Clone BO12660 Report

Search the DGRC for BO12660

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG8630-RA
Protein status:BO12660.pep:
Sequenced Size:1258

Clone Sequence Records

BO12660.3prime Sequence

812 bp (715 high quality bases) assembled on 2006-05-08

> BO12660.3prime
ATGGTCTAGAAAGCTTGCATCCATCTTGCATTCGGATTCCTTGTTCACCA
CATTGGCTCCCTTGCGATCCTCCTCGCTGATATCCTTGTCGTCCCATCCC
CAAATGGCATGCTCCTCCTTCTCGTGATCCAGGTGGGCCACCAGCTCGCT
GGTCGGAATGGCACTATTGTTGTTGGCATCCAGCAGGGCGGCAATGTGGG
AGCCATCGCCAGTGCGAAGGACTCGCTTGTAGACCATCTCCTGCGAGACG
AACTTCAGGTCATAGGCTTGTCCGATCTTAGCCATCACATCGATAAAGGC
CGTCGTCCAGTTGAAACTGTAGGTGCCCAGCTCGGCTGCCTTGTAATCCC
AGGGGAAGACGTGGTGGTAGTTGTGCCATCCCTCGCCGATGGTCAGGGTG
GATACCAGCTTGTTGTTCATGGCGCTCACATTGACATCGTAGGGCTTCAT
GCCGTAGAAGTGGGCGGCGCTGTTTACCAGCCACGTGAAGTGCAGCGACA
GGCAGAAGCGCAGCATGGAGCAGGTGAAGAAGCAGACGCGCAGCGAGCTG
CCCATCACGTAGTAGGGGAAGATCATGGGCAGGGCGAAGCAGCAGATGGG
CATAACCACAAAGTACATTTTCTTCTGGAACATAACGACGGGATCCTGCT
CAATATCCTCCATGGAGATCTGCTTGCCCTTGCTGGTCACATCGGGGTGC
TTCTTGCACATCAGCCAGCCCATATGAGCGAAGAAGAAGCCTCGTCGGGA
GTTGTGGGGATCGGCGTGTGTGTCGGTGAACTTGTGATGCACGCGGTGGT
CACGGGTCCACT

BO12660.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-PA 1227 CG8630-RA 431..1224 812..19 3945 99.8 Minus
CG9747-PA 1386 CG9747-RA 994..1063 387..318 225 92.8 Minus
CG5887-PA 1152 desat1-RA 883..927 384..340 150 93.3 Minus
CG5887-PC 1152 desat1-RC 883..927 384..340 150 93.3 Minus
CG5887-PE 1152 desat1-RE 883..927 384..340 150 93.3 Minus
CG5887-PB 1152 desat1-RB 883..927 384..340 150 93.3 Minus
CG5887-PD 1152 desat1-RD 883..927 384..340 150 93.3 Minus
CG9743-PA 1263 CG9743-RA 973..1017 384..340 150 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-RA 2173 CG8630-RA 803..1596 812..19 3955 99.9 Minus
CG9747-RB 2318 CG9747-RB 1496..1574 396..318 290 91.1 Minus
CG9747-RA 2138 CG9747-RA 1316..1394 396..318 290 91.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13283293..13283640 619..272 1740 100 Minus
3R 32079331 3R 13283696..13283950 273..19 1260 99.6 Minus
3R 32079331 3R 13282893..13283085 812..620 965 100 Minus
3R 32079331 3R 30186167..30186245 318..396 290 91.1 Plus
3R 32079331 3R 12446133..12446261 801..673 225 78.3 Minus
3R 32079331 3R 30196918..30197004 310..396 225 83.9 Plus
3R 32079331 3R 12446672..12446803 384..253 210 77.3 Minus
3L 28110227 3L 11024334..11024394 384..324 185 86.9 Minus
Blast to na_te.dros performed on 2015-02-02 20:39:55 has no hits.

BO12660.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:11 Download gff for BO12660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8630-PA 431..1227 18..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:11 Download gff for BO12660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8630-PA 431..1227 18..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:45 Download gff for BO12660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 803..1596 19..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:18 Download gff for BO12660.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 803..1596 19..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:18 Download gff for BO12660.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13282893..13283085 620..812 100 -> Minus
3R 13283293..13283639 273..619 100 -> Minus
3R 13283697..13283950 19..272 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:45 Download gff for BO12660.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9108615..9108807 620..812 100 -> Minus
arm_3R 9109015..9109361 273..619 100 -> Minus
arm_3R 9109419..9109672 19..272 99   Minus

