff for BO12645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 87..575 19..507 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:48 Download gff for BO12645.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 87..575 19..507 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:48 Download gff for BO12645.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18493521..18493774 19..272 100 <- Plus
X 18493848..18494082 273..507 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:30 Download gff for BO12645.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18387554..18387807 19..272 100 <- Plus
arm_X 18387881..18388115 273..507 100   Plus

BO12645.5prime Sequence

521 bp (520 high quality bases) assembled on 2006-05-08

> BO12645.5prime
GAAGTTATCAGTCGACATGTCCAAGTTTAGCCTCATCCTGTTGTCCGCCC
TGCTGGGCTGTCTTGTGTCCGGTGGAGCGGCTGGAACAATACGTGTGGAT
ACCACCGGCATCCAAGTGGTGGATAATATCCATGTCTTTGCCGCCCAATA
CCCGGGTCTGCAGATCCAGCAGATGGAGAAGGAAATTGTGCCGGCCAAGG
CCCGCGTCGGAAGCCAGACCGTGCGCTACAACATGGGAGCCCGCATTCCG
GGCGACGAACTGGTGGCCCAGACAGCCAACACTTACGAATTCCCACGGGC
GCAAGATGTGAGCCTGCAGCTTACCTATCCGGAGAACGGCAAGGGTGCCA
CTGTATCCTACGTGGAGCTGCTCTGCACCCAGGACACCAACGAGGGCACC
GCCTACGTGGTCGCCGGAGGCATCGGCCAGAGCTTGATCTCCATCGTGCT
GGAGGCCAAGAACACCAAGAACTTCTCATACCAGGCTCTCTACTACGGAG
TCAACGCAAGCTTTCTAGACC

BO12645.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15043-PA 492 CG15043-RA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15043-RB 903 CG15043-RB 87..575 17..505 2445 100 Plus
CG15043-RA 694 CG15043-RA 87..575 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18493521..18493775 505..251 1275 100 Minus
X 23542271 X 18493847..18494082 252..17 1180 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:02:28 has no hits.

BO12645.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:42 Download gff for BO12645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15043-PA 1..492 17..506 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:34 Download gff for BO12645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15043-PA 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:20 Download gff for BO12645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 87..575 17..505 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:46 Download gff for BO12645.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 87..575 17..505 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:46 Download gff for BO12645.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18493521..18493774 252..505 100 <- Minus
X 18493848..18494082 17..251 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:20 Download gff for BO12645.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18387554..18387807 252..505 100 <- Minus
arm_X 18387881..18388115 17..251 100   Minus

BO12645.complete Sequence

523 bp assembled on 2006-10-11

GenBank Submission: FJ632511

> BO12645.complete
GAAGTTATCAGTCGACATGTCCAAGTTTAGCCTCATCCTGTTGTCCGCCC
TGCTGGGCTGTCTTGTGTCCGGTGGAGCGGCTGGAACAATACGTGTGGAT
ACCACCGGCATCCAAGTGGTGGATAATATCCATGTCTTTGCCGCCCAATA
CCCGGGTCTGCAGATCCAGCAGATGGAGAAGGAAATTGTGCCGGCCAAGG
CCCGCGTCGGAAGCCAGACCGTGCGCTACAACATGGGAGCCCGCATTCCG
GGCGACGAACTGGTGGCCCAGACAGCCAACACTTACGAATTCCCACGGGC
GCAAGATGTGAGCCTGCAGCTTACCTATCCGGAGAACGGCAAGGGTGCCA
CTGTATCCTACGTGGAGCTGCTCTGCACCCAGGACACCAACGAGGGCACC
GCCTACGTGGTCGCCGGAGGCATCGGCCAGAGCTTGATCTCCATCGTGCT
GGAGGCCAAGAACACCAAGAACTTCTCATACCAGGCTCTCTACTACGGAG
TCAACGCAAGCTTTCTAGACCAT

BO12645.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15043-RB 492 CG15043-PB 1..489 17..505 2445 100 Plus
CG15043-RA 492 CG15043-PA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG15043-RB 903 CG15043-RB 87..575 17..505 2445 100 Plus
CG15043-RA 694 CG15043-RA 87..575 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18493521..18493775 505..251 1275 100 Minus
X 23542271 X 18493847..18494082 252..17 1180 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:26:48 has no hits.

BO12645.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:28 Download gff for BO12645.complete
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:54 Download gff for BO12645.complete
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 83..571 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:21 Download gff for BO12645.complete
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 87..575 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:28 Download gff for BO12645.complete
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 83..571 17..505 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:44 Download gff for BO12645.complete
Subject Subject Range Query Range Percent Splice Strand
CG15043-RA 87..575 17..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:44 Download gff for BO12645.complete
Subject Subject Range Query Range Percent Splice Strand
X 18493519..18493774 252..507 99 <- Minus
X 18493848..18494082 17..251 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:21 Download gff for BO12645.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18387552..18387807 252..507 99 <- Minus
arm_X 18387881..18388115 17..251 100   Minus

BO12645.pep Sequence

Translation from 16 to 523

> BO12645.pep
MSKFSLILLSALLGCLVSGGAAGTIRVDTTGIQVVDNIHVFAAQYPGLQI
QQMEKEIVPAKARVGSQTVRYNMGARIPGDELVAQTANTYEFPRAQDVSL
QLTYPENGKGATVSYVELLCTQDTNEGTAYVVAGGIGQSLISIVLEAKNT
KNFSYQALYYGVNASFLDH

BO12645.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15043-PB 163 CG15043-PB 1..163 1..163 820 100 Plus
CG15043-PA 163 CG15043-PA 1..163 1..163 820 100 Plus
CG15044-PA 160 CG15044-PA 7..159 7..161 153 25.8 Plus