Clone Sequence Records
BO12676.3prime Sequence
830 bp (701 high quality bases) assembled on 2006-05-08
> BO12676.3prime
ATGGTCTAGAAAGCTTGCAATATCTAATTCCAAAAAAGCCTCATCATCAT
CATCGTTAAAGAACGCCGCGATATCCGACTCAGCCTTGTTTACTTTGGTC
ATTTCTGTATTATTATTTTGCTCAGGCGGCTCTTTAGCTGGAATAGTTGA
AAAATATTGTTTTATGCTATTCCTTTCCGGTTCAAGGGAGGTGGACGTGG
AGGGCGAGAAGTACTCCTCGATCTTGTGGGATGAAGTGGGTGCTGCTGTG
TGTGTTGCTTTCTGAAGATTTTCGGCAAAGATGCCCACTTTACTAAGCAC
CTCTTGCTTATTTTTCAGCATGTTCCAGATTATATCGTCTGCCGTATTGT
GAGCAATCAGATAGCGACAAATCACCGGTTTTGTCTGACCAATGCGATGG
GCACGGCTCTCCGCCTGGGCAAGAGTGCTAGGATTCCAGTCCAGTTCAGC
GAACACTATGATCTCAGCTGCAGTTAGCGTTATTCCTGAATTGCAGGCTT
TTAGGGAGAGCAGGGCCACCTTACAACTGCTCTTCTTTTGGAACGTGTCC
ACAGAATCCGACCTGTGATCGCTACGCGTTTGTCCATCAATACGTATGTA
GTGTACTTTCAATCCACTGAGGAAGTCGCTAATGGCGTCCATCATGACAC
GATGGTGGGCAAAGATAATGAACTTTTTCTGCTCCTTAACTAAGGTTTTT
AGGTAGGCGCAGACCGCTCGAGTTTTCACTTCGGCAGTGCGTGCATAGAA
ACGGATTAAGATCTCTTCCGTTGCCCTGCCTTAAGCGGTTTTAGCTCTTT
GTTAAACGCATCCCAGGTTCCCTTGGTCTC
BO12676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3753-PA | 2268 | Marcal1-RA | 1491..2265 | 793..19 | 3825 | 99.7 | Minus |
CG3753-PA | 2268 | Marcal1-RA | 1453..1490 | 830..793 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:25:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marcal1-RA | 2411 | CG3753-RA | 1527..2339 | 830..19 | 3980 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4957407..4957690 | 710..427 | 1420 | 100 | Minus |
2L | 23513712 | 2L | 4958008..4958220 | 231..19 | 1065 | 100 | Minus |
2L | 23513712 | 2L | 4957752..4957946 | 426..232 | 975 | 100 | Minus |
2L | 23513712 | 2L | 4957221..4957342 | 830..710 | 500 | 95.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:25:54 has no hits.
BO12676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:38 Download gff for
BO12676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3753-PA | 1453..2268 | 18..830 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:50 Download gff for
BO12676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3753-PA | 1453..2268 | 18..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:34 Download gff for
BO12676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 1527..2345 | 11..830 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:35 Download gff for
BO12676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 1527..2345 | 11..830 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:35 Download gff for
BO12676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4957221..4957342 | 710..830 | 95 | -> | Minus |
2L | 4957408..4957690 | 427..709 | 100 | -> | Minus |
2L | 4957752..4957946 | 232..426 | 100 | -> | Minus |
2L | 4958008..4958226 | 11..231 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:34 Download gff for
BO12676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4957221..4957342 | 710..830 | 95 | -> | Minus |
