Clone BO12650 Report

Search the DGRC for BO12650

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG5292-RA
Protein status:BO12650.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO12650.5prime Sequence

512 bp (511 high quality bases) assembled on 2006-05-08

> BO12650.5prime
GAAGTTATCAGTCGACATGGCCGCCTTCATGGAGGAAGCGTTAGTGGAGG
CGAGGCGGGCACGTGACGCCGGCGAGGTGCCCGTGGGCTGTGTGTTCGTT
CATGGGGACAAGGTGGTCGCACGTGGCGGGAACGAGGTGAACGTCCACCG
GAACGCCACTCGCCACGCGGAATTCATTTGCATCGACGCTATCCTCGCCA
GCTGCCGCGAGAGACGTCTGCCGGCCCGCCAGCTGTTCAGCGAGATCACC
GTGGTGGTCACCGTGGAGCCCTGCATTATGTGCTCCGCCGCCCTGCACAC
TCTGGGCGTCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAG
GAAAGACGGTCGTGGATGTGGCCGCCGTCGTTGGCCATAGGATCGAGATC
ACGGGCGGTGTGCGGGCGGATGAGGCGATGGCTCTGCTAAAGGATTTCTA
CAAGGGCGACAATCCGGCGGCACCGCCACAGGCCAAGAAGAAAAAGGCAA
GCTTTCTAGACC

BO12650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-PA 483 CG5292-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-RB 1855 CG5292-RB 114..593 17..496 2400 100 Plus
CG5292-RA 1191 CG5292-RA 114..593 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17151974..17152453 17..496 2400 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:56:40 has no hits.

BO12650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:52 Download gff for BO12650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-PA 1..483 17..497 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:48 Download gff for BO12650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-PA 1..483 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:54 Download gff for BO12650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 114..593 17..496 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:24 Download gff for BO12650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 114..593 17..496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:24 Download gff for BO12650.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17151974..17152453 17..496 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:54 Download gff for BO12650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12977696..12978175 17..496 100   Plus

BO12650.3prime Sequence

512 bp (511 high quality bases) assembled on 2006-05-08

> BO12650.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTCTGGGCCTGTGGCGGTGCCGCCG
GATTGTCGCCCTTGTAGAAATCCTTTAGCAGAGCCATCGCCTCATCCGCC
CGCACACCGCCCGTGATCTCGATCCTATGGCCAACGACGGCGGCCACATC
CACGACCGTCTTTCCTCCGAAACGATCGTTCTCACAGCCGTAGATGATCT
CCTTGACGCCCAGAGTGTGCAGGGCGGCGGAGCACATAATGCAGGGCTCC
ACGGTGACCACCACGGTGATCTCGCTGAACAGCTGGCGGGCCGGCAGACG
TCTCTCGCGGCAGCTGGCGAGGATAGCGTCGATGCAAATGAATTCCGCGT
GGCGAGTGGCGTTCCGGTGGACGTTCACCTCGTTCCCGCCACGTGCGACC
ACCTTGTCCCCATGAACGAACACACAGCCCACGGGCACCTCGCCGGCGTC
ACGTGCCCGCCTCGCCTCCACTAACGCTTCCTCCATGAAGGCGGCCATGT
CGACTGATAACT

BO12650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-PA 483 CG5292-RA 1..476 498..23 2355 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-RB 1855 CG5292-RB 114..593 498..19 2370 99.6 Minus
CG5292-RA 1191 CG5292-RA 114..593 498..19 2370 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17151974..17152453 498..19 2370 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 22:21:41 has no hits.

BO12650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:51 Download gff for BO12650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-PA 1..483 18..498 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:46 Download gff for BO12650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-PA 1..483 18..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:38 Download gff for BO12650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 114..593 19..498 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:46 Download gff for BO12650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 114..593 19..498 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:46 Download gff for BO12650.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17151974..17152453 19..498 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:38 Download gff for BO12650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12977696..12978175 19..498 99   Minus

BO12650.complete Sequence

514 bp assembled on 2006-10-11

GenBank Submission: FJ632513

> BO12650.complete
GAAGTTATCAGTCGACATGGCCGCCTTCATGGAGGAAGCGTTAGTGGAGG
CGAGGCGGGCACGTGACGCCGGCGAGGTGCCCGTGGGCTGTGTGTTCGTT
CATGGGGACAAGGTGGTCGCACGTGGCGGGAACGAGGTGAACGTCCACCG
GAACGCCACTCGCCACGCGGAATTCATTTGCATCGACGCTATCCTCGCCA
GCTGCCGCGAGAGACGTCTGCCGGCCCGCCAGCTGTTCAGCGAGATCACC
GTGGTGGTCACCGTGGAGCCCTGCATTATGTGCTCCGCCGCCCTGCACAC
TCTGGGCGTCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAG
GAAAGACGGTCGTGGATGTGGCCGCCGTCGTTGGCCATAGGATCGAGATC
ACGGGCGGTGTGCGGGCGGATGAGGCGATGGCTCTGCTAAAGGATTTCTA
CAAGGGCGACAATCCGGCGGCACCGCCACAGGCCAAGAAGAAAAAGGCAA
GCTTTCTAGACCAT

BO12650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-RB 483 CG5292-PB 1..480 17..496 2400 100 Plus
CG5292-RA 483 CG5292-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-RB 1855 CG5292-RB 114..593 17..496 2400 100 Plus
CG5292-RA 1191 CG5292-RA 114..593 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17151974..17152453 17..496 2400 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:02:08 has no hits.

BO12650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:05 Download gff for BO12650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 1..483 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:25 Download gff for BO12650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 109..588 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:01 Download gff for BO12650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 114..581 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:05 Download gff for BO12650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 109..588 17..496 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:46 Download gff for BO12650.complete
Subject Subject Range Query Range Percent Splice Strand
CG5292-RA 114..581 17..484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:46 Download gff for BO12650.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17151974..17152441 17..484 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:01 Download gff for BO12650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12977696..12978163 17..484 100   Plus

BO12650.pep Sequence

Translation from 16 to 514

> BO12650.pep
MAAFMEEALVEARRARDAGEVPVGCVFVHGDKVVARGGNEVNVHRNATRH
AEFICIDAILASCRERRLPARQLFSEITVVVTVEPCIMCSAALHTLGVKE
IIYGCENDRFGGKTVVDVAAVVGHRIEITGGVRADEAMALLKDFYKGDNP
AAPPQAKKKKASFLDH

BO12650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5292-PB 160 CG5292-PB 1..160 1..160 825 100 Plus
CG5292-PA 160 CG5292-PA 1..160 1..160 825 100 Plus