Clone BO12676 Report

Search the DGRC for BO12676

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptMarcal1-RA
Protein status:BO12676.pep:
Sequenced Size:2299

Clone Sequence Records

BO12676.3prime Sequence

830 bp (701 high quality bases) assembled on 2006-05-08

> BO12676.3prime
ATGGTCTAGAAAGCTTGCAATATCTAATTCCAAAAAAGCCTCATCATCAT
CATCGTTAAAGAACGCCGCGATATCCGACTCAGCCTTGTTTACTTTGGTC
ATTTCTGTATTATTATTTTGCTCAGGCGGCTCTTTAGCTGGAATAGTTGA
AAAATATTGTTTTATGCTATTCCTTTCCGGTTCAAGGGAGGTGGACGTGG
AGGGCGAGAAGTACTCCTCGATCTTGTGGGATGAAGTGGGTGCTGCTGTG
TGTGTTGCTTTCTGAAGATTTTCGGCAAAGATGCCCACTTTACTAAGCAC
CTCTTGCTTATTTTTCAGCATGTTCCAGATTATATCGTCTGCCGTATTGT
GAGCAATCAGATAGCGACAAATCACCGGTTTTGTCTGACCAATGCGATGG
GCACGGCTCTCCGCCTGGGCAAGAGTGCTAGGATTCCAGTCCAGTTCAGC
GAACACTATGATCTCAGCTGCAGTTAGCGTTATTCCTGAATTGCAGGCTT
TTAGGGAGAGCAGGGCCACCTTACAACTGCTCTTCTTTTGGAACGTGTCC
ACAGAATCCGACCTGTGATCGCTACGCGTTTGTCCATCAATACGTATGTA
GTGTACTTTCAATCCACTGAGGAAGTCGCTAATGGCGTCCATCATGACAC
GATGGTGGGCAAAGATAATGAACTTTTTCTGCTCCTTAACTAAGGTTTTT
AGGTAGGCGCAGACCGCTCGAGTTTTCACTTCGGCAGTGCGTGCATAGAA
ACGGATTAAGATCTCTTCCGTTGCCCTGCCTTAAGCGGTTTTAGCTCTTT
GTTAAACGCATCCCAGGTTCCCTTGGTCTC

BO12676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3753-PA 2268 Marcal1-RA 1491..2265 793..19 3825 99.7 Minus
CG3753-PA 2268 Marcal1-RA 1453..1490 830..793 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:57
Subject Length Description Subject Range Query Range Score Percent Strand
Marcal1-RA 2411 CG3753-RA 1527..2339 830..19 3980 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4957407..4957690 710..427 1420 100 Minus
2L 23513712 2L 4958008..4958220 231..19 1065 100 Minus
2L 23513712 2L 4957752..4957946 426..232 975 100 Minus
2L 23513712 2L 4957221..4957342 830..710 500 95.9 Minus
Blast to na_te.dros performed on 2015-02-11 10:25:54 has no hits.

BO12676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:38 Download gff for BO12676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3753-PA 1453..2268 18..830 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:50 Download gff for BO12676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3753-PA 1453..2268 18..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:34 Download gff for BO12676.3prime
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 1527..2345 11..830 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:35 Download gff for BO12676.3prime
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 1527..2345 11..830 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:35 Download gff for BO12676.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4957221..4957342 710..830 95 -> Minus
2L 4957408..4957690 427..709 100 -> Minus
2L 4957752..4957946 232..426 100 -> Minus
2L 4958008..4958226 11..231 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:34 Download gff for BO12676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4957221..4957342 710..830 95 -> Minus
arm_2L 4957408..4957690 427..709 100 -> Minus
arm_2L 4957752..4957946 232..426 100 -> Minus
arm_2L 4958008..4958226 11..231 98   Minus