arm_2L | 4957408..4957690 | 427..709 | 100 | -> | Minus |
arm_2L | 4957752..4957946 | 232..426 | 100 | -> | Minus |
arm_2L | 4958008..4958226 | 11..231 | 98 | | Minus |
BO12676.5prime Sequence
696 bp (694 high quality bases) assembled on 2006-05-08
> BO12676.5prime
GAAGTTATCAGTCGACATGTCCACTTGCAGTTCATCCGAGATAGCGGAGA
AGAAGCGCATTGCGCTGGCCAAATTGCAGGCCAAGAAATCCCAGCTGCTG
GCCAGCGCACCCGCAACCAATGGAAAATCAACAACGTCTGCAACAGGTGC
GACGCAACATGCGAATAATGGAAAATCAAATCCCAATCAACCGCAGGCCA
AATCCCCATTGAATTTCTACCGATCACCGACGGGGGAGCAGAAGAAGATC
AACAGGAGCGGTCCCACGCCCGGTGACAACAAGAGCTCATCCTTTCTGAA
CGCTCTGAAAGCAATCAAACAGACATCCAACCGGGAATTGTCCCGCGGAG
CAGCACATCCTTACCAGCGGCCAAATGGAGGGAACGAAAGAAACAAGCCC
ACTCTTTCACTGAGTTCGGATAAGGAGAAACCGGTGGCTGTGCTACTCGG
AAACTCCATCACGTGTAATCTCTACTTGATCAGCACACATCGGTTTGCTG
CCCAAACCTCAGGATATCACGAACAGCTCGTGACCGTGTTCAAGAACATG
CCCACCAAGTGCTACGATGGCCAGACCCGTATCTGGAGTTTCGATCTGTC
GGACTACCAATCCCTGAAAACTCATGCAGCGGATCTAAAGCCATATGTTC
ACATGAATGGCATTCCGAAGAAGGTGCTGGATCTCTGCGGCCAGCC
BO12676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3753-PA | 2268 | Marcal1-RA | 1..680 | 17..696 | 3375 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marcal1-RA | 2411 | CG3753-RA | 74..754 | 16..696 | 3390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:17:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4955582..4956262 | 16..696 | 3390 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:18:01 has no hits.
BO12676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:38 Download gff for
BO12676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3753-PA | 1..680 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:20:51 Download gff for
BO12676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3753-PA | 1..680 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:52:17 Download gff for
BO12676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 65..754 | 7..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:11 Download gff for
BO12676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 65..754 | 7..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:11 Download gff for
BO12676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4955573..4956262 | 7..696 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:52:17 Download gff for
BO12676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4955573..4956262 | 7..696 | 99 | | Plus |
BO12676.complete Sequence
2299 bp assembled on 2008-01-17
GenBank Submission: FJ632520
> BO12676.complete
GAAGTTATCAGTCGACATGTCCACTTGCAGTTCATCCGAGATAGCGGAGA
AGAAGCGCATTGCGCTGGCCAAATTGCAGGCCAAGAAATCCCAGCTGCTG
GCCAGCGCACCCGCAACCAATGGAAAATCAACAACGTCTGCAACAGGTGC
GACGCAACATGCGAATAATGGAAAATCAAATCCCAATCAACCGCAGGCCA
AATCCCCATTGAATTTCTACCGATCACCGACGGGGGAGCAGAAGAAGATC
AACAGGAGCGGTCCCACGCCCGGTGACAACAAGAGCTCATCCTTTCTGAA
CGCTCTGAAAGCAATCAAACAGACATCCAACCGGGAATTGTCCCGCGGAG
