Clone Sequence Records
BO12660.3prime Sequence
812 bp (715 high quality bases) assembled on 2006-05-08
> BO12660.3prime
ATGGTCTAGAAAGCTTGCATCCATCTTGCATTCGGATTCCTTGTTCACCA
CATTGGCTCCCTTGCGATCCTCCTCGCTGATATCCTTGTCGTCCCATCCC
CAAATGGCATGCTCCTCCTTCTCGTGATCCAGGTGGGCCACCAGCTCGCT
GGTCGGAATGGCACTATTGTTGTTGGCATCCAGCAGGGCGGCAATGTGGG
AGCCATCGCCAGTGCGAAGGACTCGCTTGTAGACCATCTCCTGCGAGACG
AACTTCAGGTCATAGGCTTGTCCGATCTTAGCCATCACATCGATAAAGGC
CGTCGTCCAGTTGAAACTGTAGGTGCCCAGCTCGGCTGCCTTGTAATCCC
AGGGGAAGACGTGGTGGTAGTTGTGCCATCCCTCGCCGATGGTCAGGGTG
GATACCAGCTTGTTGTTCATGGCGCTCACATTGACATCGTAGGGCTTCAT
GCCGTAGAAGTGGGCGGCGCTGTTTACCAGCCACGTGAAGTGCAGCGACA
GGCAGAAGCGCAGCATGGAGCAGGTGAAGAAGCAGACGCGCAGCGAGCTG
CCCATCACGTAGTAGGGGAAGATCATGGGCAGGGCGAAGCAGCAGATGGG
CATAACCACAAAGTACATTTTCTTCTGGAACATAACGACGGGATCCTGCT
CAATATCCTCCATGGAGATCTGCTTGCCCTTGCTGGTCACATCGGGGTGC
TTCTTGCACATCAGCCAGCCCATATGAGCGAAGAAGAAGCCTCGTCGGGA
GTTGTGGGGATCGGCGTGTGTGTCGGTGAACTTGTGATGCACGCGGTGGT
CACGGGTCCACT
BO12660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8630-PA | 1227 | CG8630-RA | 431..1224 | 812..19 | 3945 | 99.8 | Minus |
CG9747-PA | 1386 | CG9747-RA | 994..1063 | 387..318 | 225 | 92.8 | Minus |
CG5887-PA | 1152 | desat1-RA | 883..927 | 384..340 | 150 | 93.3 | Minus |
CG5887-PC | 1152 | desat1-RC | 883..927 | 384..340 | 150 | 93.3 | Minus |
CG5887-PE | 1152 | desat1-RE | 883..927 | 384..340 | 150 | 93.3 | Minus |
CG5887-PB | 1152 | desat1-RB | 883..927 | 384..340 | 150 | 93.3 | Minus |
CG5887-PD | 1152 | desat1-RD | 883..927 | 384..340 | 150 | 93.3 | Minus |
CG9743-PA | 1263 | CG9743-RA | 973..1017 | 384..340 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8630-RA | 2173 | CG8630-RA | 803..1596 | 812..19 | 3955 | 99.9 | Minus |
CG9747-RB | 2318 | CG9747-RB | 1496..1574 | 396..318 | 290 | 91.1 | Minus |
CG9747-RA | 2138 | CG9747-RA | 1316..1394 | 396..318 | 290 | 91.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13283293..13283640 | 619..272 | 1740 | 100 | Minus |
3R | 32079331 | 3R | 13283696..13283950 | 273..19 | 1260 | 99.6 | Minus |
3R | 32079331 | 3R | 13282893..13283085 | 812..620 | 965 | 100 | Minus |
3R | 32079331 | 3R | 30186167..30186245 | 318..396 | 290 | 91.1 | Plus |
3R | 32079331 | 3R | 12446133..12446261 | 801..673 | 225 | 78.3 | Minus |
3R | 32079331 | 3R | 30196918..30197004 | 310..396 | 225 | 83.9 | Plus |
3R | 32079331 | 3R | 12446672..12446803 | 384..253 | 210 | 77.3 | Minus |
3L | 28110227 | 3L | 11024334..11024394 | 384..324 | 185 | 86.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 20:39:55 has no hits.
