Clone Sequence Records
BO12659.3prime Sequence
677 bp (676 high quality bases) assembled on 2006-05-08
> BO12659.3prime
ATGGTCTAGAAAGCTTGCGCCCTTGCCGCCCAGCGACAGGATGAGTTTCA
GTAGCTCGGTGCGCTTCGCCTTCACGGTGTCGATGTGCAGCGACGGCAGT
CCGTCGATCACCTCGTATCTGTTTAGGTAATCGGCAATGTGGTCGGTCAT
GCAGATAACATGGATGCCACAGTCGTAGCCGTTCGCCTGCTGTAGGCAGC
GCATGGGCCGGAATTTGGCCATTCGGACGCCAAGCAGGTCCTTGATCTTG
TTCATCAGCTCCAGGGAGTTGCCCGTGTTGTTGTTCCCATACGAATCGAA
GTGATAGAAGGTCTTCTCCGGACGCGAGAAGACCAACAGTGACCAGTGGC
TGCCACCAGCATCGGTGGTTTCGTTGTCGTTCAGCGCGAAGAAGATAAAG
GGCTTGCCAGTGGTGTTGCTCTGGTCGAGAAGCTGCTTCAGCTCCTGGTC
GCCCATGTACTTCATACACTGCGTAATCTCCGGCGCAATGAAGTGCAGAT
CCGCATTGGTCTTGTACTTCATGTGGGCCAGGTATTCGTAGTAGAAGCTC
AGGATCTGGTCGTTCAGCCAGTGCGGGCCGTGGAGCAACTGGACGTCGGA
CATCCGCAGGCAGGAGTCGTGGAAGGTCAGCGAGATGGGGTCTGCCTTGG
AGTTGCTGCCCATGTCGACTGATAACT
BO12659.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8493-PA | 648 | CG8493-RA | 1..645 | 663..19 | 3225 | 100 | Minus |
CG8493-PB | 648 | CG8493-RB | 1..645 | 663..19 | 3225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Den1-RC | 1161 | CG8493-RC | 223..867 | 663..19 | 3225 | 100 | Minus |
Den1-RA | 1257 | CG8493-RA | 319..963 | 663..19 | 3225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12338606..12339250 | 663..19 | 3225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:42:24 has no hits.
BO12659.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:08 Download gff for
BO12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8493-PB | 1..648 | 18..663 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:08 Download gff for
BO12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8493-PB | 1..648 | 18..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:03:05 Download gff for
BO12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Den1-RA | 319..963 | 19..663 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:55 Download gff for
BO12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Den1-RA | 319..963 | 19..663 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:55 Download gff for
BO12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12338606..12339250 | 19..663 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:03:05 Download gff for
BO12659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8226111..8226755 | 19..663 | 100 | | Minus |
BO12659.5prime Sequence
677 bp (676 high quality bases) assembled on 2006-05-08
> BO12659.5prime
GAAGTTATCAGTCGACATGGGCAGCAACTCCAAGGCAGACCCCATCTCGC
TGACCTTCCACGACTCCTGCCTGCGGATGTCCGACGTCCAGTTGCTCCAC
GGCCCGCACTGGCTGAACGACCAGATCCTGAGCTTCTACTACGAATACCT
GGCCCACATGAAGTACAAGACCAATGCGGATCTGCACTTCATTGCGCCGG
AGATTACGCAGTGTATGAAGTACATGGGCGACCAGGAGCTGAAGCAGCTT
CTCGACCAGAGCAACACCACTGGCAAGCCCTTTATCTTCTTCGCGCTGAA
CGACAACGAAACCACCGATGCTGGTGGCAGCCACTGGTCACTGTTGGTCT
TCTCGCGTCCGGAGAAGACCTTCTATCACTTCGATTCGTATGGGAACAAC
AACACGGGCAACTCCCTGGAGCTGATGAACAAGATCAAGGACCTGCTTGG
CGTCCGAATGGCCAAATTCCGGCCCATGCGCTGCCTACAGCAGGCGAACG
GCTACGACTGTGGCATCCATGTTATCTGCATGACCGACCACATTGCCGAT
TACCTAAACAGATACGAGGTGATCGACGGACTGCCGTCGCTGCACATCGA
CACCGTGAAGGCGAAGCGCACCGAGCTACTGAAACTCATCCTGTCGCTGG
GCGGCAAGGGCGCAAGCTTTCTAGACC
BO12659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8493-PA | 648 | CG8493-RA | 1..645 | 17..661 | 3225 | 100 | Plus |
CG8493-PB | 648 | CG8493-RB | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Den1-RC | 1161 | CG8493-RC | 223..867 | 17..661 | 3225 | 100 | Plus |
Den1-RA | 1257 | CG8493-RA | 319..963 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12338606..12339250 | 17..661 | 3225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:02:25 has no hits.
