Clone Sequence Records
BO12646.3prime Sequence
410 bp (409 high quality bases) assembled on 2006-05-08
> BO12646.3prime
ATGGTCTAGAAAGCTTGCTTTCGCAGTCTGATCGGCTTCCTTGCGCTGCT
GCACCAACTCGCGCAGACCGTCTTCCTGGCTCTTAAGGGACTTCTGCAAG
AACTCCTTCTTCTTCTCCAGCAGTTCTATCGCTTTGTCGCATTTCTCCTG
CCTAGCCTTCAGGTCCTCGCGCATATTCTGTACATCGGTAAGCAGGAACA
TGCGACCCACGGACTGGTAAACTCTTGTGTCGTCGGCCAAGCTGCTGGTG
CCCTTTTCTGTCAGCTGGTACTTTTGTTTGCCTGTCTTGACCATGTCGCA
CTTCATGTCGATCATGTGGATCTTCTTGGTCGTCTCCAGCTTATTGATCT
GCATCTCGGTGAAGGCCTTCTTCAATTCGATGTCCATTTGTGCCATGTCG
ACTGATAACT
BO12646.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13993-PA | 381 | CG13993-RA | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13993-RB | 575 | CG13993-RB | 123..500 | 396..19 | 1890 | 100 | Minus |
CG13993-RA | 595 | CG13993-RA | 143..520 | 396..19 | 1890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6069557..6069763 | 225..19 | 1035 | 100 | Minus |
2L | 23513712 | 2L | 6069345..6069489 | 368..224 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:23:33 has no hits.
BO12646.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:43 Download gff for
BO12646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-PA | 1..381 | 18..396 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:35 Download gff for
BO12646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-PA | 1..381 | 18..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:01 Download gff for
BO12646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 132..520 | 19..407 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:47 Download gff for
BO12646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 132..520 | 19..407 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:47 Download gff for
BO12646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6069347..6069489 | 224..366 | 100 | -> | Minus |
2L | 6069559..6069763 | 19..223 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:01 Download gff for
BO12646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6069347..6069489 | 224..366 | 100 | -> | Minus |
arm_2L | 6069559..6069763 | 19..223 | 100 | | Minus |
BO12646.5prime Sequence
410 bp (409 high quality bases) assembled on 2006-05-08
> BO12646.5prime
GAAGTTATCAGTCGACATGGCACAAATGGACATCGAATTGAAGAAGGCCT
TCACCGAGATGCAGATCAATAAGCTGGAGACGACCAAGAAGATCCACATG
ATCGACATGAAGTGCGACATGGTCAAGACAGGCAAACAAAAGTACCAGCT
GACAGAAAAGGGCACCAGCAGCTTGGCCGACGACACAAGAGTTTACCAGT
CCGTGGGTCGCATGTTCCTGCTTACCGATGTACAGAATATGCGCGAGGAC
CTGAAGGCTAGGCAGGAGAAATGCGACAAAGCGATAGAACTGCTGGAGAA
GAAGAAGGAGTTCTTGCAGAAGTCCCTTAAGAGCCAGGAAGACGGTCTGC
GCGAGTTGGTGCAGCAGCGCAAGGAAGCCGATCAGACTGCGAAAGCAAGC
TTTCTAGACC
BO12646.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13993-PA | 381 | CG13993-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13993-RB | 575 | CG13993-RB | 123..500 | 17..394 | 1890 | 100 | Plus |
CG13993-RA | 595 | CG13993-RA | 143..520 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6069557..6069763 | 188..394 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 6069345..6069489 | 45..189 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:23:06 has no hits.
BO12646.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:44 Download gff for
BO12646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-PA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:37 Download gff for
BO12646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-PA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:40 Download gff for
BO12646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 132..520 | 6..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:27 Download gff for
BO12646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 132..520 | 6..394 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:27 Download gff for
BO12646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6069347..6069489 | 47..189 | 100 | -> | Plus |
2L | 6069559..6069763 | 190..394 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:40 Download gff for
BO12646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6069347..6069489 | 47..189 | 100 | -> | Plus |
arm_2L | 6069559..6069763 | 190..394 | 100 | | Plus |
BO12646.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ632512
> BO12646.complete
GAAGTTATCAGTCGACATGGCACAAATGGACATCGAATTGAAGAAGGCCT
TCACCGAGATGCAGATCAATAAGCTGGAGACGACCAAGAAGATCCACATG
ATCGACATGAAGTGCGACATGGTCAAGACAGGCAAACAAAAGTACCAGCT
GACAGAAAAGGGCACCAGCAGCTTGGCCGACGACACAAGAGTTTACCAGT
CCGTGGGTCGCATGTTCCTGCTTACCGATGTACAGAATATGCGCGAGGAC
CTGAAGGCTAGGCAGGAGAAATGCGACAAAGCGATAGAACTGCTGGAGAA
GAAGAAGGAGTTCTTGCAGAAGTCCCTTAAGAGCCAGGAAGACGGTCTGC
GCGAGTTGGTGCAGCAGCGCAAGGAAGCCGATCAGACTGCGAAAGCAAGC
TTTCTAGACCAT
BO12646.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13993-RB | 381 | CG13993-PB | 1..378 | 17..394 | 1890 | 100 | Plus |
CG13993-RA | 381 | CG13993-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13993-RB | 575 | CG13993-RB | 123..500 | 17..394 | 1890 | 100 | Plus |
CG13993-RA | 595 | CG13993-RA | 143..520 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6069557..6069763 | 188..394 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 6069345..6069489 | 45..189 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:52:35 has no hits.
BO12646.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:08 Download gff for
BO12646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:09 Download gff for
BO12646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 108..496 | 6..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:11 Download gff for
BO12646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 143..520 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:08 Download gff for
BO12646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 108..496 | 6..394 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:56 Download gff for
BO12646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13993-RA | 143..520 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:56 Download gff for
BO12646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6069221..6069250 | 17..46 | 100 | -> | Plus |
2L | 6069347..6069489 | 47..189 | 100 | -> | Plus |
2L | 6069559..6069763 | 190..396 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:11 Download gff for
BO12646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6069221..6069250 | 17..46 | 100 | -> | Plus |
arm_2L | 6069347..6069489 | 47..189 | 100 | -> | Plus |
arm_2L | 6069559..6069763 | 190..396 | 99 | | Plus |
BO12646.pep Sequence
Translation from 16 to 412
> BO12646.pep
MAQMDIELKKAFTEMQINKLETTKKIHMIDMKCDMVKTGKQKYQLTEKGT
SSLADDTRVYQSVGRMFLLTDVQNMREDLKARQEKCDKAIELLEKKKEFL
QKSLKSQEDGLRELVQQRKEADQTAKASFLDH
BO12646.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13993-PB | 126 | CG13993-PB | 1..126 | 1..126 | 629 | 100 | Plus |
CG13993-PA | 126 | CG13993-PA | 1..126 | 1..126 | 629 | 100 | Plus |