BO12660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:11 Download gff for
BO12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-PA | 431..1227 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:11 Download gff for
BO12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-PA | 431..1227 | 18..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:45 Download gff for
BO12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 803..1596 | 19..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:17:18 Download gff for
BO12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 803..1596 | 19..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:17:18 Download gff for
BO12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13282893..13283085 | 620..812 | 100 | -> | Minus |
3R | 13283293..13283639 | 273..619 | 100 | -> | Minus |
3R | 13283697..13283950 | 19..272 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:45 Download gff for
BO12660.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9108615..9108807 | 620..812 | 100 | -> | Minus |
arm_3R | 9109015..9109361 | 273..619 | 100 | -> | Minus |
arm_3R | 9109419..9109672 | 19..272 | 99 | | Minus |
BO12660.5prime Sequence
783 bp (780 high quality bases) assembled on 2006-05-08
> BO12660.5prime
GAAGTTATCAGTCGACATGTCGCCCAACATAATAGGCAGTACCTTTATAT
TGGCCGAGACGGCCATTGCCGATGGCAACAACAACAAAATGGCTGCCACA
CCAGCTGCTTCCGCCGCCCCTTCAGCAGCCACGCCCAGCCAGAAGGTGGC
CAAGAAAGCGGAGGCCAAGACGCCCGAGAACAAGCCCTACGAACTGGAGA
TCGTCTGGCGCAACGTGGGACTCTTCGTCATCCTCCACTCGATGGCCCTG
TACGGTCTGTACTTGGTGTTCGCCGAGAGTGCCTATTGGGAACTCTTGCC
AGTCTATGCCACCATGTTCCTCGGCGGTCTGGGCATCACGGCCGGAGTGC
ATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCACTGCGCATC
TTCCTCATGCTGTGCCAGTCACTGGCCTTCCAGAACAGCATCTGGGAGTG
GACCCGTGACCACCGCGTGCATCACAAGTTCACCGACACACACGCCGATC
CCCACAACTCCCGACGAGGCTTCTTCTTCGCTCATATGGGCTGGCTGATG
TGCAAGAAGCACCCCGATGTGACCAGCAAGGGCAAGCAGATCTCCATGGA
GGATATTGAGCAGGATCCCGTCGTTATGTTCCAGAAGAAAATGTACTTTG
TGGTTATGCCCATCTGCTGCTTCGCCCTGCCCATGATCTTCCCCTACTAC
GTGATGGGCAGCTCGCTGCGCGTCTGCTTCTTCACCTGCTCCATGCTGCG
CTTCTGCCTGTCGCTGCACTTCACGTGGCTGGT
BO12660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8630-PA | 1227 | CG8630-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8630-RA | 2173 | CG8630-RA | 373..1139 | 17..783 | 3835 | 100 | Plus |
Desat1-RD | 1934 | CG5887-RD | 573..701 | 458..586 | 225 | 80.2 | Plus |
Desat1-RB | 1978 | CG5887-RB | 617..745 | 458..586 | 225 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13282746..13283085 | 300..639 | 1700 | 100 | Plus |
3R | 32079331 | 3R | 13282402..13282687 | 17..302 | 1430 | 100 | Plus |
3R | 32079331 | 3R | 13283293..13283436 | 640..783 | 720 | 100 | Plus |
3R | 32079331 | 3R | 12446133..12446261 | 458..586 | 225 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:27:20 has no hits.
BO12660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:12 Download gff for
BO12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:12 Download gff for
BO12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:32 Download gff for
BO12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 373..1139 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:49 Download gff for
BO12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 373..1139 | 17..783 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:49 Download gff for
BO12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13282402..13282687 | 17..302 | 100 | -> | Plus |
3R | 13282749..13283085 | 303..639 | 100 | -> | Plus |
3R | 13283293..13283436 | 640..783 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:32 Download gff for
BO12660.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9108124..9108409 | 17..302 | 100 | -> | Plus |
arm_3R | 9108471..9108807 | 303..639 | 100 | -> | Plus |
arm_3R | 9109015..9109158 | 640..783 | 100 | | Plus |
BO12660.complete Sequence
1258 bp assembled on 2008-01-17
GenBank Submission: FJ632518
> BO12660.complete
GAAGTTATCAGTCGACATGTCGCCCAACATAATAGGCAGTACCTTTATAT
TGGCCGAGACGGCCATTGCCGATGGCAACAACAACAAAATGGCTGCCACA
CCAGCTGCTTCCGCCGCCCCTTCAGCAGCCACGCCCAGCCAGAAGGTGGC
CAAGAAAGCGGAGGCCAAGACGCCCGAGAACAAGCCCTACGAACTGGAGA
TCGTCTGGCGCAACGTGGGACTCTTCGTCATCCTCCACTCGATGGCCCTG
TACGGTCTGTACTTGGTGTTCGCCGAGAGTGCCTATTGGGAACTCTTGCC
AGTCTATGCCACCATGTTCCTCGGCGGTCTGGGCATCACGGCCGGAGTGC
ATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCACTGCGCATC
TTCCTCATGCTGTGCCAGTCACTGGCCTTCCAGAACAGCATCTGGGAGTG
