Clone Sequence Records
BO12668.3prime Sequence
717 bp (686 high quality bases) assembled on 2006-05-08
> BO12668.3prime
ATGGTCTAGAAAGCCTTGCCGATGCGTTCGAAACCGGAAGCGTTACGGGC
GCCTGTCTATAGTACGCATTCGCACCCTTGATCGGCAGCGGATGGGCCTC
CGTGTTGAACACCCATTCGTCCAGCGGCAGCACCGAATCGTCCGAGAACA
GCAAGTACAGGTACTTAAGCGTTTCGGCGAGGAAGAAGCTTTGCTGAACG
TCGTCCTTTTGCGGCTCCTGCTGGTAGACGTTGCGCAGGCCACAATATCC
GTGCGCCGTGCGGCAGTGCTTCTCCAGGGCGAGGACCGCCTCCCAGCCCC
AGTCGCGGTATTTCTGGTCGTGCGTGAGTCGCCACAGCACAAAGTAGCTC
TCGAAAGTCTCTGGCCGTAGAATGTAGTACTTCTCCTGCGATCTCAGCGC
TCGCGCCTCCACAGCTTCGCTGAATCTAAAGGCCTCGGGTCCCAGCTGAG
TGGGTGCTCTGATGTAGCTCTCGTGGCAGGTATTCGTAATGCCCTTGCCC
ACCTCCATGTACTTGTCCGTATAGTCATTTTGACGTGTAGCCGCTCCCAA
AGCGAAGAGGCCACCCGAGAAGCAAGCCAAATGGTCCATCTTATGCTCCA
GCCTGTCGAACTTGAGATCAGAGACGTATGTCAGTCCGCCGGGACTTGTG
CGGACCATCTTATCCAGAATGGCCAGCATTGCCTCGTCGAACATCTCGCG
GGCTTCCTCATCCGTTT
BO12668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32684-PA | 2004 | alpha-Man-I-RA | 1304..2001 | 717..20 | 3465 | 99.8 | Minus |
| CG32684-PB | 1932 | alpha-Man-I-RB | 1232..1929 | 717..20 | 3465 | 99.8 | Minus |
| CG32684-PC | 2004 | alpha-Man-I-RC | 1304..2001 | 717..20 | 3465 | 99.8 | Minus |
| CG32684-PD | 2004 | alpha-Man-I-RD | 1304..2001 | 717..20 | 3465 | 99.8 | Minus |
| CG32684-PE | 2004 | alpha-Man-I-RE | 1304..2001 | 717..20 | 3465 | 99.8 | Minus |
| CG32684-PF | 2004 | alpha-Man-I-RF | 1304..2001 | 717..20 | 3465 | 99.8 | Minus |
| CG32684-PG | 2004 | alpha-Man-I-RG | 1304..2001 | 717..20 | 3465 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RP | 3156 | CG42275-RP | 1518..2215 | 717..20 | 3475 | 99.9 | Minus |
| alpha-Man-I-RO | 3808 | CG42275-RO | 1607..2304 | 717..20 | 3475 | 99.9 | Minus |
| alpha-Man-I-RN | 3853 | CG42275-RN | 1652..2349 | 717..20 | 3475 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10277761..10278027 | 164..430 | 1320 | 99.6 | Plus |
| X | 23542271 | X | 10278291..10278445 | 563..717 | 775 | 100 | Plus |
| X | 23542271 | X | 10277559..10277704 | 20..165 | 730 | 100 | Plus |
| X | 23542271 | X | 10278092..10278231 | 426..565 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:31:38 has no hits.
