Clone BO12659 Report

Search the DGRC for BO12659

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptDen1-RA
Protein status:BO12659.pep:
Sequenced Size:679

Clone Sequence Records

BO12659.3prime Sequence

677 bp (676 high quality bases) assembled on 2006-05-08

> BO12659.3prime
ATGGTCTAGAAAGCTTGCGCCCTTGCCGCCCAGCGACAGGATGAGTTTCA
GTAGCTCGGTGCGCTTCGCCTTCACGGTGTCGATGTGCAGCGACGGCAGT
CCGTCGATCACCTCGTATCTGTTTAGGTAATCGGCAATGTGGTCGGTCAT
GCAGATAACATGGATGCCACAGTCGTAGCCGTTCGCCTGCTGTAGGCAGC
GCATGGGCCGGAATTTGGCCATTCGGACGCCAAGCAGGTCCTTGATCTTG
TTCATCAGCTCCAGGGAGTTGCCCGTGTTGTTGTTCCCATACGAATCGAA
GTGATAGAAGGTCTTCTCCGGACGCGAGAAGACCAACAGTGACCAGTGGC
TGCCACCAGCATCGGTGGTTTCGTTGTCGTTCAGCGCGAAGAAGATAAAG
GGCTTGCCAGTGGTGTTGCTCTGGTCGAGAAGCTGCTTCAGCTCCTGGTC
GCCCATGTACTTCATACACTGCGTAATCTCCGGCGCAATGAAGTGCAGAT
CCGCATTGGTCTTGTACTTCATGTGGGCCAGGTATTCGTAGTAGAAGCTC
AGGATCTGGTCGTTCAGCCAGTGCGGGCCGTGGAGCAACTGGACGTCGGA
CATCCGCAGGCAGGAGTCGTGGAAGGTCAGCGAGATGGGGTCTGCCTTGG
AGTTGCTGCCCATGTCGACTGATAACT

BO12659.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8493-PA 648 CG8493-RA 1..645 663..19 3225 100 Minus
CG8493-PB 648 CG8493-RB 1..645 663..19 3225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Den1-RC 1161 CG8493-RC 223..867 663..19 3225 100 Minus
Den1-RA 1257 CG8493-RA 319..963 663..19 3225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12338606..12339250 663..19 3225 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:42:24 has no hits.

BO12659.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:08 Download gff for BO12659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8493-PB 1..648 18..663 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:08 Download gff for BO12659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8493-PB 1..648 18..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:03:05 Download gff for BO12659.3prime
Subject Subject Range Query Range Percent Splice Strand
Den1-RA 319..963 19..663 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:55 Download gff for BO12659.3prime
Subject Subject Range Query Range Percent Splice Strand
Den1-RA 319..963 19..663 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:55 Download gff for BO12659.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12338606..12339250 19..663 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:03:05 Download gff for BO12659.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8226111..8226755 19..663 100   Minus

BO12659.5prime Sequence

677 bp (676 high quality bases) assembled on 2006-05-08

> BO12659.5prime
GAAGTTATCAGTCGACATGGGCAGCAACTCCAAGGCAGACCCCATCTCGC
TGACCTTCCACGACTCCTGCCTGCGGATGTCCGACGTCCAGTTGCTCCAC
GGCCCGCACTGGCTGAACGACCAGATCCTGAGCTTCTACTACGAATACCT
GGCCCACATGAAGTACAAGACCAATGCGGATCTGCACTTCATTGCGCCGG
AGATTACGCAGTGTATGAAGTACATGGGCGACCAGGAGCTGAAGCAGCTT
CTCGACCAGAGCAACACCACTGGCAAGCCCTTTATCTTCTTCGCGCTGAA
CGACAACGAAACCACCGATGCTGGTGGCAGCCACTGGTCACTGTTGGTCT
TCTCGCGTCCGGAGAAGACCTTCTATCACTTCGATTCGTATGGGAACAAC
AACACGGGCAACTCCCTGGAGCTGATGAACAAGATCAAGGACCTGCTTGG
CGTCCGAATGGCCAAATTCCGGCCCATGCGCTGCCTACAGCAGGCGAACG
GCTACGACTGTGGCATCCATGTTATCTGCATGACCGACCACATTGCCGAT
TACCTAAACAGATACGAGGTGATCGACGGACTGCCGTCGCTGCACATCGA
CACCGTGAAGGCGAAGCGCACCGAGCTACTGAAACTCATCCTGTCGCTGG
GCGGCAAGGGCGCAAGCTTTCTAGACC

BO12659.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8493-PA 648 CG8493-RA 1..645 17..661 3225 100 Plus
CG8493-PB 648 CG8493-RB 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
Den1-RC 1161 CG8493-RC 223..867 17..661 3225 100 Plus
Den1-RA 1257 CG8493-RA 319..963 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12338606..12339250 17..661 3225 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:02:25 has no hits.