BO12659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:10 Download gff for
BO12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8493-PB | 1..648 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:10 Download gff for
BO12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8493-PB | 1..648 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:07 Download gff for
BO12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Den1-RA | 319..963 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:09 Download gff for
BO12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Den1-RA | 319..963 | 17..661 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:09 Download gff for
BO12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12338606..12339250 | 17..661 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:07 Download gff for
BO12659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8226111..8226755 | 17..661 | 100 | | Plus |
BO12659.complete Sequence
679 bp assembled on 2007-06-22
GenBank Submission: FJ632517
> BO12659.complete
GAAGTTATCAGTCGACATGGGCAGCAACTCCAAGGCAGACCCCATCTCGC
TGACCTTCCACGACTCCTGCCTGCGGATGTCCGACGTCCAGTTGCTCCAC
GGCCCGCACTGGCTGAACGACCAGATCCTGAGCTTCTACTACGAATACCT
GGCCCACATGAAGTACAAGACCAATGCGGATCTGCACTTCATTGCGCCGG
AGATTACGCAGTGTATGAAGTACATGGGCGACCAGGAGCTGAAGCAGCTT
CTCGACCAGAGCAACACCACTGGCAAGCCCTTTATCTTCTTCGCGCTGAA
CGACAACGAAACCACCGATGCTGGTGGCAGCCACTGGTCACTGTTGGTCT
TCTCGCGTCCGGAGAAGACCTTCTATCACTTCGATTCGTATGGGAACAAC
AACACGGGCAACTCCCTGGAGCTGATGAACAAGATCAAGGACCTGCTTGG
CGTCCGAATGGCCAAATTCCGGCCCATGCGCTGCCTACAGCAGGCGAACG
GCTACGACTGTGGCATCCATGTTATCTGCATGACCGACCACATTGCCGAT
TACCTAAACAGATACGAGGTGATCGACGGACTGCCGTCGCTGCACATCGA
CACCGTGAAGGCGAAGCGCACCGAGCTACTGAAACTCATCCTGTCGCTGG
GCGGCAAGGGCGCAAGCTTTCTAGACCAT
BO12659.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Den1-RC | 750 | CG8493-PC | 103..747 | 17..661 | 3225 | 100 | Plus |
Den1-RA | 648 | CG8493-PA | 1..645 | 17..661 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Den1-RC | 1161 | CG8493-RC | 223..867 | 17..661 | 3225 | 100 | Plus |
Den1-RA | 1257 | CG8493-RA | 319..963 | 17..661 | 3225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12338606..12339250 | 17..661 | 3225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:33 has no hits.
BO12659.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:57 Download gff for
BO12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8493-RB | 1..648 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:10 Download gff for
BO12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8493-RB | 141..785 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:12 Download gff for
BO12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Den1-RA | 319..963 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:57 Download gff for
BO12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8493-RB | 141..785 | 17..661 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:40 Download gff for
BO12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Den1-RA | 319..963 | 17..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:40 Download gff for
BO12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12338606..12339250 | 17..663 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:12 Download gff for
BO12659.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8226111..8226755 | 17..663 | 99 | | Plus |
BO12659.pep Sequence
Translation from 16 to 679
> BO12659.pep
MGSNSKADPISLTFHDSCLRMSDVQLLHGPHWLNDQILSFYYEYLAHMKY
KTNADLHFIAPEITQCMKYMGDQELKQLLDQSNTTGKPFIFFALNDNETT
DAGGSHWSLLVFSRPEKTFYHFDSYGNNNTGNSLELMNKIKDLLGVRMAK
FRPMRCLQQANGYDCGIHVICMTDHIADYLNRYEVIDGLPSLHIDTVKAK
RTELLKLILSLGGKGASFLDH
BO12659.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Den1-PA | 215 | CG8493-PA | 1..215 | 1..215 | 1156 | 100 | Plus |
Den1-PC | 249 | CG8493-PC | 35..249 | 1..215 | 1156 | 100 | Plus |
CG1503-PB | 307 | CG1503-PB | 88..299 | 10..213 | 324 | 35.8 | Plus |
CG1503-PA | 307 | CG1503-PA | 88..299 | 10..213 | 324 | 35.8 | Plus |