BO12676.5prime Sequence

696 bp (694 high quality bases) assembled on 2006-05-08

> BO12676.5prime
GAAGTTATCAGTCGACATGTCCACTTGCAGTTCATCCGAGATAGCGGAGA
AGAAGCGCATTGCGCTGGCCAAATTGCAGGCCAAGAAATCCCAGCTGCTG
GCCAGCGCACCCGCAACCAATGGAAAATCAACAACGTCTGCAACAGGTGC
GACGCAACATGCGAATAATGGAAAATCAAATCCCAATCAACCGCAGGCCA
AATCCCCATTGAATTTCTACCGATCACCGACGGGGGAGCAGAAGAAGATC
AACAGGAGCGGTCCCACGCCCGGTGACAACAAGAGCTCATCCTTTCTGAA
CGCTCTGAAAGCAATCAAACAGACATCCAACCGGGAATTGTCCCGCGGAG
CAGCACATCCTTACCAGCGGCCAAATGGAGGGAACGAAAGAAACAAGCCC
ACTCTTTCACTGAGTTCGGATAAGGAGAAACCGGTGGCTGTGCTACTCGG
AAACTCCATCACGTGTAATCTCTACTTGATCAGCACACATCGGTTTGCTG
CCCAAACCTCAGGATATCACGAACAGCTCGTGACCGTGTTCAAGAACATG
CCCACCAAGTGCTACGATGGCCAGACCCGTATCTGGAGTTTCGATCTGTC
GGACTACCAATCCCTGAAAACTCATGCAGCGGATCTAAAGCCATATGTTC
ACATGAATGGCATTCCGAAGAAGGTGCTGGATCTCTGCGGCCAGCC

BO12676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3753-PA 2268 Marcal1-RA 1..680 17..696 3375 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Marcal1-RA 2411 CG3753-RA 74..754 16..696 3390 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:17:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4955582..4956262 16..696 3390 99.9 Plus
Blast to na_te.dros performed on 2015-02-04 03:18:01 has no hits.

BO12676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:38 Download gff for BO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3753-PA 1..680 17..696 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:51 Download gff for BO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3753-PA 1..680 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:17 Download gff for BO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 65..754 7..696 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:11 Download gff for BO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 65..754 7..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:11 Download gff for BO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4955573..4956262 7..696 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:17 Download gff for BO12676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4955573..4956262 7..696 99   Plus