BO12660.5prime Sequence

783 bp (780 high quality bases) assembled on 2006-05-08

> BO12660.5prime
GAAGTTATCAGTCGACATGTCGCCCAACATAATAGGCAGTACCTTTATAT
TGGCCGAGACGGCCATTGCCGATGGCAACAACAACAAAATGGCTGCCACA
CCAGCTGCTTCCGCCGCCCCTTCAGCAGCCACGCCCAGCCAGAAGGTGGC
CAAGAAAGCGGAGGCCAAGACGCCCGAGAACAAGCCCTACGAACTGGAGA
TCGTCTGGCGCAACGTGGGACTCTTCGTCATCCTCCACTCGATGGCCCTG
TACGGTCTGTACTTGGTGTTCGCCGAGAGTGCCTATTGGGAACTCTTGCC
AGTCTATGCCACCATGTTCCTCGGCGGTCTGGGCATCACGGCCGGAGTGC
ATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCACTGCGCATC
TTCCTCATGCTGTGCCAGTCACTGGCCTTCCAGAACAGCATCTGGGAGTG
GACCCGTGACCACCGCGTGCATCACAAGTTCACCGACACACACGCCGATC
CCCACAACTCCCGACGAGGCTTCTTCTTCGCTCATATGGGCTGGCTGATG
TGCAAGAAGCACCCCGATGTGACCAGCAAGGGCAAGCAGATCTCCATGGA
GGATATTGAGCAGGATCCCGTCGTTATGTTCCAGAAGAAAATGTACTTTG
TGGTTATGCCCATCTGCTGCTTCGCCCTGCCCATGATCTTCCCCTACTAC
GTGATGGGCAGCTCGCTGCGCGTCTGCTTCTTCACCTGCTCCATGCTGCG
CTTCTGCCTGTCGCTGCACTTCACGTGGCTGGT

BO12660.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-PA 1227 CG8630-RA 1..767 17..783 3835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-RA 2173 CG8630-RA 373..1139 17..783 3835 100 Plus
Desat1-RD 1934 CG5887-RD 573..701 458..586 225 80.2 Plus
Desat1-RB 1978 CG5887-RB 617..745 458..586 225 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13282746..13283085 300..639 1700 100 Plus
3R 32079331 3R 13282402..13282687 17..302 1430 100 Plus
3R 32079331 3R 13283293..13283436 640..783 720 100 Plus
3R 32079331 3R 12446133..12446261 458..586 225 78.3 Plus
Blast to na_te.dros performed on 2015-02-13 02:27:20 has no hits.

BO12660.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:12 Download gff for BO12660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8630-PA 1..767 17..783 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:12 Download gff for BO12660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8630-PA 1..767 17..783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:32 Download gff for BO12660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 373..1139 17..783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:49 Download gff for BO12660.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 373..1139 17..783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:49 Download gff for BO12660.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13282402..13282687 17..302 100 -> Plus
3R 13282749..13283085 303..639 100 -> Plus
3R 13283293..13283436 640..783 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:32 Download gff for BO12660.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9108124..9108409 17..302 100 -> Plus
arm_3R 9108471..9108807 303..639 100 -> Plus
arm_3R 9109015..9109158 640..783 100   Plus

BO12660.complete Sequence

1258 bp assembled on 2008-01-17

GenBank Submission: FJ632518

> BO12660.complete
GAAGTTATCAGTCGACATGTCGCCCAACATAATAGGCAGTACCTTTATAT
TGGCCGAGACGGCCATTGCCGATGGCAACAACAACAAAATGGCTGCCACA
CCAGCTGCTTCCGCCGCCCCTTCAGCAGCCACGCCCAGCCAGAAGGTGGC
CAAGAAAGCGGAGGCCAAGACGCCCGAGAACAAGCCCTACGAACTGGAGA
TCGTCTGGCGCAACGTGGGACTCTTCGTCATCCTCCACTCGATGGCCCTG
TACGGTCTGTACTTGGTGTTCGCCGAGAGTGCCTATTGGGAACTCTTGCC
AGTCTATGCCACCATGTTCCTCGGCGGTCTGGGCATCACGGCCGGAGTGC
ATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCACTGCGCATC
TTCCTCATGCTGTGCCAGTCACTGGCCTTCCAGAACAGCATCTGGGAGTG
GACCCGTGACCACCGCGTGCATCACAAGTTCACCGACACACACGCCGATC
CCCACAACTCCCGACGAGGCTTCTTCTTCGCTCATATGGGCTGGCTGATG
TGCAAGAAGCACCCCGATGTGACCAGCAAGGGCAAGCAGATCTCCATGGA
GGATATTGAGCAGGATCCCGTCGTTATGTTCCAGAAGAAAATGTACTTTG
TGGTTATGCCCATCTGCTGCTTCGCCCTGCCCATGATCTTCCCCTACTAC
GTGATGGGCAGCTCGCTGCGCGTCTGCTTCTTCACCTGCTCCATGCTGCG
CTTCTGCCTGTCGCTGCACTTCACGTGGCTGGTAAACAGCGCCGCCCACT
TCTACGGCATGAAGCCCTACGATGTCAATGTGAGCGCCATGAACAACAAG
CTGGTATCCACCCTGACCATCGGCGAGGGATGGCACAACTACCACCACGT
CTTCCCCTGGGATTACAAGGCAGCCGAGCTGGGCACCTACAGTTTCAACT
GGACGACGGCCTTTATCGATGTGATGGCTAAGATCGGACAAGCCTATGAC
CTGAAGTTCGTCTCGCAGGAGATGGTCTACAAGCGAGTCCTTCGCACTGG
CGATGGCTCCCACATTGCCGCCCTGCTGGATGCCAACAACAATAGTGCCA
TTCCGACCAGCGAGCTGGTGGCCCACCTGGATCACGAGAAGGAGGAGCAT
GCCATTTGGGGATGGGACGACAAGGATATCAGCGAGGAGGATCGCAAGGG
AGCCAATGTGGTGAACAAGGAATCCGAATGCAAGCTGGATGCAAGCTTTC
TAGACCAT

