Clone BO12665 Report

Search the DGRC for BO12665

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptArc-p20-RA
Protein status:BO12665.pep: Imported from assembly
Sequenced Size:538

Clone Sequence Records

BO12665.3prime Sequence

536 bp (535 high quality bases) assembled on 2006-05-08

> BO12665.3prime
ATGGTCTAGAAAGCTTGCGAACCGTTTGAGGAACTCCTCGGCGCAGGTGC
GTGCCCTGGCATTGACCGCCAGTTTCATTTCGCTGATCTCCTTGTCGATC
TCCTCCATGAAGCTAATGACAAAGTCCACCAGTTTGTGCTTATACATCTG
CTCCGTGTGGAAGTTGGTGATGAGGAAGCTTATGTCGTAGCCCTCGATGG
GCTTGCGGCGCAGTATGACGAACGACTCGGCGCGTCGCATCATGAACCTG
GTGAACTTGTGGCACAGTATGCGCTCAATCTCGTCGGCCTGCTTCACGGC
GATGCTCACGCGCACCGAGTTAATGGACGGCTCGATCAGCACCTTCTCCC
GCTCGTTGCGCGACACGACGACGGGCGTGAGCACCAGCTCCTTGCTGGAA
CAGATCTCCACCTCCGGCTTGTTGTGCCGCTCCACCACCTGCGAGGGGAA
GTCCTGCAGGCACATCGCCGCCGTCAGCGAGTGTCGCACGGCGGTCAGGT
AGGGCTTCAAAGTGGCTGCCATGTCGACTGATAACT

BO12665.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5972-PA 507 Arc-p20-RA 1..504 522..19 2495 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc4-RA 712 CG5972-RA 118..621 522..19 2505 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6125249..6125752 522..19 2505 99.8 Minus
Blast to na_te.dros performed on 2015-02-01 04:45:07 has no hits.

BO12665.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:18 Download gff for BO12665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5972-PA 1..507 18..522 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:22 Download gff for BO12665.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5972-PA 1..507 18..522 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:05 Download gff for BO12665.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc4-RA 110..621 19..530 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:14 Download gff for BO12665.3prime
Subject Subject Range Query Range Percent Splice Strand
Arpc4-RA 110..621 19..530 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:14 Download gff for BO12665.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6125241..6125752 19..530 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:05 Download gff for BO12665.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6125241..6125752 19..530 99   Minus

BO12665.5prime Sequence

536 bp (535 high quality bases) assembled on 2006-05-08

> BO12665.5prime
GAAGTTATCAGTCGACATGGCAGCCACTTTGAAGCCCTACCTGACCGCCG
TGCGACACTCGCTGACGGCGGCGATGTGCCTGCAGGACTTCCCCTCGCAG
GTGGTGGAGCGGCACAACAAGCCGGAGGTGGAGATCTGTTCCAGCAAGGA
GCTGGTGCTCACGCCCGTCGTCGTGTCGCGCAACGAGCGGGAGAAGGTGC
TGATCGAGCCGTCCATTAACTCGGTGCGCGTGAGCATCGCCGTGAAGCAG
GCCGACGAGATTGAGCGCATACTGTGCCACAAGTTCACCAGGTTCATGAT
GCGACGCGCCGAGTCGTTCGTCATACTGCGCCGCAAGCCCATCGAGGGCT
ACGACATAAGCTTCCTCATCACCAACTTCCACACGGAGCAGATGTATAAG
CACAAACTGGTGGACTTTGTCATTAGCTTCATGGAGGAGATCGACAAGGA
GATCAGCGAAATGAAACTGGCGGTCAATGCCAGGGCACGCACCTGCGCCG
AGGAGTTCCTCAAACGGTTCGCAAGCTTTCTAGACC

BO12665.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5972-PA 507 Arc-p20-RA 1..504 17..520 2495 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:04
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc4-RA 712 CG5972-RA 118..621 17..520 2505 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6125249..6125752 17..520 2505 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 00:01:00 has no hits.

BO12665.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:19 Download gff for BO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5972-PA 1..507 17..521 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:23 Download gff for BO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5972-PA 1..507 17..521 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:43:05 Download gff for BO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc4-RA 110..621 9..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:52 Download gff for BO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
Arpc4-RA 110..621 9..520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:52 Download gff for BO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6125241..6125752 9..520 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:43:05 Download gff for BO12665.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6125241..6125752 9..520 99   Plus

BO12665.complete Sequence

538 bp assembled on 2011-06-28

GenBank Submission: KX797699

> BO12665.complete
GAAGTTATCAGTCGACATGGCAGCCACTTTGAAGCCCTACCTGACCGCCG
TGCGACACTCGCTGACGGCGGCGATGTGCCTGCAGGACTTCCCCTCGCAG
GTGGTGGAGCGGCACAACAAGCCGGAGGTGGAGATCTGTTCCAGCAAGGA
GCTGGTGCTCACGCCCGTCGTCGTGTCGCGCAACGAGCGGGAGAAGGTGC
TGATCGAGCCGTCCATTAACTCGGTGCGCGTGAGCATCGCCGTGAAGCAG
GCCGACGAGATTGAGCGCATACTGTGCCACAAGTTCACCAGGTTCATGAT
GCGACGCGCCGAGTCGTTCGTCATACTGCGCCGCAAGCCCATCGAGGGCT
ACGACATAAGCTTCCTCATCACCAACTTCCACACGGAGCAGATGTATAAG
CACAAACTGGTGGACTTTGTCATTAGCTTCATGGAGGAGATCGACAAGGA
GATCAGCGAAATGAAACTGGCGGTCAATGCCAGGGCACGCACCTGCGCCG
AGGAGTTCCTCAAACGGTTCGCAAGCTTTCTAGACCAT

BO12665.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc4-RA 507 CG5972-PA 1..504 17..520 2505 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc4-RA 712 CG5972-RA 118..621 17..520 2505 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6125249..6125752 17..520 2505 99.8 Plus
Blast to na_te.dros performed on 2014-11-26 16:20:26 has no hits.

BO12665.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:36 Download gff for BO12665.complete
Subject Subject Range Query Range Percent Splice Strand
Arc-p20-RA 112..615 17..522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:23 Download gff for BO12665.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc4-RA 118..621 17..522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:45 Download gff for BO12665.complete
Subject Subject Range Query Range Percent Splice Strand
Arpc4-RA 118..621 17..522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:45 Download gff for BO12665.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6125249..6125752 17..522 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:23 Download gff for BO12665.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6125249..6125752 17..522 99   Plus

BO12665.pep Sequence

Translation from 16 to 538

> BO12665.pep
MAATLKPYLTAVRHSLTAAMCLQDFPSQVVERHNKPEVEICSSKELVLTP
VVVSRNEREKVLIEPSINSVRVSIAVKQADEIERILCHKFTRFMMRRAES
FVILRRKPIEGYDISFLITNFHTEQMYKHKLVDFVISFMEEIDKEISEMK
LAVNARARTCAEEFLKRFASFLDH

BO12665.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
Arpc4-PA 168 CG5972-PA 1..168 1..168 844 100 Plus