Clone Sequence Records
BO12645.3prime Sequence
521 bp (520 high quality bases) assembled on 2006-05-08
> BO12645.3prime
ATGGTCTAGAAAGCTTGCGTTGACTCCGTAGTAGAGAGCCTGGTATGAGA
AGTTCTTGGTGTTCTTGGCCTCCAGCACGATGGAGATCAAGCTCTGGCCG
ATGCCTCCGGCGACCACGTAGGCGGTGCCCTCGTTGGTGTCCTGGGTGCA
GAGCAGCTCCACGTAGGATACAGTGGCACCCTTGCCGTTCTCCGGATAGG
TAAGCTGCAGGCTCACATCTTGCGCCCGTGGGAATTCGTAAGTGTTGGCT
GTCTGGGCCACCAGTTCGTCGCCCGGAATGCGGGCTCCCATGTTGTAGCG
CACGGTCTGGCTTCCGACGCGGGCCTTGGCCGGCACAATTTCCTTCTCCA
TCTGCTGGATCTGCAGACCCGGGTATTGGGCGGCAAAGACATGGATATTA
TCCACCACTTGGATGCCGGTGGTATCCACACGTATTGTTCCAGCCGCTCC
ACCGGACACAAGACAGCCCAGCAGGGCGGACAACAGGATGAGGCTAAACT
TGGACATGTCGACTGATAACT
BO12645.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15043-PA | 492 | CG15043-RA | 1..489 | 507..19 | 2445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15043-RB | 903 | CG15043-RB | 87..575 | 507..19 | 2445 | 100 | Minus |
CG15043-RA | 694 | CG15043-RA | 87..575 | 507..19 | 2445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18493521..18493775 | 19..273 | 1275 | 100 | Plus |
X | 23542271 | X | 18493847..18494082 | 272..507 | 1180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:46:39 has no hits.
BO12645.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:41 Download gff for
BO12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-PA | 1..492 | 18..507 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:32 Download gff for
BO12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-PA | 1..492 | 18..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:30 Download gff for
BO12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 87..575 | 19..507 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:48 Download gff for
BO12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 87..575 | 19..507 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:48 Download gff for
BO12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18493521..18493774 | 19..272 | 100 | <- | Plus |
X | 18493848..18494082 | 273..507 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:30 Download gff for
BO12645.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18387554..18387807 | 19..272 | 100 | <- | Plus |
arm_X | 18387881..18388115 | 273..507 | 100 | | Plus |
BO12645.5prime Sequence
521 bp (520 high quality bases) assembled on 2006-05-08
> BO12645.5prime
GAAGTTATCAGTCGACATGTCCAAGTTTAGCCTCATCCTGTTGTCCGCCC
TGCTGGGCTGTCTTGTGTCCGGTGGAGCGGCTGGAACAATACGTGTGGAT
ACCACCGGCATCCAAGTGGTGGATAATATCCATGTCTTTGCCGCCCAATA
CCCGGGTCTGCAGATCCAGCAGATGGAGAAGGAAATTGTGCCGGCCAAGG
CCCGCGTCGGAAGCCAGACCGTGCGCTACAACATGGGAGCCCGCATTCCG
GGCGACGAACTGGTGGCCCAGACAGCCAACACTTACGAATTCCCACGGGC
GCAAGATGTGAGCCTGCAGCTTACCTATCCGGAGAACGGCAAGGGTGCCA
CTGTATCCTACGTGGAGCTGCTCTGCACCCAGGACACCAACGAGGGCACC
GCCTACGTGGTCGCCGGAGGCATCGGCCAGAGCTTGATCTCCATCGTGCT
GGAGGCCAAGAACACCAAGAACTTCTCATACCAGGCTCTCTACTACGGAG
TCAACGCAAGCTTTCTAGACC
BO12645.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15043-PA | 492 | CG15043-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15043-RB | 903 | CG15043-RB | 87..575 | 17..505 | 2445 | 100 | Plus |
CG15043-RA | 694 | CG15043-RA | 87..575 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:02:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18493521..18493775 | 505..251 | 1275 | 100 | Minus |
X | 23542271 | X | 18493847..18494082 | 252..17 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:02:28 has no hits.
