Clone BO12670 Report

Search the DGRC for BO12670

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG7757-RB
Protein status:BO12670.pep:
Sequenced Size:1618

Clone Sequence Records

BO12670.3prime Sequence

863 bp (705 high quality bases) assembled on 2006-05-08

> BO12670.3prime
ATGGTCTAGAAAGCTTGCCTGCTGATCCGTGGAGGCCTCAAGCACGGCTC
CGGAGTAGGCCAGATCCCAGTAGTGTTCGACCTGGTGCTTCTGAAAAAAC
TCACGGGCCATTTTTTCCATTGGAAAGATCTTAAACTTGATCTCGCCAAA
GTGCCGTCGCTGACTAGTCCCCTCCCAGACGAGTACGCATGAGTTCGGCA
CGTCCTGGCCGTCATTGCCCTTGGCGTTGTCCTCCTCCCACTTAATGCGC
GTTAGCATGAGCCTGCGATACTTTTTCTGCTGCTTGGGCCCACCCTCCAC
GACAACCACACAGCAATCCCGGAACAACACCACGCTGCCGGTCATCTGCA
GCTGCTTGGCATTGGTCTCCACCTTGAATTTCTTGCTCTGGTTGTCCTGC
AGATCTCGTATGCGATAGACGCTGACATGTACACCGCAGCTGGTGTCTTC
CCTCAGCTTGCGCTGCTTCTTTTCGCTCTTCTGCTCGCTGGTCAGCTTGC
GCGCATTGTTGGCATCTTCGTGCGCCTTCTGCCGCTTGGCCATCTGGTCG
CGCACATGCTGCTCCATTTTGGTCGGATCTTGTACGGCCTCCGAGCCAAG
CACACGCATCAGGTTGGATATGCGCAGTTTCGGCTCTGGTGGGGCCACCA
AACCCAGTCGGATCTTCTCCTGCTCCTCCTTCCAGGCCTCGCGACGGTTC
TGGCGACGAAGCTTTTTGCGCTCTTTCTTTGTGAGGAAAACCGGCAGATA
CACTGGTTTCAAGGGCTCATTTGGCGGCTTCATTTGTGTGGGATGCTCTA
TAAGGTTGGTTATGGCTGTTTGGCGTATGCTTATCTTACCGCTTGCGTCG
TCTACCGTCTCCA

BO12670.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG7757-PA 1797 CG7757-RA 950..1794 863..19 4225 100 Minus
CG7757-PB 1587 CG7757-RB 740..1584 863..19 4225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Prp3-RB 2082 CG7757-RB 1059..1903 863..19 4225 100 Minus
Prp3-RA 2148 CG7757-RA 1125..1969 863..19 4225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19911574..19912325 770..19 3760 100 Minus
3L 28110227 3L 19911427..19911519 863..771 465 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:19:50 has no hits.

BO12670.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:28 Download gff for BO12670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7757-PB 741..1587 18..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:36 Download gff for BO12670.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7757-PB 741..1587 18..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:24 Download gff for BO12670.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp3-RA 1126..1969 19..862 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:21 Download gff for BO12670.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp3-RA 1126..1969 19..862 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:21 Download gff for BO12670.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19911428..19911519 771..862 100 -> Minus
3L 19911574..19912325 19..770 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:24 Download gff for BO12670.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19904528..19904619 771..862 100 -> Minus
arm_3L 19904674..19905425 19..770 100   Minus

