Clone Sequence Records
BO12681.3prime Sequence
765 bp (647 high quality bases) assembled on 2006-05-08
> BO12681.3prime
ATGGTCTAGAAAGCTTGCAATCTCATTGTTAGTTTCTCGCGCATCGTAGG
CTTTACTGTAATCCAAAACCAAATCGTTAATCACTCTCTTGACCTCCGTG
GCGAAGATAAAGTCCAAGTGACCCCATGTGGAATCGGGCACCTCGTGAAG
CAGTGCCAAATTGGGCAGAAGATCGGGCAGACGGGAGATGTCCTGCTTAT
TGGCCGATCCATCAGCCAAGCCATAGTATAAGTACAGCTCGGAGGTGATC
TTGGTGAGATCATATGCCGGAGGCTCTGACACGCCGTAGTATTCCAGGTT
TCTCTTGCTGCCCCAATCGTACAAACGGAAATCGTTGGAGGCGTAGGACT
GAATGTAGTGAATGGCCTGGTTTGAGGAGACTCCAGCGGGATGGGTTTCG
GCAATTTGCGGGAGCAGAGTCTGGTTAAGGTTGCCGATTTCGGGACCTCC
CCAGAGGATGGCCAAGGTTTTGCAGTAGCTGAGCATGATCGGCTGATTGC
TGCATGTGGTGTCCAGTACTCGCTGGATGAACGCGTTCTGGGGCAGCAAA
ACCTGGTTTTCCAGCAACGTGGAGCCAATGCCATGGTGACCAAACAGCGG
AGCTGTGCTCACAATGAGTCCCTCTGTGGAATTGCCCATGTAAACGGGCG
GTGCGAAGCTGTGCGCCGTCTTGGATCTTGGATTGTACTCCGGCCGGTAA
GAACCCATCACGAAGAAAGAAGTGCATTCCCTGGGAATGGCCAACTAATG
CACCAACTGGTGAAC
BO12681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2772-PA | 1251 | CG2772-RA | 611..1248 | 656..19 | 3115 | 99.5 | Minus |
CG2772-PA | 1251 | CG2772-RA | 540..585 | 727..682 | 180 | 95.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2772-RA | 1338 | CG2772-RA | 550..1294 | 763..19 | 3440 | 97.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3447141..3447545 | 423..19 | 2025 | 100 | Minus |
2L | 23513712 | 2L | 3446769..3447089 | 742..421 | 1350 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:52:22 has no hits.
BO12681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:45 Download gff for
BO12681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-PA | 508..1251 | 16..759 | 97 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:00 Download gff for
BO12681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-PA | 508..1251 | 16..759 | 97 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:40 Download gff for
BO12681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 554..1294 | 19..759 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:53 Download gff for
BO12681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 554..1294 | 19..759 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:53 Download gff for
BO12681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3446751..3447089 | 421..759 | 95 | -> | Minus |
2L | 3447144..3447549 | 14..420 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:40 Download gff for
BO12681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3446751..3447089 | 421..759 | 95 | -> | Minus |
arm_2L | 3447144..3447549 | 14..420 | 99 | -> | Minus |
BO12681.5prime Sequence
753 bp (719 high quality bases) assembled on 2006-05-08
> BO12681.5prime
GAAGTTATCAGTCGACATGCTGGCCAAAGTGCTAACTATCTTGGCCATCG
TGGCTTCAGCAGGAGCTGCTGACGACTTTGATCCTTTCATAGATATACCC
TTCAAACGGCTCAAGACTTCGGCGGAGCGCATTGCGGAGCACGGCTACCC
GGCCGAATCGCATTTTGTTGAGACCCCGGACGGCTATGTGCTGAATGTGT
TCCGCATTCCCCACTCCCCCAAGCTGAATAGCAATGGCAACGAGGGGGAG
TCGGAGGCATCGCGCCCGGTGGTCCTCATCATGCACGGGCTGTTCAGCTG
CTCGGATTGCTTCCTGCTCAATGGGCCGGAGGATGCGCTGCCGTACAACT