CAGCACATCCTTACCAGCGGCCAAATGGAGGGAACGAAAGAAACAAGCCC
ACTCTTTCACTGAGTTCGGATAAGGAGAAACCGGTGGCTGTGCTACTCGG
AAACTCCATCACGTGTAATCTCTACTTGATCAGCACACATCGGTTTGCTG
CCCAAACCTCAGGATATCACGAACAGCTCGTGACCGTGTTCAAGAACATG
CCCACCAAGTGCTACGATGGCCAGACCCGTATCTGGAGTTTCGATCTGTC
GGACTACCAATCCCTGAAAACTCATGCAGCGGATCTAAAGCCATATGTTC
ACATGAATGGCATTCCGAAGAAGGTGCTGGATCTCTGCGGCCAGCCGCCA
GTAGTTCCGGAAAGAAGTGTTTTAGCTTCCATAGAACCGAAGCTGGCGGA
CCAGCTAATGCCCTTCCAACAGGATGGGGTATGCTTTGCCATAGCCCAAA
AGGGACGCATTATGATCTGTGATGAAATGGGCCTGGGCAAAACCTATCAG
GCCTTGGCCGTAGCCGACTATTTCAAGGATGATTGGCCCTTGCTTGTCTG
CACCACCGCTTCTACGAGAGACAGTTGGGCGAAACACATAATGGATCTAC
TGCCGAAGGTGCCCATCCACTATGTCCAGGTGCTGAACAACAATCAGCTA
TATGTGGGTGAGGCCAAGGTGCTAATCACCAGCTACAATATGATGGAGCG
ACACGAAGATAAGCTGATGCAGCGGAAGTTTGGTTTCATCATCTTCGACG
AGTCGCACACGCTGAAGAACAGCAAGGCCAAGTGCACGACAACGGCCAAA
AGACTCACGGATCAGGCGAAGCGGGTGGTTTTGCTATCCGGCACACCGGC
TCTCTCCCGGCCATTGGAACTTTTTACGCAACTGCAAATGATTGATGGCA
AATTCATGAATTTCATGGAGTTCACTACTCGTTATTGTGATGGAAAGCAG
TCAACTTTTGGTTGGGATGCCAATGGTCAATCGAATTTGGAGGAACTGAA
GGTCATACTTCACCTTAAATATATGCTGAGGCGAACGAAAGTGGAGGTGC
TGCCTCAACTCGCTGAGAAGAACCGTGAGACTGTCGTCCTGGATCCCGCC
CTAGTGTGGACCAATGCGGAGACCAAGGAAACCTTGGATGCGTTTAACAA
AGAGCTTAAAACCGCTAAAGGCAGGGCAACGGAAGAGATCTTACTCCGTT
TCTATGCACGCACTGCCGAAGTGAAAACTCGAGCGGTCTGCGCCTACCTA
AAAACCTTAGTTAAGGAGCAGAAAAAGTTCATTATCTTTGCCCACCATCG
TGTCATGATGGACGCCATTAGCGACTTCCTCAGTGGATTGAAAGTACACT
ACATACGTATTGATGGACAAACGCGTAGCGATCACAGGTCGGATTCTGTG
GACACGTTCCAAAAGAAGAGCAGTTGTAAGGTGGCCCTGCTCTCCCTAAA
AGCCTGCAATTCAGGAATAACGCTAACTGCAGCTGAGATCATAGTGTTCG
CTGAACTGGACTGGAATCCTAGCACTCTTGCCCAGGCGGAGAGCCGTGCC
CATCGCATTGGTCAGACAAAACCGGTGATTTGTCGCTATCTGATTGCTCA
CAATACGGCAGACGATATAATCTGGAACATGCTGAAAAATAAGCAAGAGG
TGCTTAGTAAAGTGGGCATCTTTGCCGAAAATCTTCAGAAAGCAACACAC
ACAGCAGCACCCACTTCATCCCACAAGATCGAGGAGTACTTCTCGCCCTC
CACGTCCACCTCCCTTGAACCGGAAAGGAATAGCATAAAACAATATTTTT
CAACTATTCCAGCTAAAGAGCCGCCTGAGCAAAATAATAATACAGAAATG
ACCAAAGTAAACAAGGCTGAGTCGGATATCGCGGCGTTCTTTAACGATGA
TGATGATGAGGCTTTTTTGGAATTAGATATTGCAAGCTTTCTAGACCAT
BO12676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marcal1-RA | 2268 | CG3753-PA | 1..2265 | 17..2281 | 11310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marcal1-RA | 2411 | CG3753-RA | 74..2339 | 16..2281 | 11315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4955582..4956349 | 16..783 | 3825 | 99.9 | Plus |
2L | 23513712 | 2L | 4956407..4956898 | 783..1274 | 2460 | 100 | Plus |
2L | 23513712 | 2L | 4957407..4957690 | 1590..1873 | 1420 | 100 | Plus |
2L | 23513712 | 2L | 4958008..4958220 | 2069..2281 | 1065 | 100 | Plus |
2L | 23513712 | 2L | 4957752..4957946 | 1874..2068 | 975 | 100 | Plus |
2L | 23513712 | 2L | 4957177..4957342 | 1425..1590 | 830 | 100 | Plus |
2L | 23513712 | 2L | 4956958..4957108 | 1275..1425 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:22:15 has no hits.
