Clone Sequence Records
BO12665.3prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO12665.3prime
ATGGTCTAGAAAGCTTGCGAACCGTTTGAGGAACTCCTCGGCGCAGGTGC
GTGCCCTGGCATTGACCGCCAGTTTCATTTCGCTGATCTCCTTGTCGATC
TCCTCCATGAAGCTAATGACAAAGTCCACCAGTTTGTGCTTATACATCTG
CTCCGTGTGGAAGTTGGTGATGAGGAAGCTTATGTCGTAGCCCTCGATGG
GCTTGCGGCGCAGTATGACGAACGACTCGGCGCGTCGCATCATGAACCTG
GTGAACTTGTGGCACAGTATGCGCTCAATCTCGTCGGCCTGCTTCACGGC
GATGCTCACGCGCACCGAGTTAATGGACGGCTCGATCAGCACCTTCTCCC
GCTCGTTGCGCGACACGACGACGGGCGTGAGCACCAGCTCCTTGCTGGAA
CAGATCTCCACCTCCGGCTTGTTGTGCCGCTCCACCACCTGCGAGGGGAA
GTCCTGCAGGCACATCGCCGCCGTCAGCGAGTGTCGCACGGCGGTCAGGT
AGGGCTTCAAAGTGGCTGCCATGTCGACTGATAACT
BO12665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5972-PA | 507 | Arc-p20-RA | 1..504 | 522..19 | 2495 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc4-RA | 712 | CG5972-RA | 118..621 | 522..19 | 2505 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6125249..6125752 | 522..19 | 2505 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:45:07 has no hits.
BO12665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:18 Download gff for
BO12665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5972-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:22 Download gff for
BO12665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5972-PA | 1..507 | 18..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:05 Download gff for
BO12665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc4-RA | 110..621 | 19..530 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:14 Download gff for
BO12665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc4-RA | 110..621 | 19..530 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:14 Download gff for
BO12665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6125241..6125752 | 19..530 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:05 Download gff for
BO12665.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6125241..6125752 | 19..530 | 99 | | Minus |
BO12665.5prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO12665.5prime
GAAGTTATCAGTCGACATGGCAGCCACTTTGAAGCCCTACCTGACCGCCG
TGCGACACTCGCTGACGGCGGCGATGTGCCTGCAGGACTTCCCCTCGCAG
GTGGTGGAGCGGCACAACAAGCCGGAGGTGGAGATCTGTTCCAGCAAGGA
GCTGGTGCTCACGCCCGTCGTCGTGTCGCGCAACGAGCGGGAGAAGGTGC
TGATCGAGCCGTCCATTAACTCGGTGCGCGTGAGCATCGCCGTGAAGCAG
GCCGACGAGATTGAGCGCATACTGTGCCACAAGTTCACCAGGTTCATGAT
GCGACGCGCCGAGTCGTTCGTCATACTGCGCCGCAAGCCCATCGAGGGCT
ACGACATAAGCTTCCTCATCACCAACTTCCACACGGAGCAGATGTATAAG
CACAAACTGGTGGACTTTGTCATTAGCTTCATGGAGGAGATCGACAAGGA
GATCAGCGAAATGAAACTGGCGGTCAATGCCAGGGCACGCACCTGCGCCG
AGGAGTTCCTCAAACGGTTCGCAAGCTTTCTAGACC
BO12665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5972-PA | 507 | Arc-p20-RA | 1..504 | 17..520 | 2495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc4-RA | 712 | CG5972-RA | 118..621 | 17..520 | 2505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6125249..6125752 | 17..520 | 2505 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:01:00 has no hits.
BO12665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:19 Download gff for
BO12665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5972-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:23 Download gff for
BO12665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5972-PA | 1..507 | 17..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:05 Download gff for
BO12665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc4-RA | 110..621 | 9..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:52 Download gff for
BO12665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc4-RA | 110..621 | 9..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:52 Download gff for
BO12665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6125241..6125752 | 9..520 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:05 Download gff for
BO12665.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6125241..6125752 | 9..520 | 99 | | Plus |
BO12665.complete Sequence
538 bp assembled on 2011-06-28
GenBank Submission: KX797699
> BO12665.complete
GAAGTTATCAGTCGACATGGCAGCCACTTTGAAGCCCTACCTGACCGCCG
TGCGACACTCGCTGACGGCGGCGATGTGCCTGCAGGACTTCCCCTCGCAG
GTGGTGGAGCGGCACAACAAGCCGGAGGTGGAGATCTGTTCCAGCAAGGA
GCTGGTGCTCACGCCCGTCGTCGTGTCGCGCAACGAGCGGGAGAAGGTGC
TGATCGAGCCGTCCATTAACTCGGTGCGCGTGAGCATCGCCGTGAAGCAG
GCCGACGAGATTGAGCGCATACTGTGCCACAAGTTCACCAGGTTCATGAT
GCGACGCGCCGAGTCGTTCGTCATACTGCGCCGCAAGCCCATCGAGGGCT
ACGACATAAGCTTCCTCATCACCAACTTCCACACGGAGCAGATGTATAAG
CACAAACTGGTGGACTTTGTCATTAGCTTCATGGAGGAGATCGACAAGGA
GATCAGCGAAATGAAACTGGCGGTCAATGCCAGGGCACGCACCTGCGCCG
AGGAGTTCCTCAAACGGTTCGCAAGCTTTCTAGACCAT
BO12665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc4-RA | 507 | CG5972-PA | 1..504 | 17..520 | 2505 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc4-RA | 712 | CG5972-RA | 118..621 | 17..520 | 2505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6125249..6125752 | 17..520 | 2505 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:20:26 has no hits.
BO12665.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:36 Download gff for
BO12665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc-p20-RA | 112..615 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:23 Download gff for
BO12665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc4-RA | 118..621 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:45 Download gff for
BO12665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arpc4-RA | 118..621 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:45 Download gff for
BO12665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6125249..6125752 | 17..522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:23 Download gff for
BO12665.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6125249..6125752 | 17..522 | 99 | | Plus |
BO12665.pep Sequence
Translation from 16 to 538
> BO12665.pep
MAATLKPYLTAVRHSLTAAMCLQDFPSQVVERHNKPEVEICSSKELVLTP
VVVSRNEREKVLIEPSINSVRVSIAVKQADEIERILCHKFTRFMMRRAES
FVILRRKPIEGYDISFLITNFHTEQMYKHKLVDFVISFMEEIDKEISEMK
LAVNARARTCAEEFLKRFASFLDH
BO12665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arpc4-PA | 168 | CG5972-PA | 1..168 | 1..168 | 844 | 100 | Plus |