Clone Sequence Records
BO12670.3prime Sequence
863 bp (705 high quality bases) assembled on 2006-05-08
> BO12670.3prime
ATGGTCTAGAAAGCTTGCCTGCTGATCCGTGGAGGCCTCAAGCACGGCTC
CGGAGTAGGCCAGATCCCAGTAGTGTTCGACCTGGTGCTTCTGAAAAAAC
TCACGGGCCATTTTTTCCATTGGAAAGATCTTAAACTTGATCTCGCCAAA
GTGCCGTCGCTGACTAGTCCCCTCCCAGACGAGTACGCATGAGTTCGGCA
CGTCCTGGCCGTCATTGCCCTTGGCGTTGTCCTCCTCCCACTTAATGCGC
GTTAGCATGAGCCTGCGATACTTTTTCTGCTGCTTGGGCCCACCCTCCAC
GACAACCACACAGCAATCCCGGAACAACACCACGCTGCCGGTCATCTGCA
GCTGCTTGGCATTGGTCTCCACCTTGAATTTCTTGCTCTGGTTGTCCTGC
AGATCTCGTATGCGATAGACGCTGACATGTACACCGCAGCTGGTGTCTTC
CCTCAGCTTGCGCTGCTTCTTTTCGCTCTTCTGCTCGCTGGTCAGCTTGC
GCGCATTGTTGGCATCTTCGTGCGCCTTCTGCCGCTTGGCCATCTGGTCG
CGCACATGCTGCTCCATTTTGGTCGGATCTTGTACGGCCTCCGAGCCAAG
CACACGCATCAGGTTGGATATGCGCAGTTTCGGCTCTGGTGGGGCCACCA
AACCCAGTCGGATCTTCTCCTGCTCCTCCTTCCAGGCCTCGCGACGGTTC
TGGCGACGAAGCTTTTTGCGCTCTTTCTTTGTGAGGAAAACCGGCAGATA
CACTGGTTTCAAGGGCTCATTTGGCGGCTTCATTTGTGTGGGATGCTCTA
TAAGGTTGGTTATGGCTGTTTGGCGTATGCTTATCTTACCGCTTGCGTCG
TCTACCGTCTCCA
BO12670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7757-PA | 1797 | CG7757-RA | 950..1794 | 863..19 | 4225 | 100 | Minus |
CG7757-PB | 1587 | CG7757-RB | 740..1584 | 863..19 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp3-RB | 2082 | CG7757-RB | 1059..1903 | 863..19 | 4225 | 100 | Minus |
Prp3-RA | 2148 | CG7757-RA | 1125..1969 | 863..19 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19911574..19912325 | 770..19 | 3760 | 100 | Minus |
3L | 28110227 | 3L | 19911427..19911519 | 863..771 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:19:50 has no hits.
BO12670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:28 Download gff for
BO12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7757-PB | 741..1587 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:36 Download gff for
BO12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7757-PB | 741..1587 | 18..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:24 Download gff for
BO12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp3-RA | 1126..1969 | 19..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:21 Download gff for
BO12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp3-RA | 1126..1969 | 19..862 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:21 Download gff for
BO12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19911428..19911519 | 771..862 | 100 | -> | Minus |
3L | 19911574..19912325 | 19..770 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:24 Download gff for
BO12670.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19904528..19904619 | 771..862 | 100 | -> | Minus |
arm_3L | 19904674..19905425 | 19..770 | 100 | | Minus |
BO12670.5prime Sequence
917 bp (772 high quality bases) assembled on 2006-05-08
> BO12670.5prime
GAAGTTATCAGTCGACATGATGGCCCATGCCCAGCGGGAGATCGAGGAAC
GCAAGCGGGCCCTGAGTAATCTAAGAGACAAGGATCCGCTGCTGGCGTCA
GTTCCATCGATCGGAATGCCAGTTGCCTTAGCCACTCAAGCGCTGGCGAA
GAAGCCCACGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGCCGAGTTGC
AGGCACAGATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTTTGATTCAG
CCCACTGCGGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCGCAGGAGCG
ACCCAAACCCCTGATTCTGGACGATGAAGGACGCACTGTGGACAAGAGCG
GACGTACCATTAATATTCCCACGGTGACACCTACATTGAAAGCCAACATA
CGCGCCAAGAAACGGGAGGTGTTCCAACGCCAAACGGGTTTGGGTGAACG
GAGTGAATCGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTACTTTGACG
ACCGCATAGCCCTGAAGCCCACTGTTAGAACCAAGAGGACGTTGAGATTC
CACGAGCCCGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGCATGAAAAG
CCAGCTGGAGCGACTACAGAATGAGATTTCGCAAATAGCCCGGAAAACGG
GCATCTCGTCGGCCACCAAACTGGCATTGATTGCCCCCAAGCAGGACATG
CCGGACGATGTGCCTGCCATGGAGTGGTGGGACTCAGTTATACTGACCCA
GGATCTGGAGACGGTAGACGACGCAAGCGGTAAGATAAGCATACGCCAAA
CAGCCATAACCAAACTTATAGAGCATCCCACACAAATGAAGCCGCCAAAT
GAGCCCCTGAAACCAGTGTATCTGCCGGTTTTCCTCACAAAGAAAGAGCG
CAAAAAGCTTCCTCGCC
BO12670.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7757-PA | 1797 | CG7757-RA | 211..1111 | 17..917 | 4430 | 99.6 | Plus |
CG7757-PB | 1587 | CG7757-RB | 1..901 | 17..917 | 4430 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp3-RB | 2082 | CG7757-RB | 320..1220 | 17..917 | 4460 | 99.7 | Plus |
Prp3-RA | 2148 | CG7757-RA | 386..1286 | 17..917 | 4460 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19910688..19911519 | 17..848 | 4145 | 99.9 | Plus |
3L | 28110227 | 3L | 19911574..19911642 | 849..917 | 315 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:27:11 has no hits.
BO12670.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:29 Download gff for
BO12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7757-PB | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:37 Download gff for
BO12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7757-PB | 1..901 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:11:31 Download gff for
BO12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp3-RA | 386..1286 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:18:17 Download gff for
BO12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp3-RA | 386..1286 | 17..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:18:17 Download gff for
BO12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19910688..19911519 | 17..848 | 99 | -> | Plus |
3L | 19911574..19911642 | 849..917 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:11:31 Download gff for
BO12670.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19904674..19904742 | 849..917 | 97 | | Plus |
arm_3L | 19903788..19904619 | 17..848 | 99 | -> | Plus |
BO12670.complete Sequence
1618 bp assembled on 2008-01-17
GenBank Submission: FJ632519
> BO12670.complete
GAAGTTATCAGTCGACATGATGGCCCATGCCCAGCGGGAGATCGAGGAAC
GCAAGCGGGCCCTGAGTAATCTAAGAGACAAGGATCCGCTGCTGGCGTCA
GTTCCATCGATCGGAATGCCAGTTGCCTTAGCCACTCAAGCGCTGGCGAA
GAAGCCCACGCCCGAGGACTCGGAGAAGGCCAGGAAGATTGCCGAGTTGC
AGGCACAGATCAGGGCCAAGCTTACTGGCAATTTGGCTAGTTTGATTCAG
CCCACTGCGGTAGCGGCCGCCGCTGCAGCTGCTGCTCAAGCGCAGGAGCG
ACCCAAACCCCTGATTCTGGACGATGAAGGACGCACTGTGGACAAGAGCG
GACGTACCATTAATATTCCCACGGTGACACCTACATTGAAAGCCAACATA
CGCGCCAAGAAACGGGAGGTGTTCCAACGCCAAACGGGTTTGGGTGAACG
GAGTGAATCGGGCACTTCGGCCCAGGAAGAAGCTATTAAGTACTTTGACG
ACCGCATAGCCCTGAAGCCCACTGTTAGAACCAAGAGGACGTTGAGATTC
CACGAGCCCGGAAAGTTCCAGCAGCTGGCCGAACGAATGCGCATGAAAAG
CCAGCTGGAGCGACTACAGAATGAGATTTCGCAAATAGCCCGGAAAACGG
GCATCTCGTCGGCCACCAAACTGGCATTGATTGCCCCCAAGCAGGACATG
CCGGACGATGTGCCTGCCATGGAGTGGTGGGACTCAGTTATACTGACCCA
GGATCTGGAGACGGTAGACGACGCAAGCGGTAAGATAAGCATACGCCAAA
CAGCCATAACCAACCTTATAGAGCATCCCACACAAATGAAGCCGCCAAAT
GAGCCCTTGAAACCAGTGTATCTGCCGGTTTTCCTCACAAAGAAAGAGCG
CAAAAAGCTTCGTCGCCAGAACCGTCGCGAGGCCTGGAAGGAGGAGCAGG
AGAAGATCCGACTGGGTTTGGTGGCCCCACCAGAGCCGAAACTGCGCATA