BO12676.complete Sequence

2299 bp assembled on 2008-01-17

GenBank Submission: FJ632520

> BO12676.complete
GAAGTTATCAGTCGACATGTCCACTTGCAGTTCATCCGAGATAGCGGAGA
AGAAGCGCATTGCGCTGGCCAAATTGCAGGCCAAGAAATCCCAGCTGCTG
GCCAGCGCACCCGCAACCAATGGAAAATCAACAACGTCTGCAACAGGTGC
GACGCAACATGCGAATAATGGAAAATCAAATCCCAATCAACCGCAGGCCA
AATCCCCATTGAATTTCTACCGATCACCGACGGGGGAGCAGAAGAAGATC
AACAGGAGCGGTCCCACGCCCGGTGACAACAAGAGCTCATCCTTTCTGAA
CGCTCTGAAAGCAATCAAACAGACATCCAACCGGGAATTGTCCCGCGGAG
CAGCACATCCTTACCAGCGGCCAAATGGAGGGAACGAAAGAAACAAGCCC
ACTCTTTCACTGAGTTCGGATAAGGAGAAACCGGTGGCTGTGCTACTCGG
AAACTCCATCACGTGTAATCTCTACTTGATCAGCACACATCGGTTTGCTG
CCCAAACCTCAGGATATCACGAACAGCTCGTGACCGTGTTCAAGAACATG
CCCACCAAGTGCTACGATGGCCAGACCCGTATCTGGAGTTTCGATCTGTC
GGACTACCAATCCCTGAAAACTCATGCAGCGGATCTAAAGCCATATGTTC
ACATGAATGGCATTCCGAAGAAGGTGCTGGATCTCTGCGGCCAGCCGCCA
GTAGTTCCGGAAAGAAGTGTTTTAGCTTCCATAGAACCGAAGCTGGCGGA
CCAGCTAATGCCCTTCCAACAGGATGGGGTATGCTTTGCCATAGCCCAAA
AGGGACGCATTATGATCTGTGATGAAATGGGCCTGGGCAAAACCTATCAG
GCCTTGGCCGTAGCCGACTATTTCAAGGATGATTGGCCCTTGCTTGTCTG
CACCACCGCTTCTACGAGAGACAGTTGGGCGAAACACATAATGGATCTAC
TGCCGAAGGTGCCCATCCACTATGTCCAGGTGCTGAACAACAATCAGCTA
TATGTGGGTGAGGCCAAGGTGCTAATCACCAGCTACAATATGATGGAGCG
ACACGAAGATAAGCTGATGCAGCGGAAGTTTGGTTTCATCATCTTCGACG
AGTCGCACACGCTGAAGAACAGCAAGGCCAAGTGCACGACAACGGCCAAA
AGACTCACGGATCAGGCGAAGCGGGTGGTTTTGCTATCCGGCACACCGGC
TCTCTCCCGGCCATTGGAACTTTTTACGCAACTGCAAATGATTGATGGCA
AATTCATGAATTTCATGGAGTTCACTACTCGTTATTGTGATGGAAAGCAG
TCAACTTTTGGTTGGGATGCCAATGGTCAATCGAATTTGGAGGAACTGAA
GGTCATACTTCACCTTAAATATATGCTGAGGCGAACGAAAGTGGAGGTGC
TGCCTCAACTCGCTGAGAAGAACCGTGAGACTGTCGTCCTGGATCCCGCC
CTAGTGTGGACCAATGCGGAGACCAAGGAAACCTTGGATGCGTTTAACAA
AGAGCTTAAAACCGCTAAAGGCAGGGCAACGGAAGAGATCTTACTCCGTT
TCTATGCACGCACTGCCGAAGTGAAAACTCGAGCGGTCTGCGCCTACCTA
AAAACCTTAGTTAAGGAGCAGAAAAAGTTCATTATCTTTGCCCACCATCG
TGTCATGATGGACGCCATTAGCGACTTCCTCAGTGGATTGAAAGTACACT
ACATACGTATTGATGGACAAACGCGTAGCGATCACAGGTCGGATTCTGTG
GACACGTTCCAAAAGAAGAGCAGTTGTAAGGTGGCCCTGCTCTCCCTAAA
AGCCTGCAATTCAGGAATAACGCTAACTGCAGCTGAGATCATAGTGTTCG
CTGAACTGGACTGGAATCCTAGCACTCTTGCCCAGGCGGAGAGCCGTGCC
CATCGCATTGGTCAGACAAAACCGGTGATTTGTCGCTATCTGATTGCTCA
CAATACGGCAGACGATATAATCTGGAACATGCTGAAAAATAAGCAAGAGG
TGCTTAGTAAAGTGGGCATCTTTGCCGAAAATCTTCAGAAAGCAACACAC
ACAGCAGCACCCACTTCATCCCACAAGATCGAGGAGTACTTCTCGCCCTC
CACGTCCACCTCCCTTGAACCGGAAAGGAATAGCATAAAACAATATTTTT
CAACTATTCCAGCTAAAGAGCCGCCTGAGCAAAATAATAATACAGAAATG
ACCAAAGTAAACAAGGCTGAGTCGGATATCGCGGCGTTCTTTAACGATGA
TGATGATGAGGCTTTTTTGGAATTAGATATTGCAAGCTTTCTAGACCAT

BO12676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
Marcal1-RA 2268 CG3753-PA 1..2265 17..2281 11310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Marcal1-RA 2411 CG3753-RA 74..2339 16..2281 11315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4955582..4956349 16..783 3825 99.9 Plus
2L 23513712 2L 4956407..4956898 783..1274 2460 100 Plus
2L 23513712 2L 4957407..4957690 1590..1873 1420 100 Plus
2L 23513712 2L 4958008..4958220 2069..2281 1065 100 Plus
2L 23513712 2L 4957752..4957946 1874..2068 975 100 Plus
2L 23513712 2L 4957177..4957342 1425..1590 830 100 Plus
2L 23513712 2L 4956958..4957108 1275..1425 755 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:22:15 has no hits.