BO12668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:24 Download gff for
BO12668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32684-PG | 1304..2004 | 16..717 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:31 Download gff for
BO12668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32684-PG | 1304..2004 | 16..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:25:09 Download gff for
BO12668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RN | 1651..2351 | 16..717 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:20 Download gff for
BO12668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RN | 1652..2352 | 16..717 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:20 Download gff for
BO12668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10277555..10277702 | 16..163 | 98 | <- | Plus |
| X | 10277761..10278022 | 164..425 | 99 | <- | Plus |
| X | 10278092..10278230 | 426..564 | 100 | <- | Plus |
| X | 10278293..10278445 | 565..717 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:25:09 Download gff for
BO12668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10171588..10171735 | 16..163 | 98 | <- | Plus |
| arm_X | 10171794..10172055 | 164..425 | 99 | <- | Plus |
| arm_X | 10172125..10172263 | 426..564 | 100 | <- | Plus |
| arm_X | 10172326..10172478 | 565..717 | 100 | | Plus |
BO12668.5prime Sequence
760 bp (756 high quality bases) assembled on 2006-05-08
> BO12668.5prime
GAAGTTATCAGTCGACATGTATCGCATCAGTCCAATTGGACGCAAATCGA
ACTTCCACTCGCGCGAAAAATGTCTGATTGGACTCGTCCTGGTAACGTTG
TGCTTCCTCTGCTTCGGCGGCATCTTCCTTCTGCCGGACAATTTCGGCAG
CGATCGTGTCCTGCGCGTCTACAAGCACTTCCGAAAGGCCGGACCGGAGA
TCTTTATCCCAGCCCCGCCCCTCGCCGCACACGCCCCCCATCGCAGCGAG
GATCCACATTTCATTGGCGATCGCCAACGTTTGGAGCAAAAGATTCGCGC
CGAATTGGGCGATATGCTCGATGAGCCACCGGCTGCGGGTGGAGGCGAAC
CTGGACAATTCCAGGTGCTCGCCCAACAGGCTCAGGCTCCAGCACCCGTC
GCCGCTCTGGCGGATCAGCCGCTGGATCAGGACGAGGGACACGCCGCCAT
TCCCGTTCTGGCCGCCCCAGTTCAGGGGGACAATGCCGCCAGCCAGGCCT
CGTCCCATCCACAAAGTTCCGCCCAGCAGCACAACCAGCAGCAACCACAA
CTGCCATTGGGTGGCGGTGGCAATGATCAGGCGCCGGACACACTGGACGC
CACACTGGAAGAACGGCGTCAGAAGGTCAAAGAGATGATGGAACATGCGT
GGCACAATTACAAATTGTATGCGTGGGGCAAAAACGAGCTGCGTCCGCTT
TCGCAGCGACCCCATTCGGCCAGTATTTTTGGATCATACGATCTGGGTGC
TACAATCGTC
BO12668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32684-PA | 2004 | alpha-Man-I-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG32684-PC | 2004 | alpha-Man-I-RC | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG32684-PD | 2004 | alpha-Man-I-RD | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG32684-PE | 2004 | alpha-Man-I-RE | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG32684-PF | 2004 | alpha-Man-I-RF | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG32684-PG | 2004 | alpha-Man-I-RG | 1..744 | 17..760 | 3720 | 100 | Plus |
| CG32684-PB | 1932 | alpha-Man-I-RB | 545..672 | 633..760 | 640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RO | 3808 | CG42275-RO | 303..1047 | 16..760 | 3725 | 100 | Plus |
| alpha-Man-I-RN | 3853 | CG42275-RN | 348..1092 | 16..760 | 3725 | 100 | Plus |
| alpha-Man-I-RM | 3961 | CG42275-RM | 456..1200 | 16..760 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10323566..10324184 | 634..16 | 3095 | 100 | Minus |
| X | 23542271 | X | 10279066..10279193 | 760..633 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:12:03 has no hits.
BO12668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:25 Download gff for
BO12668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32684-PD | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:32 Download gff for
BO12668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32684-PA | 1..744 | 17..760 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:51:22 Download gff for
BO12668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 440..1199 | 2..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:28 Download gff for