BO12670.5prime Sequence

917 bp (772 high quality bases) assembled on 2006-05-08

> BO12670.5prime
GAAGTTATCAGTCGACATGATGGCCCATGCCCAGCGGGAGATCGAGGAAC
GCAAGCGGGCCCTGAGTAATCTAAGAGACAAGGATCCGCTGCTGGCGTCA
GTTCCATCGATCGGAATGCCAGTTGCCTTAGCCACTCAAGCGCTGGCGAA
GAAGCCCACGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGCCGAGTTGC
AGGCACAGATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTTTGATTCAG
CCCACTGCGGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCGCAGGAGCG
ACCCAAACCCCTGATTCTGGACGATGAAGGACGCACTGTGGACAAGAGCG
GACGTACCATTAATATTCCCACGGTGACACCTACATTGAAAGCCAACATA
CGCGCCAAGAAACGGGAGGTGTTCCAACGCCAAACGGGTTTGGGTGAACG
GAGTGAATCGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTACTTTGACG
ACCGCATAGCCCTGAAGCCCACTGTTAGAACCAAGAGGACGTTGAGATTC
CACGAGCCCGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGCATGAAAAG
CCAGCTGGAGCGACTACAGAATGAGATTTCGCAAATAGCCCGGAAAACGG
GCATCTCGTCGGCCACCAAACTGGCATTGATTGCCCCCAAGCAGGACATG
CCGGACGATGTGCCTGCCATGGAGTGGTGGGACTCAGTTATACTGACCCA
GGATCTGGAGACGGTAGACGACGCAAGCGGTAAGATAAGCATACGCCAAA
CAGCCATAACCAAACTTATAGAGCATCCCACACAAATGAAGCCGCCAAAT
GAGCCCCTGAAACCAGTGTATCTGCCGGTTTTCCTCACAAAGAAAGAGCG
CAAAAAGCTTCCTCGCC

BO12670.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7757-PA 1797 CG7757-RA 211..1111 17..917 4430 99.6 Plus
CG7757-PB 1587 CG7757-RB 1..901 17..917 4430 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
Prp3-RB 2082 CG7757-RB 320..1220 17..917 4460 99.7 Plus
Prp3-RA 2148 CG7757-RA 386..1286 17..917 4460 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19910688..19911519 17..848 4145 99.9 Plus
3L 28110227 3L 19911574..19911642 849..917 315 97.1 Plus
Blast to na_te.dros performed on 2015-02-13 02:27:11 has no hits.

BO12670.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:29 Download gff for BO12670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7757-PB 1..901 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:37 Download gff for BO12670.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7757-PB 1..901 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:31 Download gff for BO12670.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp3-RA 386..1286 17..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:17 Download gff for BO12670.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp3-RA 386..1286 17..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:17 Download gff for BO12670.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19910688..19911519 17..848 99 -> Plus
3L 19911574..19911642 849..917 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:31 Download gff for BO12670.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19904674..19904742 849..917 97   Plus
arm_3L 19903788..19904619 17..848 99 -> Plus

BO12670.complete Sequence

1618 bp assembled on 2008-01-17

GenBank Submission: FJ632519

> BO12670.complete
GAAGTTATCAGTCGACATGATGGCCCATGCCCAGCGGGAGATCGAGGAAC
GCAAGCGGGCCCTGAGTAATCTAAGAGACAAGGATCCGCTGCTGGCGTCA
GTTCCATCGATCGGAATGCCAGTTGCCTTAGCCACTCAAGCGCTGGCGAA
GAAGCCCACGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGCCGAGTTGC
AGGCACAGATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTTTGATTCAG
CCCACTGCGGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCGCAGGAGCG
ACCCAAACCCCTGATTCTGGACGATGAAGGACGCACTGTGGACAAGAGCG
GACGTACCATTAATATTCCCACGGTGACACCTACATTGAAAGCCAACATA
CGCGCCAAGAAACGGGAGGTGTTCCAACGCCAAACGGGTTTGGGTGAACG
GAGTGAATCGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTACTTTGACG
ACCGCATAGCCCTGAAGCCCACTGTTAGAACCAAGAGGACGTTGAGATTC
CACGAGCCCGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGCATGAAAAG
CCAGCTGGAGCGACTACAGAATGAGATTTCGCAAATAGCCCGGAAAACGG
GCATCTCGTCGGCCACCAAACTGGCATTGATTGCCCCCAAGCAGGACATG
CCGGACGATGTGCCTGCCATGGAGTGGTGGGACTCAGTTATACTGACCCA
GGATCTGGAGACGGTAGACGACGCAAGCGGTAAGATAAGCATACGCCAAA
CAGCCATAACCAACCTTATAGAGCATCCCACACAAATGAAGCCGCCAAAT
GAGCCCTTGAAACCAGTGTATCTGCCGGTTTTCCTCACAAAGAAAGAGCG
CAAAAAGCTTCGTCGCCAGAACCGTCGCGAGGCCTGGAAGGAGGAGCAGG
AGAAGATCCGACTGGGTTTGGTGGCCCCACCAGAGCCGAAACTGCGCATA
TCCAACCTGATGCGTGTGCTTGGCTCGGAGGCCGTACAAGATCCGACCAA
AATGGAGCAGCATGTGCGCGACCAGATGGCCAAGCGGCAGAAGGCGCACG
AAGATGCCAACAATGCGCGCAAGCTGACCAGCGAGCAGAAGAGCGAAAAG
AAGCAGCGCAAGCTGAGGGAAGACACCAGCTGCGGTGTACATGTCAGCGT
CTATCGCATACGAGATCTGCAGGACAACCAGAGCAAGAAATTCAAGGTGG
AGACCAATGCCAAGCAGCTGCAGATGACCGGCAGCGTGGTGTTGTTCCGG
GATTGCTGTGTGGTTGTCGTGGAGGGTGGGCCCAAGCAGCAGAAAAAGTA
TCGCAGGCTCATGCTAACGCGCATTAAGTGGGAGGAGGACAACGCCAAGG
GCAATGACGGCCAGGACGTGCCGAACTCATGCGTACTCGTCTGGGAGGGG
ACTAGTCAGCGACGGCACTTTGGCGAGATCAAGTTTAAGATCTTTCCAAT
GGAAAAAATGGCCCGTGAGTTTTTTCAGAAGCACCAGGTCGAACACTACT
GGGATCTGGCCTACTCCGGAGCCGTGCTTGAGGCCTCCACGGATCAGCAG
GCAAGCTTTCTAGACCAT