TCCAACCTGATGCGTGTGCTTGGCTCGGAGGCCGTACAAGATCCGACCAA
AATGGAGCAGCATGTGCGCGACCAGATGGCCAAGCGGCAGAAGGCGCACG
AAGATGCCAACAATGCGCGCAAGCTGACCAGCGAGCAGAAGAGCGAAAAG
AAGCAGCGCAAGCTGAGGGAAGACACCAGCTGCGGTGTACATGTCAGCGT
CTATCGCATACGAGATCTGCAGGACAACCAGAGCAAGAAATTCAAGGTGG
AGACCAATGCCAAGCAGCTGCAGATGACCGGCAGCGTGGTGTTGTTCCGG
GATTGCTGTGTGGTTGTCGTGGAGGGTGGGCCCAAGCAGCAGAAAAAGTA
TCGCAGGCTCATGCTAACGCGCATTAAGTGGGAGGAGGACAACGCCAAGG
GCAATGACGGCCAGGACGTGCCGAACTCATGCGTACTCGTCTGGGAGGGG
ACTAGTCAGCGACGGCACTTTGGCGAGATCAAGTTTAAGATCTTTCCAAT
GGAAAAAATGGCCCGTGAGTTTTTTCAGAAGCACCAGGTCGAACACTACT
GGGATCTGGCCTACTCCGGAGCCGTGCTTGAGGCCTCCACGGATCAGCAG
GCAAGCTTTCTAGACCAT
BO12670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp3-RB | 1587 | CG7757-PB | 1..1584 | 17..1600 | 7920 | 100 | Plus |
Prp3-RA | 1797 | CG7757-PA | 211..1794 | 17..1600 | 7920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp3-RB | 2082 | CG7757-RB | 320..1903 | 17..1600 | 7920 | 100 | Plus |
Prp3-RA | 2148 | CG7757-RA | 386..1969 | 17..1600 | 7920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19910688..19911519 | 17..848 | 4160 | 100 | Plus |
3L | 28110227 | 3L | 19911574..19912325 | 849..1600 | 3760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:05:38 has no hits.
BO12670.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:47 Download gff for
BO12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7757-RB | 1..1587 | 17..1601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:55 Download gff for
BO12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7757-RB | 275..1858 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:10 Download gff for
BO12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp3-RA | 386..1969 | 17..1602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:47 Download gff for
BO12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7757-RB | 275..1858 | 17..1600 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:15 Download gff for
BO12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp3-RA | 386..1969 | 17..1602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:15 Download gff for
BO12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19910688..19911519 | 17..848 | 100 | -> | Plus |
3L | 19911574..19912325 | 849..1602 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:10 Download gff for
BO12670.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19903788..19904619 | 17..848 | 100 | -> | Plus |
arm_3L | 19904674..19905425 | 849..1602 | 99 | | Plus |
BO12670.pep Sequence
Translation from 16 to 1618
> BO12670.pep
MMAHAQREIEERKRALSNLRDKDPLLASVPSIGMPVALATQALAKKPTPE
DSEKARKIAELQAQIRAKLTGNLASLIQPTAVAAAAAAAAQAQERPKPLI
LDDEGRTVDKSGRTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGT
SAQEEAIKYFDDRIALKPTVRTKRTLRFHEPGKFQQLAERMRMKSQLERL
QNEISQIARKTGISSATKLALIAPKQDMPDDVPAMEWWDSVILTQDLETV
DDASGKISIRQTAITNLIEHPTQMKPPNEPLKPVYLPVFLTKKERKKLRR
QNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHV
RDQMAKRQKAHEDANNARKLTSEQKSEKKQRKLREDTSCGVHVSVYRIRD
LQDNQSKKFKVETNAKQLQMTGSVVLFRDCCVVVVEGGPKQQKKYRRLML
TRIKWEEDNAKGNDGQDVPNSCVLVWEGTSQRRHFGEIKFKIFPMEKMAR
EFFQKHQVEHYWDLAYSGAVLEASTDQQASFLDH
BO12670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp3-PB | 528 | CG7757-PB | 1..528 | 1..528 | 2686 | 100 | Plus |
Prp3-PA | 598 | CG7757-PA | 71..598 | 1..528 | 2686 | 100 | Plus |