ACGCAGATGCCGGCTACGATGTCTGGCTAGGCAACGCCCGTGGCAACATC
TATTCGAGAAACAACACCCGGCTGAACGTGAAGCATCCGTACTTCTGGAA
GTTTAGCTGGCACGAGATTGGCTCCATCGATTTGCCCGCCACGATTGACT
ACATCCTGGCTGAGACGGGTCAACAGTCGCTGCACTACGTCGGCCATTCC
CAGGGATGCACTTCCTTCTTCGTGATGGGTTCCTACCGGCCGGAGTACAA
TGCCAAGATCAAGACGGCGCACATGCTCGCACCGCCCGTCTACATGGGCA
ACTCCACAGAGGGACTCATTGTGAGCACAGCTCCGCTGTTTGGTCACCAT
GGCATTGGCTCCACGCTGCTGGAAAACCAGGTTTTGCTGCCCCAAAACGC
GTT
BO12681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2772-PA | 1251 | CG2772-RA | 1..737 | 17..753 | 3660 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2772-RA | 1338 | CG2772-RA | 47..783 | 17..753 | 3670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3446348..3446980 | 121..753 | 3150 | 99.8 | Plus |
2L | 23513712 | 2L | 3446038..3446143 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 00:14:21 has no hits.
BO12681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:47 Download gff for
BO12681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-PA | 1..737 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:02 Download gff for
BO12681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-PA | 1..737 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:47 Download gff for
BO12681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 33..783 | 2..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:02:35 Download gff for
BO12681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 33..783 | 2..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:02:35 Download gff for
BO12681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3446024..3446142 | 2..121 | 95 | -> | Plus |
2L | 3446349..3446980 | 122..753 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:47 Download gff for
BO12681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3446024..3446142 | 2..121 | 95 | -> | Plus |
arm_2L | 3446349..3446980 | 122..753 | 99 | | Plus |
BO12681.complete Sequence
1282 bp assembled on 2007-10-17
GenBank Submission: FJ632521
> BO12681.complete
GAAGTTATCAGTCGACATGCTGGCCAAAGTGCTAACTATCTTGGCCATCG
TGGCTTCAGCAGGAGCTGCTGACGACTTTGATCCTTTCATAGATATACCC
TTCAAACGGCTCAAGACTTCGGCGGAGCGCATTGCGGAGCACGGCTACCC
GGCCGAATCGCATTTTGTTGAGACCCCGGACGGCTATGTGCTGAATGTGT
TCCGCATTCCCCACTCCCCCAAGCTGAATAGCAATGGCAACGAGGGGGAG
TCGGAGGCATCGCGCCCGGTGGTCCTCATCATGCACGGGCTGTTCAGCTG
CTCGGATTGCTTCCTGCTCAATGGGCCGGAGGATGCGCTGCCGTACAACT
ACGCAGATGCCGGCTACGATGTCTGGCTAGGCAACGCCCGTGGCAACATC
TATTCGAGAAACAACACCCGGCTGAACGTGAAGCATCCGTACTTCTGGAA
GTTTAGCTGGCACGAGATTGGCTCCATCGATTTGCCCGCCACGATTGACT
ACATCCTGGCTGAGACGGGTCAACAGTCGCTGCACTACGTCGGCCATTCC
CAGGGATGCACTTCCTTCTTCGTGATGGGTTCCTACCGGCCGGAGTACAA
TGCCAAGATCAAGACGGCGCACATGCTCGCACCGCCCGTCTACATGGGCA
ACTCCACAGAGGGACTCATTGTGAGCACAGCTCCGCTGTTTGGTCACCAT
GGCATTGGCTCCACGCTGCTGGAAAACCAGGTTTTGCTGCCCCAGAACGC
GTTCATCCAGCGAGTACTGGACACCACATGCAGCAATCAGCCGATCATGC
TCAGCTACTGCAAAACCTTGGCCATCCTCTGGGGAGGTCCCGAAATCGGC
AACCTTAACCAGACTCTGCTCCCGCAAATTGCCGAAACCCATCCCGCTGG
AGTCTCCTCAAACCAGGCCATTCACTACATTCAGTCCTACGCCTCCAACG