BO12660.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-RA 1227 CG8630-PA 1..1224 17..1240 6120 100 Plus
CG9747-RB 1386 CG9747-PB 985..1063 863..941 290 91.1 Plus
CG9747-RA 1386 CG9747-PA 985..1063 863..941 290 91.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-RA 2173 CG8630-RA 373..1596 17..1240 6120 100 Plus
CG9747-RB 2318 CG9747-RB 1496..1574 863..941 290 91.1 Plus
CG9747-RA 2138 CG9747-RA 1316..1394 863..941 290 91.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13283293..13283640 640..987 1740 100 Plus
3R 32079331 3R 13282746..13283085 300..639 1700 100 Plus
3R 32079331 3R 13282402..13282687 17..302 1430 100 Plus
3R 32079331 3R 13283696..13283950 986..1240 1275 100 Plus
3R 32079331 3R 30186167..30186245 941..863 290 91.1 Minus
3R 32079331 3R 12446133..12446261 458..586 225 78.3 Plus
3R 32079331 3R 30196918..30197004 949..863 225 83.9 Minus
3R 32079331 3R 12446672..12446803 875..1006 210 77.3 Plus
3L 28110227 3L 11024334..11024394 875..935 185 86.9 Plus
Blast to na_te.dros performed on 2014-11-27 14:54:12 has no hits.

BO12660.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:45 Download gff for BO12660.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 1..1227 17..1241 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:23 Download gff for BO12660.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 371..1594 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:45 Download gff for BO12660.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 373..1596 17..1242 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:45 Download gff for BO12660.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 371..1594 17..1240 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:20 Download gff for BO12660.complete
Subject Subject Range Query Range Percent Splice Strand
CG8630-RA 373..1596 17..1242 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:20 Download gff for BO12660.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13283697..13283950 987..1242 99   Plus
3R 13282749..13283085 303..639 100 -> Plus
3R 13283293..13283639 640..986 100 -> Plus
3R 13282402..13282687 17..302 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:45 Download gff for BO12660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9108124..9108409 17..302 100 -> Plus
arm_3R 9108471..9108807 303..639 100 -> Plus
arm_3R 9109015..9109361 640..986 100 -> Plus
arm_3R 9109419..9109672 987..1242 99   Plus

BO12660.pep Sequence

Translation from 16 to 1258

> BO12660.pep
MSPNIIGSTFILAETAIADGNNNKMAATPAASAAPSAATPSQKVAKKAEA
KTPENKPYELEIVWRNVGLFVILHSMALYGLYLVFAESAYWELLPVYATM
FLGGLGITAGVHRLWSHKAYKAKLPLRIFLMLCQSLAFQNSIWEWTRDHR
VHHKFTDTHADPHNSRRGFFFAHMGWLMCKKHPDVTSKGKQISMEDIEQD
PVVMFQKKMYFVVMPICCFALPMIFPYYVMGSSLRVCFFTCSMLRFCLSL
HFTWLVNSAAHFYGMKPYDVNVSAMNNKLVSTLTIGEGWHNYHHVFPWDY
KAAELGTYSFNWTTAFIDVMAKIGQAYDLKFVSQEMVYKRVLRTGDGSHI
AALLDANNNSAIPTSELVAHLDHEKEEHAIWGWDDKDISEEDRKGANVVN
KESECKLDASFLDH

BO12660.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8630-PA 408 CG8630-PA 1..408 1..408 2201 100 Plus
Desat1-PD 383 CG5887-PD 59..383 44..404 963 48.5 Plus
Desat1-PB 383 CG5887-PB 59..383 44..404 963 48.5 Plus
Desat1-PE 383 CG5887-PE 59..383 44..404 963 48.5 Plus
Desat1-PC 383 CG5887-PC 59..383 44..404 963 48.5 Plus