Clone Sequence Records
BO12650.5prime Sequence
512 bp (511 high quality bases) assembled on 2006-05-08
> BO12650.5prime
GAAGTTATCAGTCGACATGGCCGCCTTCATGGAGGAAGCGTTAGTGGAGG
CGAGGCGGGCACGTGACGCCGGCGAGGTGCCCGTGGGCTGTGTGTTCGTT
CATGGGGACAAGGTGGTCGCACGTGGCGGGAACGAGGTGAACGTCCACCG
GAACGCCACTCGCCACGCGGAATTCATTTGCATCGACGCTATCCTCGCCA
GCTGCCGCGAGAGACGTCTGCCGGCCCGCCAGCTGTTCAGCGAGATCACC
GTGGTGGTCACCGTGGAGCCCTGCATTATGTGCTCCGCCGCCCTGCACAC
TCTGGGCGTCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAG
GAAAGACGGTCGTGGATGTGGCCGCCGTCGTTGGCCATAGGATCGAGATC
ACGGGCGGTGTGCGGGCGGATGAGGCGATGGCTCTGCTAAAGGATTTCTA
CAAGGGCGACAATCCGGCGGCACCGCCACAGGCCAAGAAGAAAAAGGCAA
GCTTTCTAGACC
BO12650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5292-PA | 483 | CG5292-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5292-RB | 1855 | CG5292-RB | 114..593 | 17..496 | 2400 | 100 | Plus |
CG5292-RA | 1191 | CG5292-RA | 114..593 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17151974..17152453 | 17..496 | 2400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:56:40 has no hits.
BO12650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:52 Download gff for
BO12650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-PA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:48 Download gff for
BO12650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-PA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:44:54 Download gff for
BO12650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 114..593 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:24 Download gff for
BO12650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 114..593 | 17..496 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:24 Download gff for
BO12650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17151974..17152453 | 17..496 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:44:54 Download gff for
BO12650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12977696..12978175 | 17..496 | 100 | | Plus |
BO12650.3prime Sequence
512 bp (511 high quality bases) assembled on 2006-05-08
> BO12650.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTTCTGGGCCTGTGGCGGTGCCGCCG
GATTGTCGCCCTTGTAGAAATCCTTTAGCAGAGCCATCGCCTCATCCGCC
CGCACACCGCCCGTGATCTCGATCCTATGGCCAACGACGGCGGCCACATC
CACGACCGTCTTTCCTCCGAAACGATCGTTCTCACAGCCGTAGATGATCT
CCTTGACGCCCAGAGTGTGCAGGGCGGCGGAGCACATAATGCAGGGCTCC
ACGGTGACCACCACGGTGATCTCGCTGAACAGCTGGCGGGCCGGCAGACG
TCTCTCGCGGCAGCTGGCGAGGATAGCGTCGATGCAAATGAATTCCGCGT
GGCGAGTGGCGTTCCGGTGGACGTTCACCTCGTTCCCGCCACGTGCGACC
ACCTTGTCCCCATGAACGAACACACAGCCCACGGGCACCTCGCCGGCGTC
ACGTGCCCGCCTCGCCTCCACTAACGCTTCCTCCATGAAGGCGGCCATGT
CGACTGATAACT
BO12650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5292-PA | 483 | CG5292-RA | 1..476 | 498..23 | 2355 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5292-RB | 1855 | CG5292-RB | 114..593 | 498..19 | 2370 | 99.6 | Minus |
CG5292-RA | 1191 | CG5292-RA | 114..593 | 498..19 | 2370 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17151974..17152453 | 498..19 | 2370 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:21:41 has no hits.
BO12650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:51 Download gff for
BO12650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-PA | 1..483 | 18..498 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:46 Download gff for
BO12650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-PA | 1..483 | 18..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:24:38 Download gff for
BO12650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 114..593 | 19..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:46 Download gff for
BO12650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 114..593 | 19..498 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:46 Download gff for
BO12650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17151974..17152453 | 19..498 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:24:38 Download gff for
BO12650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12977696..12978175 | 19..498 | 99 | | Minus |
BO12650.complete Sequence
514 bp assembled on 2006-10-11
GenBank Submission: FJ632513
> BO12650.complete
GAAGTTATCAGTCGACATGGCCGCCTTCATGGAGGAAGCGTTAGTGGAGG
CGAGGCGGGCACGTGACGCCGGCGAGGTGCCCGTGGGCTGTGTGTTCGTT
CATGGGGACAAGGTGGTCGCACGTGGCGGGAACGAGGTGAACGTCCACCG
GAACGCCACTCGCCACGCGGAATTCATTTGCATCGACGCTATCCTCGCCA
GCTGCCGCGAGAGACGTCTGCCGGCCCGCCAGCTGTTCAGCGAGATCACC
GTGGTGGTCACCGTGGAGCCCTGCATTATGTGCTCCGCCGCCCTGCACAC
TCTGGGCGTCAAGGAGATCATCTACGGCTGTGAGAACGATCGTTTCGGAG
GAAAGACGGTCGTGGATGTGGCCGCCGTCGTTGGCCATAGGATCGAGATC
ACGGGCGGTGTGCGGGCGGATGAGGCGATGGCTCTGCTAAAGGATTTCTA
CAAGGGCGACAATCCGGCGGCACCGCCACAGGCCAAGAAGAAAAAGGCAA
GCTTTCTAGACCAT
BO12650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5292-RB | 483 | CG5292-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG5292-RA | 483 | CG5292-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5292-RB | 1855 | CG5292-RB | 114..593 | 17..496 | 2400 | 100 | Plus |
CG5292-RA | 1191 | CG5292-RA | 114..593 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17151974..17152453 | 17..496 | 2400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:02:08 has no hits.
BO12650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:05 Download gff for
BO12650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:25 Download gff for
BO12650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 109..588 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:01 Download gff for
BO12650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 114..581 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:05 Download gff for
BO12650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 109..588 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:46 Download gff for
BO12650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5292-RA | 114..581 | 17..484 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:46 Download gff for
BO12650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17151974..17152441 | 17..484 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:01 Download gff for
BO12650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12977696..12978163 | 17..484 | 100 | | Plus |
BO12650.pep Sequence
Translation from 16 to 514
> BO12650.pep
MAAFMEEALVEARRARDAGEVPVGCVFVHGDKVVARGGNEVNVHRNATRH
AEFICIDAILASCRERRLPARQLFSEITVVVTVEPCIMCSAALHTLGVKE
IIYGCENDRFGGKTVVDVAAVVGHRIEITGGVRADEAMALLKDFYKGDNP
AAPPQAKKKKASFLDH
BO12650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5292-PB | 160 | CG5292-PB | 1..160 | 1..160 | 825 | 100 | Plus |
CG5292-PA | 160 | CG5292-PA | 1..160 | 1..160 | 825 | 100 | Plus |