Clone Sequence Records
BO12653.3prime Sequence
377 bp (376 high quality bases) assembled on 2006-05-08
> BO12653.3prime
ATGGTCTAGAAAGCTTGCCAACTTGGCGTCGGTCTTCAGGAGCGGCGCCA
GCTTCTGGGTGAGCATGATGTTGCCGGCGATCTTCAGCTTGCCCTTCATG
AAGGCAGCCTGGGGGTTCAGCTTGCCCAGGGCGATGTCAACCATGTCCTC
GTCGGCGACCGTCAAGGTGGTGTCCACCTTGATGCCCTGGGCAGGTCCCT
CGTAGGCCTTGGCGTTCTTGCAGTCCAGAGTCCACTCCTTGGCCACCTTG
CCGTCCTTGGTGATTTTGTACAGGAACACACCGTTGACCGCCTTGGCCTT
GGCCTCGTTCTCCTTCAGTCCATCGATGATCTTTTGGAAAACGGCGTCCG
ACTGCAGAGACATGTCGACTGATAACT
BO12653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11151-PA | 348 | CG11151-RA | 1..345 | 363..19 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11151-RB | 1066 | CG11151-RB | 198..543 | 364..19 | 1730 | 100 | Minus |
| CG11151-RA | 705 | CG11151-RA | 148..493 | 364..19 | 1730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13740678..13740889 | 230..19 | 1060 | 100 | Minus |
| X | 23542271 | X | 13739979..13740112 | 364..231 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:42:29 has no hits.
BO12653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:57 Download gff for
BO12653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-PA | 1..348 | 15..363 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:55 Download gff for
BO12653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-PA | 1..348 | 15..363 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:03:07 Download gff for
BO12653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 141..496 | 15..371 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:03:05 Download gff for
BO12653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 141..496 | 15..371 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:03:05 Download gff for
BO12653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13739972..13740112 | 231..371 | 97 | -> | Minus |
| X | 13740678..13740892 | 15..230 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:03:07 Download gff for
BO12653.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13634005..13634145 | 231..371 | 97 | -> | Minus |
| arm_X | 13634711..13634925 | 15..230 | 99 | | Minus |
BO12653.5prime Sequence
377 bp (376 high quality bases) assembled on 2006-05-08
> BO12653.5prime
GAAGTTATCAGTCGACATGTCTCTGCAGTCGGACGCCGTTTTCCAAAAGA
TCATCGATGGACTGAAGGAGAACGAGGCCAAGGCCAAGGCGGTCAACGGT
GTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAC
TCTGGACTGCAAGAACGCCAAGGCCTACGAGGGACCTGCCCAGGGCATCA
AGGTGGACACCACCTTGACGGTCGCCGACGAGGACATGGTTGACATCGCC
CTGGGCAAGCTGAACCCCCAGGCTGCCTTCATGAAGGGCAAGCTGAAGAT
CGCCGGCAACATCATGCTCACCCAGAAGCTGGCGCCGCTCCTGAAGACCG
ACGCCAAGTTGGCAAGCTTTCTAGACC
BO12653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11151-PA | 348 | CG11151-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11151-RB | 1066 | CG11151-RB | 198..543 | 16..361 | 1730 | 100 | Plus |
| CG11151-RA | 705 | CG11151-RA | 148..493 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13740678..13740889 | 150..361 | 1060 | 100 | Plus |
| X | 23542271 | X | 13739979..13740112 | 16..149 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:04:16 has no hits.
BO12653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:41:58 Download gff for
BO12653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-PA | 1..348 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:19:56 Download gff for
BO12653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-PA | 1..348 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:27:44 Download gff for
BO12653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 141..496 | 9..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:32 Download gff for
BO12653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 141..496 | 9..365 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:32 Download gff for
BO12653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13740678..13740892 | 150..365 | 99 | | Plus |
| X | 13739972..13740112 | 9..149 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:27:44 Download gff for
BO12653.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13634005..13634145 | 9..149 | 97 | -> | Plus |
| arm_X | 13634711..13634925 | 150..365 | 99 | | Plus |
BO12653.complete Sequence
379 bp assembled on 2006-10-11
GenBank Submission: FJ632515
> BO12653.complete
GAAGTTATCAGTCGACATGTCTCTGCAGTCGGACGCCGTTTTCCAAAAGA
TCATCGATGGACTGAAGGAGAACGAGGCCAAGGCCAAGGCGGTCAACGGT
GTGTTCCTGTACAAAATCACCAAGGACGGCAAGGTGGCCAAGGAGTGGAC
TCTGGACTGCAAGAACGCCAAGGCCTACGAGGGACCTGCCCAGGGCATCA
AGGTGGACACCACCTTGACGGTCGCCGACGAGGACATGGTTGACATCGCC
CTGGGCAAGCTGAACCCCCAGGCTGCCTTCATGAAGGGCAAGCTGAAGAT
CGCCGGCAACATCATGCTCACCCAGAAGCTGGCGCCGCTCCTGAAGACCG
ACGCCAAGTTGGCAAGCTTTCTAGACCAT
BO12653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11151-RB | 348 | CG11151-PB | 1..345 | 17..361 | 1725 | 100 | Plus |
| CG11151-RA | 348 | CG11151-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11151-RB | 1066 | CG11151-RB | 198..543 | 16..361 | 1730 | 100 | Plus |
| CG11151-RA | 705 | CG11151-RA | 148..493 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13740678..13740889 | 150..361 | 1060 | 100 | Plus |
| X | 23542271 | X | 13739979..13740112 | 16..149 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:41:59 has no hits.
BO12653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:43 Download gff for
BO12653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 1..348 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:24 Download gff for
BO12653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 141..496 | 9..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:20 Download gff for
BO12653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 149..493 | 17..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:43 Download gff for
BO12653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 141..496 | 9..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:53 Download gff for
BO12653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11151-RA | 149..493 | 17..363 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:53 Download gff for
BO12653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13739980..13740112 | 17..149 | 100 | -> | Plus |
| X | 13740678..13740889 | 150..363 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:20 Download gff for
BO12653.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13634013..13634145 | 17..149 | 100 | -> | Plus |
| arm_X | 13634711..13634922 | 150..363 | 99 | | Plus |
BO12653.pep Sequence
Translation from 16 to 379
> BO12653.pep
MSLQSDAVFQKIIDGLKENEAKAKAVNGVFLYKITKDGKVAKEWTLDCKN
AKAYEGPAQGIKVDTTLTVADEDMVDIALGKLNPQAAFMKGKLKIAGNIM
LTQKLAPLLKTDAKLASFLDH
BO12653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11151-PB | 115 | CG11151-PB | 1..115 | 1..115 | 576 | 100 | Plus |
| CG11151-PA | 115 | CG11151-PA | 1..115 | 1..115 | 576 | 100 | Plus |