GACCCGTGACCACCGCGTGCATCACAAGTTCACCGACACACACGCCGATC
CCCACAACTCCCGACGAGGCTTCTTCTTCGCTCATATGGGCTGGCTGATG
TGCAAGAAGCACCCCGATGTGACCAGCAAGGGCAAGCAGATCTCCATGGA
GGATATTGAGCAGGATCCCGTCGTTATGTTCCAGAAGAAAATGTACTTTG
TGGTTATGCCCATCTGCTGCTTCGCCCTGCCCATGATCTTCCCCTACTAC
GTGATGGGCAGCTCGCTGCGCGTCTGCTTCTTCACCTGCTCCATGCTGCG
CTTCTGCCTGTCGCTGCACTTCACGTGGCTGGTAAACAGCGCCGCCCACT
TCTACGGCATGAAGCCCTACGATGTCAATGTGAGCGCCATGAACAACAAG
CTGGTATCCACCCTGACCATCGGCGAGGGATGGCACAACTACCACCACGT
CTTCCCCTGGGATTACAAGGCAGCCGAGCTGGGCACCTACAGTTTCAACT
GGACGACGGCCTTTATCGATGTGATGGCTAAGATCGGACAAGCCTATGAC
CTGAAGTTCGTCTCGCAGGAGATGGTCTACAAGCGAGTCCTTCGCACTGG
CGATGGCTCCCACATTGCCGCCCTGCTGGATGCCAACAACAATAGTGCCA
TTCCGACCAGCGAGCTGGTGGCCCACCTGGATCACGAGAAGGAGGAGCAT
GCCATTTGGGGATGGGACGACAAGGATATCAGCGAGGAGGATCGCAAGGG
AGCCAATGTGGTGAACAAGGAATCCGAATGCAAGCTGGATGCAAGCTTTC
TAGACCAT
BO12660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8630-RA | 1227 | CG8630-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
CG9747-RB | 1386 | CG9747-PB | 985..1063 | 863..941 | 290 | 91.1 | Plus |
CG9747-RA | 1386 | CG9747-PA | 985..1063 | 863..941 | 290 | 91.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8630-RA | 2173 | CG8630-RA | 373..1596 | 17..1240 | 6120 | 100 | Plus |
CG9747-RB | 2318 | CG9747-RB | 1496..1574 | 863..941 | 290 | 91.1 | Plus |
CG9747-RA | 2138 | CG9747-RA | 1316..1394 | 863..941 | 290 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13283293..13283640 | 640..987 | 1740 | 100 | Plus |
3R | 32079331 | 3R | 13282746..13283085 | 300..639 | 1700 | 100 | Plus |
3R | 32079331 | 3R | 13282402..13282687 | 17..302 | 1430 | 100 | Plus |
3R | 32079331 | 3R | 13283696..13283950 | 986..1240 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 30186167..30186245 | 941..863 | 290 | 91.1 | Minus |
3R | 32079331 | 3R | 12446133..12446261 | 458..586 | 225 | 78.3 | Plus |
3R | 32079331 | 3R | 30196918..30197004 | 949..863 | 225 | 83.9 | Minus |
3R | 32079331 | 3R | 12446672..12446803 | 875..1006 | 210 | 77.3 | Plus |
3L | 28110227 | 3L | 11024334..11024394 | 875..935 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:54:12 has no hits.
BO12660.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:45 Download gff for
BO12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 1..1227 | 17..1241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:23 Download gff for
BO12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 371..1594 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:45 Download gff for
BO12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 373..1596 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:45 Download gff for
BO12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 371..1594 | 17..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:20 Download gff for
BO12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8630-RA | 373..1596 | 17..1242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:20 Download gff for
BO12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13283697..13283950 | 987..1242 | 99 | | Plus |
3R | 13282749..13283085 | 303..639 | 100 | -> | Plus |
3R | 13283293..13283639 | 640..986 | 100 | -> | Plus |
3R | 13282402..13282687 | 17..302 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:45 Download gff for
BO12660.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9108124..9108409 | 17..302 | 100 | -> | Plus |
arm_3R | 9108471..9108807 | 303..639 | 100 | -> | Plus |
arm_3R | 9109015..9109361 | 640..986 | 100 | -> | Plus |
arm_3R | 9109419..9109672 | 987..1242 | 99 | | Plus |
BO12660.pep Sequence
Translation from 16 to 1258
> BO12660.pep
MSPNIIGSTFILAETAIADGNNNKMAATPAASAAPSAATPSQKVAKKAEA
KTPENKPYELEIVWRNVGLFVILHSMALYGLYLVFAESAYWELLPVYATM
FLGGLGITAGVHRLWSHKAYKAKLPLRIFLMLCQSLAFQNSIWEWTRDHR
VHHKFTDTHADPHNSRRGFFFAHMGWLMCKKHPDVTSKGKQISMEDIEQD
PVVMFQKKMYFVVMPICCFALPMIFPYYVMGSSLRVCFFTCSMLRFCLSL
HFTWLVNSAAHFYGMKPYDVNVSAMNNKLVSTLTIGEGWHNYHHVFPWDY
KAAELGTYSFNWTTAFIDVMAKIGQAYDLKFVSQEMVYKRVLRTGDGSHI
AALLDANNNSAIPTSELVAHLDHEKEEHAIWGWDDKDISEEDRKGANVVN
KESECKLDASFLDH
BO12660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8630-PA | 408 | CG8630-PA | 1..408 | 1..408 | 2201 | 100 | Plus |
Desat1-PD | 383 | CG5887-PD | 59..383 | 44..404 | 963 | 48.5 | Plus |
Desat1-PB | 383 | CG5887-PB | 59..383 | 44..404 | 963 | 48.5 | Plus |
Desat1-PE | 383 | CG5887-PE | 59..383 | 44..404 | 963 | 48.5 | Plus |
Desat1-PC | 383 | CG5887-PC | 59..383 | 44..404 | 963 | 48.5 | Plus |