Clone Sequence Records
BO12651.3prime Sequence
817 bp (742 high quality bases) assembled on 2006-05-08
> BO12651.3prime
ATGGTCTAGAAAGCTTGCGGTCTTGTTGAAATATGATTGGTAGACAATGC
CCAGCGATGAAGTGGCGAATAGGGTGAAGTAGCTCCACCAGGTGGCAAAG
CCCAGGAAACCCTTGTACACCTCCGTGGAGAAAACGTTTTTCAGGCTGCT
AAACGAAGCCTGCAGCGATTGCGCCGACTCAATAATATTAAAGTCACCAT
CTCCTTGGGAAACGGCAACACCAGCTCCTTCCGTTTCGCTAGCCGCACAC
TCGTGCTGCAGGACAACGCTCTCGCGGAAAATACCCGACCAGCTAAAGCC
GCCCAGACTTTTGTACATAAGTGTGAGATAAAGGCATAGGATCAGTGGGG
CAGCAAATTGCAGCGTCACAACACATAGATAGTAGAAAATAGACGAGATC
TTCTGCTTGAACTCTACGTTGGTGATCCGACCGGCCTCCTTGCGCAGATC
CATGATCTTGTCGTGGGCCAGATTCAGGTACGATTGCAGATATATGGGCA
TCAAGGCGAAACGAACCACCACCACAAAGATCACTAGCAGCAGGCGAAGT
GTCTCAAAAACGTGTGGCTTCAGTAGTGGCTGTTGCATTCCTTGGAAGAC
GCGCACCGTCAGGTAATCGCGGCTAATGGGCCGAATCCACAGGATGACCA
GAATAAAGGGCAGCACAAAGCTGAGATTCAGGAGCACTTGCAGCAACCGG
TTGCCGCGACAGTACTTCAACGAATCCCAGTGCATCTTGGCCATCCGCAA
GCCGGGGGAAGGTGAACAATGAGCCGAGCAGGCCGCAACCCATGGCCAAA
AAGAACTTGACCACGAT
BO12651.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7638-PA | 1491 | CG7638-RA | 750..1488 | 757..19 | 3695 | 100 | Minus |
CG7638-PA | 1491 | CG7638-RA | 691..753 | 817..755 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7638-RA | 1891 | CG7638-RA | 838..1635 | 817..19 | 3970 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11111423..11111690 | 401..134 | 1340 | 100 | Minus |
3L | 28110227 | 3L | 11110878..11111119 | 817..575 | 1165 | 99.6 | Minus |
3L | 28110227 | 3L | 11111188..11111362 | 574..400 | 875 | 100 | Minus |
3L | 28110227 | 3L | 11111745..11111861 | 135..19 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:13:06 has no hits.
BO12651.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:53 Download gff for
BO12651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-PA | 691..1491 | 18..817 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:49 Download gff for
BO12651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-PA | 691..1491 | 18..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:24:51 Download gff for
BO12651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 838..1641 | 11..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:21:39 Download gff for
BO12651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 838..1641 | 11..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:21:39 Download gff for
BO12651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11110878..11111119 | 575..817 | 99 | -> | Minus |
3L | 11111188..11111362 | 400..574 | 100 | -> | Minus |
3L | 11111425..11111688 | 136..399 | 100 | -> | Minus |
3L | 11111745..11111867 | 11..135 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:24:51 Download gff for
BO12651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11103978..11104219 | 575..817 | 99 | -> | Minus |
arm_3L | 11104288..11104462 | 400..574 | 100 | -> | Minus |
arm_3L | 11104525..11104788 | 136..399 | 100 | -> | Minus |
arm_3L | 11104845..11104967 | 11..135 | 96 | | Minus |
BO12651.5prime Sequence
878 bp (774 high quality bases) assembled on 2006-05-08
> BO12651.5prime
GAAGTTATCAGTCGACATGGCTGTGCTGGGCGCCCAATTGGTCATCACCT
TGGTGATGGTCAGCGTTATCCAGAAGTTGAGTCCACACTACTCCTTCGCC
AAGTGGATTCTGTGCCGCACCGGACTCTATCGATACCTGCATCCCACGGA
CGATGAGCTGCGGTCCCGCGGCGGTGTGCCCAAGGAGAAGCCACCAAAAG
GTGGTCGAAATAAGCAGGCAAATGGTTCAGGAGGAGCGGCGGGTGCACAA
TTCCACATACCGCGCAGCATTGAGGTGGAGCTGTTGACGTCACCGGTGTT
GGAACGGGATGTTGTCCACCTGCGCTACTTCACCGAATATCAATGGCTGC
TGGACTTCAGTGTCTACACGGGGATCGTCTACGTGGTCTCCGAGCTGTTC
CACTTCTACTACCCGCTGCGCCACGAGGTCAACTTGAGCATGGTGTGGTG