BO12645.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:42 Download gff for
BO12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-PA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:34 Download gff for
BO12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-PA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:09:20 Download gff for
BO12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 87..575 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:01:46 Download gff for
BO12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 87..575 | 17..505 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:01:46 Download gff for
BO12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18493521..18493774 | 252..505 | 100 | <- | Minus |
X | 18493848..18494082 | 17..251 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:09:20 Download gff for
BO12645.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18387554..18387807 | 252..505 | 100 | <- | Minus |
arm_X | 18387881..18388115 | 17..251 | 100 | | Minus |
BO12645.complete Sequence
523 bp assembled on 2006-10-11
GenBank Submission: FJ632511
> BO12645.complete
GAAGTTATCAGTCGACATGTCCAAGTTTAGCCTCATCCTGTTGTCCGCCC
TGCTGGGCTGTCTTGTGTCCGGTGGAGCGGCTGGAACAATACGTGTGGAT
ACCACCGGCATCCAAGTGGTGGATAATATCCATGTCTTTGCCGCCCAATA
CCCGGGTCTGCAGATCCAGCAGATGGAGAAGGAAATTGTGCCGGCCAAGG
CCCGCGTCGGAAGCCAGACCGTGCGCTACAACATGGGAGCCCGCATTCCG
GGCGACGAACTGGTGGCCCAGACAGCCAACACTTACGAATTCCCACGGGC
GCAAGATGTGAGCCTGCAGCTTACCTATCCGGAGAACGGCAAGGGTGCCA
CTGTATCCTACGTGGAGCTGCTCTGCACCCAGGACACCAACGAGGGCACC
GCCTACGTGGTCGCCGGAGGCATCGGCCAGAGCTTGATCTCCATCGTGCT
GGAGGCCAAGAACACCAAGAACTTCTCATACCAGGCTCTCTACTACGGAG
TCAACGCAAGCTTTCTAGACCAT
BO12645.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15043-RB | 492 | CG15043-PB | 1..489 | 17..505 | 2445 | 100 | Plus |
CG15043-RA | 492 | CG15043-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15043-RB | 903 | CG15043-RB | 87..575 | 17..505 | 2445 | 100 | Plus |
CG15043-RA | 694 | CG15043-RA | 87..575 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18493521..18493775 | 505..251 | 1275 | 100 | Minus |
X | 23542271 | X | 18493847..18494082 | 252..17 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:26:48 has no hits.
BO12645.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:28 Download gff for
BO12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:54 Download gff for
BO12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 83..571 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:21 Download gff for
BO12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 87..575 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:28 Download gff for
BO12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 83..571 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:44 Download gff for
BO12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15043-RA | 87..575 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:44 Download gff for
BO12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18493519..18493774 | 252..507 | 99 | <- | Minus |
X | 18493848..18494082 | 17..251 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:21 Download gff for
BO12645.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18387552..18387807 | 252..507 | 99 | <- | Minus |
arm_X | 18387881..18388115 | 17..251 | 100 | | Minus |
BO12645.pep Sequence
Translation from 16 to 523
> BO12645.pep
MSKFSLILLSALLGCLVSGGAAGTIRVDTTGIQVVDNIHVFAAQYPGLQI
QQMEKEIVPAKARVGSQTVRYNMGARIPGDELVAQTANTYEFPRAQDVSL
QLTYPENGKGATVSYVELLCTQDTNEGTAYVVAGGIGQSLISIVLEAKNT
KNFSYQALYYGVNASFLDH
BO12645.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15043-PB | 163 | CG15043-PB | 1..163 | 1..163 | 820 | 100 | Plus |
CG15043-PA | 163 | CG15043-PA | 1..163 | 1..163 | 820 | 100 | Plus |
CG15044-PA | 160 | CG15044-PA | 7..159 | 7..161 | 153 | 25.8 | Plus |