BO12676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:48 Download gff for BO12676.complete
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 1..2268 17..2282 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:31 Download gff for BO12676.complete
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 65..2329 17..2283 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:52 Download gff for BO12676.complete
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 75..2339 17..2283 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:48 Download gff for BO12676.complete
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 55..2335 7..2289 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:57 Download gff for BO12676.complete
Subject Subject Range Query Range Percent Splice Strand
Marcal1-RA 75..2339 17..2283 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:57 Download gff for BO12676.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4958008..4958220 2069..2283 99   Plus
2L 4955583..4956349 17..783 99 -> Plus
2L 4956408..4956898 784..1274 100 -> Plus
2L 4956958..4957108 1275..1425 100 -> Plus
2L 4957178..4957342 1426..1590 100 -> Plus
2L 4957408..4957690 1591..1873 100 -> Plus
2L 4957752..4957946 1874..2068 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:52 Download gff for BO12676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4955583..4956349 17..783 99 -> Plus
arm_2L 4956408..4956898 784..1274 100 -> Plus
arm_2L 4956958..4957108 1275..1425 100 -> Plus
arm_2L 4957178..4957342 1426..1590 100 -> Plus
arm_2L 4957408..4957690 1591..1873 100 -> Plus
arm_2L 4957752..4957946 1874..2068 100 -> Plus
arm_2L 4958008..4958220 2069..2283 99   Plus

BO12676.pep Sequence

Translation from 16 to 2299

> BO12676.pep
MSTCSSSEIAEKKRIALAKLQAKKSQLLASAPATNGKSTTSATGATQHAN
NGKSNPNQPQAKSPLNFYRSPTGEQKKINRSGPTPGDNKSSSFLNALKAI
KQTSNRELSRGAAHPYQRPNGGNERNKPTLSLSSDKEKPVAVLLGNSITC
NLYLISTHRFAAQTSGYHEQLVTVFKNMPTKCYDGQTRIWSFDLSDYQSL
KTHAADLKPYVHMNGIPKKVLDLCGQPPVVPERSVLASIEPKLADQLMPF
QQDGVCFAIAQKGRIMICDEMGLGKTYQALAVADYFKDDWPLLVCTTAST
RDSWAKHIMDLLPKVPIHYVQVLNNNQLYVGEAKVLITSYNMMERHEDKL
MQRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPL
ELFTQLQMIDGKFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVILHL
KYMLRRTKVEVLPQLAEKNRETVVLDPALVWTNAETKETLDAFNKELKTA
KGRATEEILLRFYARTAEVKTRAVCAYLKTLVKEQKKFIIFAHHRVMMDA
ISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVALLSLKACNSG
ITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHNTADD
IIWNMLKNKQEVLSKVGIFAENLQKATHTAAPTSSHKIEEYFSPSTSTSL
EPERNSIKQYFSTIPAKEPPEQNNNTEMTKVNKAESDIAAFFNDDDDEAF
LELDIASFLDH

BO12676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Marcal1-PA 755 CG3753-PA 1..755 1..755 3901 100 Plus
Iswi-PC 1027 CG8625-PC 150..565 266..652 309 25.3 Plus
Iswi-PB 1027 CG8625-PB 150..565 266..652 309 25.3 Plus
Iswi-PA 1027 CG8625-PA 150..565 266..652 309 25.3 Plus
Chd3-PA 892 CG9594-PA 266..727 246..659 294 25.3 Plus