Clone Sequence Records
BO12656.3prime Sequence
614 bp (613 high quality bases) assembled on 2006-05-08
> BO12656.3prime
ATGGTCTAGAAAGCTTGCGAAGTCGTTCAATGCTTCGCCTAGTTTAATAA
GTTCTGTCTTAACTTTCTCGTACTGCGACAATTGCTGCTCCATTTGGACA
GTCAATTTCAGGCGCTTGTCATGGACATGTTGGAGTCGCTCGCGATTGGC
ATTGCTCTTGGCCATAGCAATCTCAAGTTCTTTTGCCTGAGAGGCCAGTT
GCTGCTCCATGAATTCCACGCTGAAGTCCAAAAATCGCATGCGCAGCGGC
CGAGTTAGTTTATCGGGTGCTGCAGTGTTCACGTTCCATTTCTTGCCCTC
GTAGGCAGCGAAATGTTCCTTGAGCATTTCCAAAGTTTGCAACTTATTTG
GCACATCGTTGCTGGCGAAAAAGCATCGGTTCATTTCGAGCACAACCTTG
GTCATCAGACTGCGAGTGCGATCTACGATGCTTTCGGTGTCCAGAGCGGA
TTGCTCGTGCTCCTGGTAAATGGCATCCCACGCTTGCAGATCTGCGCAGC
TCAAGTCGGCAAAGATTTGTTTAATGGCTTCCTCGTAGGCCTGTTTCACC
TTTGGTCCCACACCCTCGTGGCGTTTAAATGCGGCTTCCGAATCCTCCAT
GTCGACTGATAACT
BO12656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13434-PA | 585 | CG13434-RA | 1..582 | 600..19 | 2885 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nnf1a-RA | 682 | CG13434-RA | 66..647 | 600..19 | 2895 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20586803..20587018 | 286..501 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 20586257..20586411 | 19..173 | 775 | 100 | Plus |
2R | 25286936 | 2R | 20586615..20586730 | 172..287 | 565 | 99.1 | Plus |
2R | 25286936 | 2R | 20587073..20587173 | 500..600 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:46:28 has no hits.
BO12656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:03 Download gff for
BO12656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13434-PA | 1..585 | 16..600 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:03 Download gff for
BO12656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13434-PA | 1..585 | 16..600 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:27 Download gff for
BO12656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 63..657 | 11..605 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:05 Download gff for
BO12656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 63..657 | 11..605 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:05 Download gff for
BO12656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20586247..20586409 | 11..171 | 98 | <- | Plus |
2R | 20586615..20586729 | 172..286 | 99 | <- | Plus |
2R | 20586804..20587016 | 287..499 | 100 | <- | Plus |
2R | 20587073..20587167 | 500..594 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:27 Download gff for
BO12656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16473752..16473914 | 11..171 | 98 | <- | Plus |
arm_2R | 16474120..16474234 | 172..286 | 99 | <- | Plus |
arm_2R | 16474309..16474521 | 287..499 | 100 | <- | Plus |
arm_2R | 16474578..16474672 | 500..594 | 100 | <- | Plus |
BO12656.5prime Sequence
614 bp (613 high quality bases) assembled on 2006-05-08
> BO12656.5prime
GAAGTTATCAGTCGACATGGAGGATTCGGAAGCCGCATTTAAACGCCACG
AGGGTGTGGGACCAAAGGTGAAACAGGCCTACGAGGAAGCCATTAAACAA
ATCTTTGCCGACTTGAGCTGCGCAGATCTGCAAGCGTGGGATGCCATTTA
CCAGGAGCACGAGCAATCCGCTCTGGACACCGAAAGCATCGTAGATCGCA
CTCGCAGTCTGATGACCAAGGTTGTGCTCGAAATGAACCGATGCTTTTTC
GCCAGCAACGATGTGCCAAATAAGTTGCAAACTTTGGAAATGCTCAAGGA
ACATTTCGCTGCCTACGAGGGCAAGAAATGGAACGTGAACACTGCAGCAC
CCGATAAACTAACTCGGCCGCTGCGCATGCGATTTTTGGACTTCAGCGTG
GAATTCATGGAGCAGCAACTGGCCTCTCAGGCAAAAGAACTTGAGATTGC
TATGGCCAAGAGCAATGCCAATCGCGAGCGACTCCAACATGTCCATGACA
AGCGCCTGAAATTGACTGTCCAAATGGAGCAGCAATTGTCGCAGTACGAG
AAAGTTAAGACAGAACTTATTAAACTAGGCGAAGCATTGAACGACTTCGC
AAGCTTTCTAGACC
BO12656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13434-PA | 585 | CG13434-RA | 1..582 | 17..598 | 2885 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nnf1a-RA | 682 | CG13434-RA | 66..647 | 17..598 | 2895 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20586803..20587018 | 331..116 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 20586257..20586411 | 598..444 | 775 | 100 | Minus |
2R | 25286936 | 2R | 20586615..20586730 | 445..330 | 565 | 99.1 | Minus |
2R | 25286936 | 2R | 20587073..20587173 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:59:49 has no hits.
