Clone BO12646 Report

Search the DGRC for BO12646

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG13993-RA
Protein status:BO12646.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO12646.3prime Sequence

410 bp (409 high quality bases) assembled on 2006-05-08

> BO12646.3prime
ATGGTCTAGAAAGCTTGCTTTCGCAGTCTGATCGGCTTCCTTGCGCTGCT
GCACCAACTCGCGCAGACCGTCTTCCTGGCTCTTAAGGGACTTCTGCAAG
AACTCCTTCTTCTTCTCCAGCAGTTCTATCGCTTTGTCGCATTTCTCCTG
CCTAGCCTTCAGGTCCTCGCGCATATTCTGTACATCGGTAAGCAGGAACA
TGCGACCCACGGACTGGTAAACTCTTGTGTCGTCGGCCAAGCTGCTGGTG
CCCTTTTCTGTCAGCTGGTACTTTTGTTTGCCTGTCTTGACCATGTCGCA
CTTCATGTCGATCATGTGGATCTTCTTGGTCGTCTCCAGCTTATTGATCT
GCATCTCGGTGAAGGCCTTCTTCAATTCGATGTCCATTTGTGCCATGTCG
ACTGATAACT

BO12646.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13993-PA 381 CG13993-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13993-RB 575 CG13993-RB 123..500 396..19 1890 100 Minus
CG13993-RA 595 CG13993-RA 143..520 396..19 1890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6069557..6069763 225..19 1035 100 Minus
2L 23513712 2L 6069345..6069489 368..224 725 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:23:33 has no hits.

BO12646.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:43 Download gff for BO12646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13993-PA 1..381 18..396 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:35 Download gff for BO12646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13993-PA 1..381 18..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:01 Download gff for BO12646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 132..520 19..407 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:47 Download gff for BO12646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 132..520 19..407 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:47 Download gff for BO12646.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6069347..6069489 224..366 100 -> Minus
2L 6069559..6069763 19..223 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:01 Download gff for BO12646.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6069347..6069489 224..366 100 -> Minus
arm_2L 6069559..6069763 19..223 100   Minus

BO12646.5prime Sequence

410 bp (409 high quality bases) assembled on 2006-05-08

> BO12646.5prime
GAAGTTATCAGTCGACATGGCACAAATGGACATCGAATTGAAGAAGGCCT
TCACCGAGATGCAGATCAATAAGCTGGAGACGACCAAGAAGATCCACATG
ATCGACATGAAGTGCGACATGGTCAAGACAGGCAAACAAAAGTACCAGCT
GACAGAAAAGGGCACCAGCAGCTTGGCCGACGACACAAGAGTTTACCAGT
CCGTGGGTCGCATGTTCCTGCTTACCGATGTACAGAATATGCGCGAGGAC
CTGAAGGCTAGGCAGGAGAAATGCGACAAAGCGATAGAACTGCTGGAGAA
GAAGAAGGAGTTCTTGCAGAAGTCCCTTAAGAGCCAGGAAGACGGTCTGC
GCGAGTTGGTGCAGCAGCGCAAGGAAGCCGATCAGACTGCGAAAGCAAGC
TTTCTAGACC

BO12646.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13993-PA 381 CG13993-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13993-RB 575 CG13993-RB 123..500 17..394 1890 100 Plus
CG13993-RA 595 CG13993-RA 143..520 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6069557..6069763 188..394 1035 100 Plus
2L 23513712 2L 6069345..6069489 45..189 725 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:23:06 has no hits.

BO12646.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:44 Download gff for BO12646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13993-PA 1..381 17..395 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:37 Download gff for BO12646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13993-PA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:10:40 Download gff for BO12646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 132..520 6..394 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:27 Download gff for BO12646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 132..520 6..394 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:27 Download gff for BO12646.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6069347..6069489 47..189 100 -> Plus
2L 6069559..6069763 190..394 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:10:40 Download gff for BO12646.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6069347..6069489 47..189 100 -> Plus
arm_2L 6069559..6069763 190..394 100   Plus

BO12646.complete Sequence

412 bp assembled on 2006-10-11

GenBank Submission: FJ632512

> BO12646.complete
GAAGTTATCAGTCGACATGGCACAAATGGACATCGAATTGAAGAAGGCCT
TCACCGAGATGCAGATCAATAAGCTGGAGACGACCAAGAAGATCCACATG
ATCGACATGAAGTGCGACATGGTCAAGACAGGCAAACAAAAGTACCAGCT
GACAGAAAAGGGCACCAGCAGCTTGGCCGACGACACAAGAGTTTACCAGT
CCGTGGGTCGCATGTTCCTGCTTACCGATGTACAGAATATGCGCGAGGAC
CTGAAGGCTAGGCAGGAGAAATGCGACAAAGCGATAGAACTGCTGGAGAA
GAAGAAGGAGTTCTTGCAGAAGTCCCTTAAGAGCCAGGAAGACGGTCTGC
GCGAGTTGGTGCAGCAGCGCAAGGAAGCCGATCAGACTGCGAAAGCAAGC
TTTCTAGACCAT

BO12646.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13993-RB 381 CG13993-PB 1..378 17..394 1890 100 Plus
CG13993-RA 381 CG13993-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13993-RB 575 CG13993-RB 123..500 17..394 1890 100 Plus
CG13993-RA 595 CG13993-RA 143..520 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6069557..6069763 188..394 1035 100 Plus
2L 23513712 2L 6069345..6069489 45..189 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:52:35 has no hits.

BO12646.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:08 Download gff for BO12646.complete
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:09 Download gff for BO12646.complete
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 108..496 6..394 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:11 Download gff for BO12646.complete
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 143..520 17..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:08 Download gff for BO12646.complete
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 108..496 6..394 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:56 Download gff for BO12646.complete
Subject Subject Range Query Range Percent Splice Strand
CG13993-RA 143..520 17..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:56 Download gff for BO12646.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6069221..6069250 17..46 100 -> Plus
2L 6069347..6069489 47..189 100 -> Plus
2L 6069559..6069763 190..396 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:11 Download gff for BO12646.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6069221..6069250 17..46 100 -> Plus
arm_2L 6069347..6069489 47..189 100 -> Plus
arm_2L 6069559..6069763 190..396 99   Plus

BO12646.pep Sequence

Translation from 16 to 412

> BO12646.pep
MAQMDIELKKAFTEMQINKLETTKKIHMIDMKCDMVKTGKQKYQLTEKGT
SSLADDTRVYQSVGRMFLLTDVQNMREDLKARQEKCDKAIELLEKKKEFL
QKSLKSQEDGLRELVQQRKEADQTAKASFLDH

BO12646.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13993-PB 126 CG13993-PB 1..126 1..126 629 100 Plus
CG13993-PA 126 CG13993-PA 1..126 1..126 629 100 Plus