ATTTCCGTTTGTACGATTGGGGCAGCAAGAGAAACCTGGAATACTACGGC
GTGTCAGAGCCTCCGGCATATGATCTCACCAAGATCACCTCCGAGCTGTA
CTTATACTATGGCTTGGCTGATGGATCGGCCAATAAGCAGGACATCTCCC
GTCTGCCCGATCTTCTGCCCAATTTGGCACTGCTTCACGAGGTGCCCGAT
TCCACATGGGGTCACTTGGACTTTATCTTCGCCACGGAGGTCAAGAGAGT
GATTAACGATTTGGTTTTGGATTACAGTAAAGCCTACGATGCGCGAGAAA
CTAACAATGAGATTGCAAGCTTTCTAGACCAT
BO12681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2772-RA | 1251 | CG2772-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2772-RA | 1338 | CG2772-RA | 47..1294 | 17..1264 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3446348..3447089 | 121..862 | 3710 | 100 | Plus |
2L | 23513712 | 2L | 3447141..3447545 | 860..1264 | 2025 | 100 | Plus |
2L | 23513712 | 2L | 3446038..3446143 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:51:46 has no hits.
BO12681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:49 Download gff for
BO12681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 1..1251 | 17..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:11 Download gff for
BO12681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 28..1289 | 2..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:56 Download gff for
BO12681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 47..1294 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:10 Download gff for
BO12681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 42..1289 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:33 Download gff for
BO12681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2772-RA | 47..1294 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:33 Download gff for
BO12681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3446038..3446142 | 17..121 | 100 | -> | Plus |
2L | 3446349..3447089 | 122..862 | 100 | -> | Plus |
2L | 3447144..3447545 | 863..1266 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:56 Download gff for
BO12681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3447144..3447545 | 863..1266 | 99 | | Plus |
arm_2L | 3446038..3446142 | 17..121 | 100 | -> | Plus |
arm_2L | 3446349..3447089 | 122..862 | 100 | -> | Plus |
BO12681.pep Sequence
Translation from 16 to 1282
> BO12681.pep
MLAKVLTILAIVASAGAADDFDPFIDIPFKRLKTSAERIAEHGYPAESHF
VETPDGYVLNVFRIPHSPKLNSNGNEGESEASRPVVLIMHGLFSCSDCFL
LNGPEDALPYNYADAGYDVWLGNARGNIYSRNNTRLNVKHPYFWKFSWHE
IGSIDLPATIDYILAETGQQSLHYVGHSQGCTSFFVMGSYRPEYNAKIKT
AHMLAPPVYMGNSTEGLIVSTAPLFGHHGIGSTLLENQVLLPQNAFIQRV
LDTTCSNQPIMLSYCKTLAILWGGPEIGNLNQTLLPQIAETHPAGVSSNQ
AIHYIQSYASNDFRLYDWGSKRNLEYYGVSEPPAYDLTKITSELYLYYGL
ADGSANKQDISRLPDLLPNLALLHEVPDSTWGHLDFIFATEVKRVINDLV
LDYSKAYDARETNNEIASFLDH
BO12681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2772-PA | 416 | CG2772-PA | 1..416 | 1..416 | 2215 | 100 | Plus |
CG31089-PA | 421 | CG31089-PA | 10..417 | 5..410 | 917 | 45.2 | Plus |
mag-PA | 399 | CG5932-PA | 23..399 | 26..410 | 894 | 46.4 | Plus |
CG31091-PC | 424 | CG31091-PC | 59..424 | 39..410 | 815 | 42.7 | Plus |
CG31091-PB | 424 | CG31091-PB | 59..424 | 39..410 | 815 | 42.7 | Plus |