BO12668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 441..1200 | 2..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:28 Download gff for
BO12668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10279066..10279191 | 635..760 | 100 | <- | Minus |
| X | 10323566..10324198 | 2..634 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:51:22 Download gff for
BO12668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10173099..10173224 | 635..760 | 100 | <- | Minus |
| arm_X | 10217599..10218231 | 2..634 | 99 | | Minus |
BO12668.complete Sequence
2036 bp assembled on 2008-08-14
> BO12668.complete
GAAGTTATCAGTCGACATGTATCGCATCAGTCCAATTGGACGCAAATCGA
ACTTCCACTCGCGCGAAAAATGTCTGATTGGACTCGTCCTGGTAACGTTG
TGCTTCCTCTGCTTCGGCGGCATCTTCCTTCTGCCGGACAATTTCGGCAG
CGATCGTGTCCTGCGCGTCTACAAGCACTTCCGAAAGGCCGGACCGGAGA
TCTTTATCCCAGCCCCGCCCCTCGCCGCACACGCCCCCCATCGCAGCGAG
GATCCACATTTCATTGGCGATCGCCAACGTTTGGAGCAAAAGATTCGCGC
CGAATTGGGCGATATGCTCGATGAGCCACCGGCTGCGGGTGGAGGCGAAC
CTGGACAATTCCAGGTGCTCGCCCAACAGGCTCAGGCTCCAGCACCCGTC
GCCGCTCTGGCGGATCAGCCGCTGGATCAGGACGAGGGACACGCCGCCAT
TCCCGTTCTGGCCGCCCCAGTTCAGGGGGACAATGCCGCCAGCCAGGCCT
CGTCCCATCCACAAAGTTCCGCCCAGCAGCACAACCAGCAGCAACCACAA
CTGCCATTGGGTGGCGGTGGCAATGATCAGGCGCCGGACACACTGGACGC
CACACTGGAAGAACGGCGTCAGAAGGTCAAAGAGATGATGGAACATGCGT
GGCACAATTACAAATTGTATGCGTGGGGCAAAAACGAGCTGCGTCCGCTT
TCGCAGCGACCCCATTCGGCCAGTATTTTTGGATCATACGATCTGGGTGC
TACAATCGTCGACGGTCTGGATACCCTGTACATTATGGGACTGGAGAAGG
AATATCGCGAGGGTCGCGATTGGATCGAGCGAAAATTCTCACTGGACAAT
ATCAGCGCAGAGTTGAGTGTTTTCGAAACGAACATTCGTTTTGTTGGCGG
CATGCTGACGCTGTACGCCTTTACGGGCGATCCACTGTACAAGGAGAAGG
CCCAGCACGTTGCCGACAAGCTGCTGCCCGCCTTCCAAACACCAACGGGT
ATTCCCTACGCGCTGGTCAACACCAAGACCGGTGTGGCCAAGAACTACGG
CTGGGCATCCGGCGGCAGTTCTATCCTATCCGAATTTGGCACACTGCATC
TGGAATTTGCCTATCTGAGCGACATTACCGGGAATCCACTGTATCGGGAA
CGAGTCCAGACCATTCGCCAAGTGCTCAAGGAGATCGAGAAACCAAAGGG
CCTCTATCCCAACTTCCTTAATCCCAAGACAGGCAAATGGGGGCAACTTC
ACATGTCATTGGGCGCTCTGGGCGACAGCTACTACGAGTACTTGCTGAAG
GCCTGGCTGCAATCCGGCCAAACGGATGAGGAAGCCCGCGAGATGTTCGA
CGAGGCAATGCTGGCCATTCTGGATAAGATGGTCCGCACAAGTCCCGGCG
GACTGACATACGTCTCTGATCTCAAGTTCGACAGGCTGGAGCATAAGATG
GACCATTTGGCTTGCTTCTCGGGTGGCCTCTTCGCTTTGGGAGCGGCTAC
ACGTCAAAATGACTATACGGACAAGTACATGGAGGTGGGCAAGGGCATTA
CGAATACCTGCCACGAGAGCTACATCAGAGCACCCACTCAGCTGGGACCC
GAGGCCTTTAGATTCAGCGAAGCTGTGGAGGCGCGAGCGCTGAGATCGCA
GGAGAAGTACTACATTCTACGGCCAGAGACTTTCGAGAGCTACTTTGTGC
TGTGGCGACTCACGCACGACCAGAAATACCGCGACTGGGGCTGGGAGGCG
GTCCTCGCCCTGGAGAAGCACTGCCGCACGGCGCACGGATATTGTGGCCT
GCGCAACGTCTACCAGCAGGAGCCGCAAAAGGACGACGTTCAGCAAAGCT
TCTTCCTCGCCGAAACGCTTAAGTACCTGTACTTGCTGTTCTCGGACGAT
TCGGTGCTGCCGCTGGACGAATGGGTGTTCAACACGGAGGCCCATCCGCT
GCCGATCAAGGGTGCGAATGCGTACTATAGACAGGCGCCCGTAACGCTTC
CGGTTTCGAACGCATCGGCAAGGCTTTCTAGACCAT
BO12668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RO | 2004 | CG42275-PO | 1..2001 | 17..2017 | 9990 | 100 | Plus |
| alpha-Man-I-RN | 2004 | CG42275-PN | 1..2001 | 17..2017 | 9990 | 100 | Plus |
| alpha-Man-I-RM | 2004 | CG42275-PM | 1..2001 | 17..2017 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-RO | 3808 | CG42275-RO | 303..2304 | 16..2017 | 9995 | 100 | Plus |
| alpha-Man-I-RN | 3853 | CG42275-RN | 348..2349 | 16..2017 | 9995 | 100 | Plus |
| alpha-Man-I-RM | 3961 | CG42275-RM | 456..2457 | 16..2017 | 9995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10323566..10324184 | 634..16 | 3095 | 100 | Minus |
| X | 23542271 | X | 10278579..10279193 | 1247..633 | 3075 | 100 | Minus |
| X | 23542271 | X | 10277761..10278027 | 1873..1607 | 1320 | 99.6 | Minus |
| X | 23542271 | X | 10278291..10278517 | 1474..1248 | 1135 | 100 | Minus |
| X | 23542271 | X | 10277559..10277704 | 2017..1872 | 730 | 100 | Minus |
| X | 23542271 | X | 10278092..10278231 | 1611..1472 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:13:47 has no hits.