BO12670.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Prp3-RB 1587 CG7757-PB 1..1584 17..1600 7920 100 Plus
Prp3-RA 1797 CG7757-PA 211..1794 17..1600 7920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Prp3-RB 2082 CG7757-RB 320..1903 17..1600 7920 100 Plus
Prp3-RA 2148 CG7757-RA 386..1969 17..1600 7920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19910688..19911519 17..848 4160 100 Plus
3L 28110227 3L 19911574..19912325 849..1600 3760 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:05:38 has no hits.

BO12670.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:47 Download gff for BO12670.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RB 1..1587 17..1601 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:55 Download gff for BO12670.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RB 275..1858 17..1602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:10 Download gff for BO12670.complete
Subject Subject Range Query Range Percent Splice Strand
Prp3-RA 386..1969 17..1602 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:47 Download gff for BO12670.complete
Subject Subject Range Query Range Percent Splice Strand
CG7757-RB 275..1858 17..1600 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:15 Download gff for BO12670.complete
Subject Subject Range Query Range Percent Splice Strand
Prp3-RA 386..1969 17..1602 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:15 Download gff for BO12670.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19910688..19911519 17..848 100 -> Plus
3L 19911574..19912325 849..1602 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:10 Download gff for BO12670.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19903788..19904619 17..848 100 -> Plus
arm_3L 19904674..19905425 849..1602 99   Plus

BO12670.pep Sequence

Translation from 16 to 1618

> BO12670.pep
MMAHAQREIEERKRALSNLRDKDPLLASVPSIGMPVALATQALAKKPTPE
DSEKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKPLI
LDDEGRTVDKSGRTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGT
SAQEEAIKYFDDRIALKPTVRTKRTLRFHEPGKFQQLAERMRMKSQLERL
QNEISQIARKTGISSATKLALIAPKQDMPDDVPAMEWWDSVILTQDLETV
DDASGKISIRQTAITNLIEHPTQMKPPNEPLKPVYLPVFLTKKERKKLRR
QNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHV
RDQMAKRQKAHEDANNARKLTSEQKSEKKQRKLREDTSCGVHVSVYRIRD
LQDNQSKKFKVETNAKQLQMTGSVVLFRDCCVVVVEGGPKQQKKYRRLML
TRIKWEEDNAKGNDGQDVPNSCVLVWEGTSQRRHFGEIKFKIFPMEKMAR
EFFQKHQVEHYWDLAYSGAVLEASTDQQASFLDH

BO12670.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Prp3-PB 528 CG7757-PB 1..528 1..528 2686 100 Plus
Prp3-PA 598 CG7757-PA 71..598 1..528 2686 100 Plus