BO12656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:04 Download gff for
BO12656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13434-PA | 1..585 | 17..601 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:05 Download gff for
BO12656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13434-PA | 1..585 | 17..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:20:06 Download gff for
BO12656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 63..657 | 12..606 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:21:07 Download gff for
BO12656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 63..657 | 12..606 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:07 Download gff for
BO12656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20587073..20587167 | 23..117 | 100 | <- | Minus |
2R | 20586247..20586409 | 446..606 | 98 | <- | Minus |
2R | 20586615..20586729 | 331..445 | 99 | <- | Minus |
2R | 20586804..20587016 | 118..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:20:06 Download gff for
BO12656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16473752..16473914 | 446..606 | 98 | <- | Minus |
arm_2R | 16474120..16474234 | 331..445 | 99 | <- | Minus |
arm_2R | 16474309..16474521 | 118..330 | 100 | <- | Minus |
arm_2R | 16474578..16474672 | 23..117 | 100 | <- | Minus |
BO12656.complete Sequence
616 bp assembled on 2006-10-11
GenBank Submission: FJ632516
> BO12656.complete
GAAGTTATCAGTCGACATGGAGGATTCGGAAGCCGCATTTAAACGCCACG
AGGGTGTGGGACCAAAGGTGAAACAGGCCTACGAGGAAGCCATTAAACAA
ATCTTTGCCGACTTGAGCTGCGCAGATCTGCAAGCGTGGGATGCCATTTA
CCAGGAGCACGAGCAATCCGCTCTGGACACCGAAAGCATCGTAGATCGCA
CTCGCAGTCTGATGACCAAGGTTGTGCTCGAAATGAACCGATGCTTTTTC
GCCAGCAACGATGTGCCAAATAAGTTGCAAACTTTGGAAATGCTCAAGGA
ACATTTCGCTGCCTACGAGGGCAAGAAATGGAACGTGAACACTGCAGCAC
CCGATAAACTAACTCGGCCGCTGCGCATGCGATTTTTGGACTTCAGCGTG
GAATTCATGGAGCAGCAACTGGCCTCTCAGGCAAAAGAACTTGAGATTGC
TATGGCCAAGAGCAATGCCAATCGCGAGCGACTCCAACATGTCCATGACA
AGCGCCTGAAATTGACTGTCCAAATGGAGCAGCAATTGTCGCAGTACGAG
AAAGTTAAGACAGAACTTATTAAACTAGGCGAAGCATTGAACGACTTCGC
AAGCTTTCTAGACCAT
BO12656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nnf1a-RA | 585 | CG13434-PA | 1..582 | 17..598 | 2895 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nnf1a-RA | 682 | CG13434-RA | 66..647 | 17..598 | 2895 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20586803..20587018 | 331..116 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 20586257..20586411 | 598..444 | 775 | 100 | Minus |
2R | 25286936 | 2R | 20586615..20586730 | 445..330 | 565 | 99.1 | Minus |
2R | 25286936 | 2R | 20587073..20587173 | 117..17 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:13:53 has no hits.
BO12656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:09 Download gff for
BO12656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 1..585 | 17..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:11 Download gff for
BO12656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 32..626 | 12..606 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:24 Download gff for
BO12656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 66..647 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:09 Download gff for
BO12656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 32..626 | 12..606 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:16 Download gff for
BO12656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nnf1a-RA | 66..647 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:16 Download gff for
BO12656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20586804..20587016 | 118..330 | 100 | <- | Minus |
2R | 20587073..20587173 | 17..117 | 100 | | Minus |
2R | 20586253..20586409 | 446..600 | 98 | <- | Minus |
2R | 20586615..20586729 | 331..445 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:24 Download gff for
BO12656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16474309..16474521 | 118..330 | 100 | <- | Minus |
arm_2R | 16474578..16474678 | 17..117 | 100 | | Minus |
arm_2R | 16473758..16473914 | 446..600 | 98 | <- | Minus |
arm_2R | 16474120..16474234 | 331..445 | 99 | <- | Minus |
BO12656.pep Sequence
Translation from 16 to 616
> BO12656.pep
MEDSEAAFKRHEGVGPKVKQAYEEAIKQIFADLSCADLQAWDAIYQEHEQ
SALDTESIVDRTRSLMTKVVLEMNRCFFASNDVPNKLQTLEMLKEHFAAY
EGKKWNVNTAAPDKLTRPLRMRFLDFSVEFMEQQLASQAKELEIAMAKSN
ANRERLQHVHDKRLKLTVQMEQQLSQYEKVKTELIKLGEALNDFASFLDH
BO12656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nnf1a-PA | 194 | CG13434-PA | 1..194 | 1..194 | 986 | 100 | Plus |
Nnf1b-PA | 204 | CG31658-PA | 6..197 | 2..193 | 574 | 57.3 | Plus |