BO12668.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:09 Download gff for
BO12668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RE | 440..2459 | 2..2021 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:39 Download gff for
BO12668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 456..2456 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:26 Download gff for
BO12668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RE | 456..2456 | 17..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:18 Download gff for
BO12668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Man-I-RM | 457..2457 | 17..2019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:18 Download gff for
BO12668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10277557..10277702 | 1874..2019 | 98 | <- | Minus |
| X | 10277761..10278022 | 1612..1873 | 99 | <- | Minus |
| X | 10278092..10278230 | 1473..1611 | 100 | <- | Minus |
| X | 10278293..10278517 | 1248..1472 | 100 | <- | Minus |
| X | 10278579..10279191 | 635..1247 | 100 | <- | Minus |
| X | 10323566..10324183 | 17..634 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:39 Download gff for
BO12668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10171590..10171735 | 1874..2019 | 98 | <- | Minus |
| arm_X | 10171794..10172055 | 1612..1873 | 99 | <- | Minus |
| arm_X | 10172125..10172263 | 1473..1611 | 100 | <- | Minus |
| arm_X | 10172326..10172550 | 1248..1472 | 100 | <- | Minus |
| arm_X | 10172612..10173224 | 635..1247 | 100 | <- | Minus |
| arm_X | 10217599..10218216 | 17..634 | 100 | | Minus |
BO12668.pep Sequence
Translation from 16 to 2035
> BO12668.pep
MYRISPIGRKSNFHSREKCLIGLVLVTLCFLCFGGIFLLPDNFGSDRVLR
VYKHFRKAGPEIFIPAPPLAAHAPHRSEDPHFIGDRQRLEQKIRAELGDM
LDEPPAAGGGEPGQFQVLAQQAQAPAPVAALADQPLDQDEGHAAIPVLAA
PVQGDNAASQASSHPQSSAQQHNQQQPQLPLGGGGNDQAPDTLDATLEER
RQKVKEMMEHAWHNYKLYAWGKNELRPLSQRPHSASIFGSYDLGATIVDG
LDTLYIMGLEKEYREGRDWIERKFSLDNISAELSVFETNIRFVGGMLTLY
AFTGDPLYKEKAQHVADKLLPAFQTPTGIPYALVNTKTGVAKNYGWASGG
SSILSEFGTLHLEFAYLSDITGNPLYRERVQTIRQVLKEIEKPKGLYPNF
LNPKTGKWGQLHMSLGALGDSYYEYLLKAWLQSGQTDEEAREMFDEAMLA
ILDKMVRTSPGGLTYVSDLKFDRLEHKMDHLACFSGGLFALGAATRQNDY
TDKYMEVGKGITNTCHESYIRAPTQLGPEAFRFSEAVEARALRSQEKYYI
LRPETFESYFVLWRLTHDQKYRDWGWEAVLALEKHCRTAHGYCGLRNVYQ
QEPQKDDVQQSFFLAETLKYLYLLFSDDSVLPLDEWVFNTEAHPLPIKGA
NAYYRQAPVTLPVSNASARLSRP
BO12668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Man-I-PO | 667 | CG42275-PO | 1..667 | 1..667 | 3541 | 100 | Plus |
| alpha-Man-I-PN | 667 | CG42275-PN | 1..667 | 1..667 | 3541 | 100 | Plus |
| alpha-Man-I-PM | 667 | CG42275-PM | 1..667 | 1..667 | 3541 | 100 | Plus |
| alpha-Man-I-PL | 667 | CG42275-PL | 1..667 | 1..667 | 3541 | 100 | Plus |
| alpha-Man-I-PH | 667 | CG32684-PG | 1..667 | 1..667 | 3541 | 100 | Plus |