CCTGCTGGTCATCTTCTTTGCCCTGAAGCTGCTGTCCTCGCTTACGGTGC
TCTACTTCCAGAGCGAGGAGTCCATCGGCGAGAGGTCGATGGTGATTGTT
GCCTGTTTGGTTTACCTGCTGGTGGCCATGGTCGTGCTGATCGTTGACGA
GCGCATTCTGGAGACGGGACTGGAGGATGCCTATGCGAGCTTTAATGCCA
GCGCTTCCAAGTTCCTCACCGAGCAGGGCCTGCCATCATCTGGTCCCGCC
TCCAAGATCGTGGTCAAGTTCTTTTTGGCCATGGGTTGCGGCCTGCTCGG
CTCATTGTTCACCTTCCCCGGCTTGCGGATGGCCAAGATGCACTGGGATT
CGTTGAAGTACTGTCGCGGCAACCGGGTGCTGCAAGTGCTCCTGAATCTC
AGCTTTGTGCTGCCCTTTATCTGGTCAT
BO12651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7638-PA | 1491 | CG7638-RA | 1..854 | 17..870 | 4245 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7638-RA | 1891 | CG7638-RA | 148..1010 | 17..878 | 4275 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11110029..11110404 | 19..394 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 11110503..11110800 | 393..690 | 1490 | 100 | Plus |
3L | 28110227 | 3L | 11110862..11111041 | 691..870 | 885 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:10:10 has no hits.
BO12651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:54 Download gff for
BO12651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-PA | 1..863 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:50 Download gff for
BO12651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-PA | 1..863 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:16:33 Download gff for
BO12651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 144..1010 | 10..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:46:58 Download gff for
BO12651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 144..1010 | 10..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:46:58 Download gff for
BO12651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11110022..11110404 | 9..394 | 98 | -> | Plus |
3L | 11110505..11110800 | 395..690 | 100 | -> | Plus |
3L | 11110862..11111050 | 691..878 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:16:33 Download gff for
BO12651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11103122..11103504 | 9..394 | 98 | -> | Plus |
arm_3L | 11103605..11103900 | 395..690 | 100 | -> | Plus |
arm_3L | 11103962..11104150 | 691..878 | 98 | | Plus |
BO12651.complete Sequence
1522 bp assembled on 2008-01-17
GenBank Submission: FJ632514
> BO12651.complete
GAAGTTATCAGTCGACATGGCTGTGCTGGGCGCCCAATTGGTCATCACCT
TGGTGATGGTCAGCGTTATCCAGAAGTTGAGTCCACACTACTCCTTCGCC
AAGTGGATTCTGTGCCGCACCGGACTCTATCGATACCTGCATCCCACGGA
CGATGAGCTGCGGTCCCGCGGCGGTGTGCCCAAGGAGAAGCCACCAAAAG
GTGGTCGAAATAAGCAGGCAAATGGTTCAGGAGGAGCGGCGGGTGCACAA
TTCCACATACCGCGCAGCATTGAGGTGGAGCTGTTGACGTCACCGGTGTT
GGAACGGGATGTTGTCCACCTGCGCTACTTCACCGAATATCAATGGCTGC
TGGACTTCAGTGTCTACACGGGGATCGTCTACGTGGTCTCCGAGCTGTTC
CACTTCTACTACCCGCTGCGCCACGAGGTCAACTTGAGCATGGTGTGGTG
CCTGCTGGTCATCTTCTTTGCCCTGAAGCTGCTGTCCTCGCTTACGGTGC
TCTACTTCCAGAGCGAGGAGTCCATCGGCGAGAGGTCGATGGTGATTGTT
GCCTGTTTGGTTTACCTGCTGGTGGCCATGGTCGTGCTGATCGTTGACGA
GCGCATTCTGGAGACGGGACTGGAGGATGCCTATGCGAGCTTTAATGCCA
GCGCTTCCAAGTTCCTCACCGAGCAGGGCCTGCCATCATCTGGTCCCGCC
TCCAAGATCGTGGTCAAGTTCTTTTTGGCCATGGGTTGCGGCCTGCTCGG
CTCATTGTTCACCTTCCCCGGCTTGCGGATGGCCAAGATGCACTGGGATT
CGTTGAAGTACTGTCGCGGCAACCGGTTGCTGCAAGTGCTCCTGAATCTC
AGCTTTGTGCTGCCCTTTATTCTGGTCATCCTGTGGATTCGGCCCATTAG
CCGCGATTACCTGACGGTGCGCGTCTTCCAAGGAATGCAACAGCCACTAC
TGAAGCCACACGTTTTTGAGACACTTCGCCTGCTGCTAGTGATCTTTGTG
GTGGTGGTTCGTTTCGCCTTGATGCCCATATATCTGCAATCGTACCTGAA
TCTGGCCCACGACAAGATCATGGATCTGCGCAAGGAGGCCGGTCGGATCA
CCAACGTAGAGTTCAAGCAGAAGATCTCGTCTATTTTCTACTATCTATGT
GTTGTGACGCTGCAATTTGCTGCCCCACTGATCCTATGCCTTTATCTCAC