BO12659.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:10 Download gff for BO12659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8493-PB 1..648 17..662 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:10 Download gff for BO12659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8493-PB 1..648 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:07 Download gff for BO12659.5prime
Subject Subject Range Query Range Percent Splice Strand
Den1-RA 319..963 17..661 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:02:09 Download gff for BO12659.5prime
Subject Subject Range Query Range Percent Splice Strand
Den1-RA 319..963 17..661 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:02:09 Download gff for BO12659.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12338606..12339250 17..661 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:07 Download gff for BO12659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8226111..8226755 17..661 100   Plus

BO12659.complete Sequence

679 bp assembled on 2007-06-22

GenBank Submission: FJ632517

> BO12659.complete
GAAGTTATCAGTCGACATGGGCAGCAACTCCAAGGCAGACCCCATCTCGC
TGACCTTCCACGACTCCTGCCTGCGGATGTCCGACGTCCAGTTGCTCCAC
GGCCCGCACTGGCTGAACGACCAGATCCTGAGCTTCTACTACGAATACCT
GGCCCACATGAAGTACAAGACCAATGCGGATCTGCACTTCATTGCGCCGG
AGATTACGCAGTGTATGAAGTACATGGGCGACCAGGAGCTGAAGCAGCTT
CTCGACCAGAGCAACACCACTGGCAAGCCCTTTATCTTCTTCGCGCTGAA
CGACAACGAAACCACCGATGCTGGTGGCAGCCACTGGTCACTGTTGGTCT
TCTCGCGTCCGGAGAAGACCTTCTATCACTTCGATTCGTATGGGAACAAC
AACACGGGCAACTCCCTGGAGCTGATGAACAAGATCAAGGACCTGCTTGG
CGTCCGAATGGCCAAATTCCGGCCCATGCGCTGCCTACAGCAGGCGAACG
GCTACGACTGTGGCATCCATGTTATCTGCATGACCGACCACATTGCCGAT
TACCTAAACAGATACGAGGTGATCGACGGACTGCCGTCGCTGCACATCGA
CACCGTGAAGGCGAAGCGCACCGAGCTACTGAAACTCATCCTGTCGCTGG
GCGGCAAGGGCGCAAGCTTTCTAGACCAT

BO12659.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Den1-RC 750 CG8493-PC 103..747 17..661 3225 100 Plus
Den1-RA 648 CG8493-PA 1..645 17..661 3225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
Den1-RC 1161 CG8493-RC 223..867 17..661 3225 100 Plus
Den1-RA 1257 CG8493-RA 319..963 17..661 3225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12338606..12339250 17..661 3225 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:52:33 has no hits.

BO12659.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:57 Download gff for BO12659.complete
Subject Subject Range Query Range Percent Splice Strand
CG8493-RB 1..648 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:10 Download gff for BO12659.complete
Subject Subject Range Query Range Percent Splice Strand
CG8493-RB 141..785 17..661 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:12 Download gff for BO12659.complete
Subject Subject Range Query Range Percent Splice Strand
Den1-RA 319..963 17..663 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:57 Download gff for BO12659.complete
Subject Subject Range Query Range Percent Splice Strand
CG8493-RB 141..785 17..661 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:40 Download gff for BO12659.complete
Subject Subject Range Query Range Percent Splice Strand
Den1-RA 319..963 17..663 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:40 Download gff for BO12659.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12338606..12339250 17..663 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:12 Download gff for BO12659.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8226111..8226755 17..663 99   Plus

BO12659.pep Sequence

Translation from 16 to 679

> BO12659.pep
MGSNSKADPISLTFHDSCLRMSDVQLLHGPHWLNDQILSFYYEYLAHMKY
KTNADLHFIAPEITQCMKYMGDQELKQLLDQSNTTGKPFIFFALNDNETT
DAGGSHWSLLVFSRPEKTFYHFDSYGNNNTGNSLELMNKIKDLLGVRMAK
FRPMRCLQQANGYDCGIHVICMTDHIADYLNRYEVIDGLPSLHIDTVKAK
RTELLKLILSLGGKGASFLDH

BO12659.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Den1-PA 215 CG8493-PA 1..215 1..215 1156 100 Plus
Den1-PC 249 CG8493-PC 35..249 1..215 1156 100 Plus
CG1503-PB 307 CG1503-PB 88..299 10..213 324 35.8 Plus
CG1503-PA 307 CG1503-PA 88..299 10..213 324 35.8 Plus