Clone BO12656 Report

Search the DGRC for BO12656

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptNnf1a-RA
Protein status:BO12656.pep: validated full length
Sequenced Size:616

Clone Sequence Records

BO12656.3prime Sequence

614 bp (613 high quality bases) assembled on 2006-05-08

> BO12656.3prime
ATGGTCTAGAAAGCTTGCGAAGTCGTTCAATGCTTCGCCTAGTTTAATAA
GTTCTGTCTTAACTTTCTCGTACTGCGACAATTGCTGCTCCATTTGGACA
GTCAATTTCAGGCGCTTGTCATGGACATGTTGGAGTCGCTCGCGATTGGC
ATTGCTCTTGGCCATAGCAATCTCAAGTTCTTTTGCCTGAGAGGCCAGTT
GCTGCTCCATGAATTCCACGCTGAAGTCCAAAAATCGCATGCGCAGCGGC
CGAGTTAGTTTATCGGGTGCTGCAGTGTTCACGTTCCATTTCTTGCCCTC
GTAGGCAGCGAAATGTTCCTTGAGCATTTCCAAAGTTTGCAACTTATTTG
GCACATCGTTGCTGGCGAAAAAGCATCGGTTCATTTCGAGCACAACCTTG
GTCATCAGACTGCGAGTGCGATCTACGATGCTTTCGGTGTCCAGAGCGGA
TTGCTCGTGCTCCTGGTAAATGGCATCCCACGCTTGCAGATCTGCGCAGC
TCAAGTCGGCAAAGATTTGTTTAATGGCTTCCTCGTAGGCCTGTTTCACC
TTTGGTCCCACACCCTCGTGGCGTTTAAATGCGGCTTCCGAATCCTCCAT
GTCGACTGATAACT

BO12656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13434-PA 585 CG13434-RA 1..582 600..19 2885 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Nnf1a-RA 682 CG13434-RA 66..647 600..19 2895 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20586803..20587018 286..501 1080 100 Plus
2R 25286936 2R 20586257..20586411 19..173 775 100 Plus
2R 25286936 2R 20586615..20586730 172..287 565 99.1 Plus
2R 25286936 2R 20587073..20587173 500..600 505 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:46:28 has no hits.

BO12656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:03 Download gff for BO12656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13434-PA 1..585 16..600 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:03 Download gff for BO12656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13434-PA 1..585 16..600 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:46:27 Download gff for BO12656.3prime
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 63..657 11..605 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:23:05 Download gff for BO12656.3prime
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 63..657 11..605 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:23:05 Download gff for BO12656.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20586247..20586409 11..171 98 <- Plus
2R 20586615..20586729 172..286 99 <- Plus
2R 20586804..20587016 287..499 100 <- Plus
2R 20587073..20587167 500..594 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:46:27 Download gff for BO12656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16473752..16473914 11..171 98 <- Plus
arm_2R 16474120..16474234 172..286 99 <- Plus
arm_2R 16474309..16474521 287..499 100 <- Plus
arm_2R 16474578..16474672 500..594 100 <- Plus

BO12656.5prime Sequence

614 bp (613 high quality bases) assembled on 2006-05-08

> BO12656.5prime
GAAGTTATCAGTCGACATGGAGGATTCGGAAGCCGCATTTAAACGCCACG
AGGGTGTGGGACCAAAGGTGAAACAGGCCTACGAGGAAGCCATTAAACAA
ATCTTTGCCGACTTGAGCTGCGCAGATCTGCAAGCGTGGGATGCCATTTA
CCAGGAGCACGAGCAATCCGCTCTGGACACCGAAAGCATCGTAGATCGCA
CTCGCAGTCTGATGACCAAGGTTGTGCTCGAAATGAACCGATGCTTTTTC
GCCAGCAACGATGTGCCAAATAAGTTGCAAACTTTGGAAATGCTCAAGGA
ACATTTCGCTGCCTACGAGGGCAAGAAATGGAACGTGAACACTGCAGCAC
CCGATAAACTAACTCGGCCGCTGCGCATGCGATTTTTGGACTTCAGCGTG
GAATTCATGGAGCAGCAACTGGCCTCTCAGGCAAAAGAACTTGAGATTGC
TATGGCCAAGAGCAATGCCAATCGCGAGCGACTCCAACATGTCCATGACA
AGCGCCTGAAATTGACTGTCCAAATGGAGCAGCAATTGTCGCAGTACGAG
AAAGTTAAGACAGAACTTATTAAACTAGGCGAAGCATTGAACGACTTCGC
AAGCTTTCTAGACC

BO12656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13434-PA 585 CG13434-RA 1..582 17..598 2885 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Nnf1a-RA 682 CG13434-RA 66..647 17..598 2895 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:59:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20586803..20587018 331..116 1080 100 Minus
2R 25286936 2R 20586257..20586411 598..444 775 100 Minus
2R 25286936 2R 20586615..20586730 445..330 565 99.1 Minus
2R 25286936 2R 20587073..20587173 117..17 505 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:59:49 has no hits.