ACTTATGTACAAAAGTCTGGGCGGCTTTAGCTGGTCGGGTATTTTCCGCG
AGAGCGTTGTCCTGCAGCACGAGTGTGCGGCTAGCGAAACGGAAGGAGCT
GGTGTTGCCGTTTCCCAAGGAGATGGTGACTTTAATATTATTGAGTCGGC
GCAATCGCTGCAGGCTTCGTTTAGCAGCCTGAAAAACGTTTTCTCCACGG
AGGTGTACAAGGGTTTCCTGGGCTTTGCCACCTGGTGGAGCTACTTCACC
CTATTCGCCACTTCATCGCTGGGCATTGTCTACCAATCATATTTCAACAA
GACCGCAAGCTTTCTAGACCAT
BO12651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7638-RA | 1491 | CG7638-PA | 1..1488 | 17..1504 | 7440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7638-RA | 1891 | CG7638-RA | 148..1635 | 17..1504 | 7440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11110029..11110404 | 19..394 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 11110503..11110800 | 393..690 | 1490 | 100 | Plus |
3L | 28110227 | 3L | 11111423..11111690 | 1122..1389 | 1340 | 100 | Plus |
3L | 28110227 | 3L | 11110862..11111119 | 691..948 | 1290 | 100 | Plus |
3L | 28110227 | 3L | 11111188..11111362 | 949..1123 | 875 | 100 | Plus |
3L | 28110227 | 3L | 11111745..11111861 | 1388..1504 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:34:55 has no hits.
BO12651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:44 Download gff for
BO12651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 1..1491 | 17..1505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:35:19 Download gff for
BO12651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 176..1663 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:59 Download gff for
BO12651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 148..1635 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:44 Download gff for
BO12651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 142..1639 | 10..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:40 Download gff for
BO12651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7638-RA | 148..1635 | 17..1506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:40 Download gff for
BO12651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11110028..11110404 | 17..394 | 99 | -> | Plus |
3L | 11110505..11110800 | 395..690 | 100 | -> | Plus |
3L | 11110862..11111119 | 691..948 | 100 | -> | Plus |
3L | 11111188..11111362 | 949..1123 | 100 | -> | Plus |
3L | 11111425..11111688 | 1124..1387 | 100 | -> | Plus |
3L | 11111745..11111861 | 1388..1506 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:59 Download gff for
BO12651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11103128..11103504 | 17..394 | 99 | -> | Plus |
arm_3L | 11103605..11103900 | 395..690 | 100 | -> | Plus |
arm_3L | 11103962..11104219 | 691..948 | 100 | -> | Plus |
arm_3L | 11104288..11104462 | 949..1123 | 100 | -> | Plus |
arm_3L | 11104525..11104788 | 1124..1387 | 100 | -> | Plus |
arm_3L | 11104845..11104961 | 1388..1506 | 98 | | Plus |
BO12651.pep Sequence
Translation from 16 to 1522
> BO12651.pep
MAVLGAQLVITLVMVSVIQKLSPHYSFAKWILCRTGLYRYLHPTDDELRS
RGGVPKEKPPKGGRNKQANGSGGAAGAQFHIPRSIEVELLTSPVLERDVV
HLRYFTEYQWLLDFSVYTGIVYVVSELFHFYYPLRHEVNLSMVWCLLVIF
FALKLLSSLTVLYFQSEESIGERSMVIVACLVYLLVAMVVLIVDERILET
GLEDAYASFNASASKFLTEQGLPSSGPASKIVVKFFLAMGCGLLGSLFTF
PGLRMAKMHWDSLKYCRGNRLLQVLLNLSFVLPFILVILWIRPISRDYLT
VRVFQGMQQPLLKPHVFETLRLLLVIFVVVVRFALMPIYLQSYLNLAHDK
IMDLRKEAGRITNVEFKQKISSIFYYLCVVTLQFAAPLILCLYLTLMYKS
LGGFSWSGIFRESVVLQHECAASETEGAGVAVSQGDGDFNIIESAQSLQA
SFSSLKNVFSTEVYKGFLGFATWWSYFTLFATSSLGIVYQSYFNKTASFL
DH
BO12651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7638-PA | 496 | CG7638-PA | 1..496 | 1..496 | 2540 | 100 | Plus |