BO12676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:48 Download gff for
BO12676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 1..2268 | 17..2282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:29:31 Download gff for
BO12676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 65..2329 | 17..2283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:52 Download gff for
BO12676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 75..2339 | 17..2283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:48 Download gff for
BO12676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 55..2335 | 7..2289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:57 Download gff for
BO12676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marcal1-RA | 75..2339 | 17..2283 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:57 Download gff for
BO12676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4958008..4958220 | 2069..2283 | 99 | | Plus |
2L | 4955583..4956349 | 17..783 | 99 | -> | Plus |
2L | 4956408..4956898 | 784..1274 | 100 | -> | Plus |
2L | 4956958..4957108 | 1275..1425 | 100 | -> | Plus |
2L | 4957178..4957342 | 1426..1590 | 100 | -> | Plus |
2L | 4957408..4957690 | 1591..1873 | 100 | -> | Plus |
2L | 4957752..4957946 | 1874..2068 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:52 Download gff for
BO12676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4955583..4956349 | 17..783 | 99 | -> | Plus |
arm_2L | 4956408..4956898 | 784..1274 | 100 | -> | Plus |
arm_2L | 4956958..4957108 | 1275..1425 | 100 | -> | Plus |
arm_2L | 4957178..4957342 | 1426..1590 | 100 | -> | Plus |
arm_2L | 4957408..4957690 | 1591..1873 | 100 | -> | Plus |
arm_2L | 4957752..4957946 | 1874..2068 | 100 | -> | Plus |
arm_2L | 4958008..4958220 | 2069..2283 | 99 | | Plus |
BO12676.pep Sequence
Translation from 16 to 2299
> BO12676.pep
MSTCSSSEIAEKKRIALAKLQAKKSQLLASAPATNGKSTTSATGATQHAN
NGKSNPNQPQAKSPLNFYRSPTGEQKKINRSGPTPGDNKSSSFLNALKAI
KQTSNRELSRGAAHPYQRPNGGNERNKPTLSLSSDKEKPVAVLLGNSITC
NLYLISTHRFAAQTSGYHEQLVTVFKNMPTKCYDGQTRIWSFDLSDYQSL
KTHAADLKPYVHMNGIPKKVLDLCGQPPVVPERSVLASIEPKLADQLMPF
QQDGVCFAIAQKGRIMICDEMGLGKTYQALAVADYFKDDWPLLVCTTAST
RDSWAKHIMDLLPKVPIHYVQVLNNNQLYVGEAKVLITSYNMMERHEDKL
MQRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLLSGTPALSRPL
ELFTQLQMIDGKFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVILHL
KYMLRRTKVEVLPQLAEKNRETVVLDPALVWTNAETKETLDAFNKELKTA
KGRATEEILLRFYARTAEVKTRAVCAYLKTLVKEQKKFIIFAHHRVMMDA
ISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCKVALLSLKACNSG
ITLTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHNTADD
IIWNMLKNKQEVLSKVGIFAENLQKATHTAAPTSSHKIEEYFSPSTSTSL
EPERNSIKQYFSTIPAKEPPEQNNNTEMTKVNKAESDIAAFFNDDDDEAF
LELDIASFLDH
BO12676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marcal1-PA | 755 | CG3753-PA | 1..755 | 1..755 | 3901 | 100 | Plus |
Iswi-PC | 1027 | CG8625-PC | 150..565 | 266..652 | 309 | 25.3 | Plus |
Iswi-PB | 1027 | CG8625-PB | 150..565 | 266..652 | 309 | 25.3 | Plus |
Iswi-PA | 1027 | CG8625-PA | 150..565 | 266..652 | 309 | 25.3 | Plus |
Chd3-PA | 892 | CG9594-PA | 266..727 | 246..659 | 294 | 25.3 | Plus |