BO12656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:04 Download gff for BO12656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13434-PA 1..585 17..601 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:05 Download gff for BO12656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13434-PA 1..585 17..601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:20:06 Download gff for BO12656.5prime
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 63..657 12..606 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:21:07 Download gff for BO12656.5prime
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 63..657 12..606 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:07 Download gff for BO12656.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20587073..20587167 23..117 100 <- Minus
2R 20586247..20586409 446..606 98 <- Minus
2R 20586615..20586729 331..445 99 <- Minus
2R 20586804..20587016 118..330 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:20:06 Download gff for BO12656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16473752..16473914 446..606 98 <- Minus
arm_2R 16474120..16474234 331..445 99 <- Minus
arm_2R 16474309..16474521 118..330 100 <- Minus
arm_2R 16474578..16474672 23..117 100 <- Minus

BO12656.complete Sequence

616 bp assembled on 2006-10-11

GenBank Submission: FJ632516

> BO12656.complete
GAAGTTATCAGTCGACATGGAGGATTCGGAAGCCGCATTTAAACGCCACG
AGGGTGTGGGACCAAAGGTGAAACAGGCCTACGAGGAAGCCATTAAACAA
ATCTTTGCCGACTTGAGCTGCGCAGATCTGCAAGCGTGGGATGCCATTTA
CCAGGAGCACGAGCAATCCGCTCTGGACACCGAAAGCATCGTAGATCGCA
CTCGCAGTCTGATGACCAAGGTTGTGCTCGAAATGAACCGATGCTTTTTC
GCCAGCAACGATGTGCCAAATAAGTTGCAAACTTTGGAAATGCTCAAGGA
ACATTTCGCTGCCTACGAGGGCAAGAAATGGAACGTGAACACTGCAGCAC
CCGATAAACTAACTCGGCCGCTGCGCATGCGATTTTTGGACTTCAGCGTG
GAATTCATGGAGCAGCAACTGGCCTCTCAGGCAAAAGAACTTGAGATTGC
TATGGCCAAGAGCAATGCCAATCGCGAGCGACTCCAACATGTCCATGACA
AGCGCCTGAAATTGACTGTCCAAATGGAGCAGCAATTGTCGCAGTACGAG
AAAGTTAAGACAGAACTTATTAAACTAGGCGAAGCATTGAACGACTTCGC
AAGCTTTCTAGACCAT

BO12656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
Nnf1a-RA 585 CG13434-PA 1..582 17..598 2895 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Nnf1a-RA 682 CG13434-RA 66..647 17..598 2895 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20586803..20587018 331..116 1080 100 Minus
2R 25286936 2R 20586257..20586411 598..444 775 100 Minus
2R 25286936 2R 20586615..20586730 445..330 565 99.1 Minus
2R 25286936 2R 20587073..20587173 117..17 505 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:13:53 has no hits.

BO12656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:09 Download gff for BO12656.complete
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 1..585 17..601 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:11 Download gff for BO12656.complete
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 32..626 12..606 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:24 Download gff for BO12656.complete
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 66..647 17..600 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:09 Download gff for BO12656.complete
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 32..626 12..606 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:16 Download gff for BO12656.complete
Subject Subject Range Query Range Percent Splice Strand
Nnf1a-RA 66..647 17..600 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:16 Download gff for BO12656.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20586804..20587016 118..330 100 <- Minus
2R 20587073..20587173 17..117 100   Minus
2R 20586253..20586409 446..600 98 <- Minus
2R 20586615..20586729 331..445 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:24 Download gff for BO12656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16474309..16474521 118..330 100 <- Minus
arm_2R 16474578..16474678 17..117 100   Minus
arm_2R 16473758..16473914 446..600 98 <- Minus
arm_2R 16474120..16474234 331..445 99 <- Minus

BO12656.pep Sequence

Translation from 16 to 616

> BO12656.pep
MEDSEAAFKRHEGVGPKVKQAYEEAIKQIFADLSCADLQAWDAIYQEHEQ
SALDTESIVDRTRSLMTKVVLEMNRCFFASNDVPNKLQTLEMLKEHFAAY
EGKKWNVNTAAPDKLTRPLRMRFLDFSVEFMEQQLASQAKELEIAMAKSN
ANRERLQHVHDKRLKLTVQMEQQLSQYEKVKTELIKLGEALNDFASFLDH

BO12656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
Nnf1a-PA 194 CG13434-PA 1..194 1..194 986 100 Plus
Nnf1b-PA 204 CG31658-PA 6..197 2..193 574 57.3 Plus