Clone BO12681 Report

Search the DGRC for BO12681

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG2772-RA
Protein status:BO12681.pep: validated full length
Sequenced Size:1282

Clone Sequence Records

BO12681.3prime Sequence

765 bp (647 high quality bases) assembled on 2006-05-08

> BO12681.3prime
ATGGTCTAGAAAGCTTGCAATCTCATTGTTAGTTTCTCGCGCATCGTAGG
CTTTACTGTAATCCAAAACCAAATCGTTAATCACTCTCTTGACCTCCGTG
GCGAAGATAAAGTCCAAGTGACCCCATGTGGAATCGGGCACCTCGTGAAG
CAGTGCCAAATTGGGCAGAAGATCGGGCAGACGGGAGATGTCCTGCTTAT
TGGCCGATCCATCAGCCAAGCCATAGTATAAGTACAGCTCGGAGGTGATC
TTGGTGAGATCATATGCCGGAGGCTCTGACACGCCGTAGTATTCCAGGTT
TCTCTTGCTGCCCCAATCGTACAAACGGAAATCGTTGGAGGCGTAGGACT
GAATGTAGTGAATGGCCTGGTTTGAGGAGACTCCAGCGGGATGGGTTTCG
GCAATTTGCGGGAGCAGAGTCTGGTTAAGGTTGCCGATTTCGGGACCTCC
CCAGAGGATGGCCAAGGTTTTGCAGTAGCTGAGCATGATCGGCTGATTGC
TGCATGTGGTGTCCAGTACTCGCTGGATGAACGCGTTCTGGGGCAGCAAA
ACCTGGTTTTCCAGCAACGTGGAGCCAATGCCATGGTGACCAAACAGCGG
AGCTGTGCTCACAATGAGTCCCTCTGTGGAATTGCCCATGTAAACGGGCG
GTGCGAAGCTGTGCGCCGTCTTGGATCTTGGATTGTACTCCGGCCGGTAA
GAACCCATCACGAAGAAAGAAGTGCATTCCCTGGGAATGGCCAACTAATG
CACCAACTGGTGAAC

BO12681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2772-PA 1251 CG2772-RA 611..1248 656..19 3115 99.5 Minus
CG2772-PA 1251 CG2772-RA 540..585 727..682 180 95.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2772-RA 1338 CG2772-RA 550..1294 763..19 3440 97.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3447141..3447545 423..19 2025 100 Minus
2L 23513712 2L 3446769..3447089 742..421 1350 95.3 Minus
Blast to na_te.dros performed on 2015-02-12 18:52:22 has no hits.

BO12681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:45 Download gff for BO12681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2772-PA 508..1251 16..759 97   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:00 Download gff for BO12681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2772-PA 508..1251 16..759 97   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:40 Download gff for BO12681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 554..1294 19..759 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:26:53 Download gff for BO12681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 554..1294 19..759 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:26:53 Download gff for BO12681.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3446751..3447089 421..759 95 -> Minus
2L 3447144..3447549 14..420 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:40 Download gff for BO12681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3446751..3447089 421..759 95 -> Minus
arm_2L 3447144..3447549 14..420 99 -> Minus

BO12681.5prime Sequence

753 bp (719 high quality bases) assembled on 2006-05-08

> BO12681.5prime
GAAGTTATCAGTCGACATGCTGGCCAAAGTGCTAACTATCTTGGCCATCG
TGGCTTCAGCAGGAGCTGCTGACGACTTTGATCCTTTCATAGATATACCC
TTCAAACGGCTCAAGACTTCGGCGGAGCGCATTGCGGAGCACGGCTACCC
GGCCGAATCGCATTTTGTTGAGACCCCGGACGGCTATGTGCTGAATGTGT
TCCGCATTCCCCACTCCCCCAAGCTGAATAGCAATGGCAACGAGGGGGAG
TCGGAGGCATCGCGCCCGGTGGTCCTCATCATGCACGGGCTGTTCAGCTG
CTCGGATTGCTTCCTGCTCAATGGGCCGGAGGATGCGCTGCCGTACAACT
ACGCAGATGCCGGCTACGATGTCTGGCTAGGCAACGCCCGTGGCAACATC
TATTCGAGAAACAACACCCGGCTGAACGTGAAGCATCCGTACTTCTGGAA
GTTTAGCTGGCACGAGATTGGCTCCATCGATTTGCCCGCCACGATTGACT
ACATCCTGGCTGAGACGGGTCAACAGTCGCTGCACTACGTCGGCCATTCC
CAGGGATGCACTTCCTTCTTCGTGATGGGTTCCTACCGGCCGGAGTACAA
TGCCAAGATCAAGACGGCGCACATGCTCGCACCGCCCGTCTACATGGGCA
ACTCCACAGAGGGACTCATTGTGAGCACAGCTCCGCTGTTTGGTCACCAT
GGCATTGGCTCCACGCTGCTGGAAAACCAGGTTTTGCTGCCCCAAAACGC
GTT

BO12681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2772-PA 1251 CG2772-RA 1..737 17..753 3660 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2772-RA 1338 CG2772-RA 47..783 17..753 3670 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3446348..3446980 121..753 3150 99.8 Plus
2L 23513712 2L 3446038..3446143 17..122 530 100 Plus
Blast to na_te.dros performed on 2015-02-10 00:14:21 has no hits.

BO12681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:47 Download gff for BO12681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2772-PA 1..737 17..753 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:02 Download gff for BO12681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2772-PA 1..737 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:32:47 Download gff for BO12681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 33..783 2..753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:02:35 Download gff for BO12681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 33..783 2..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:02:35 Download gff for BO12681.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3446024..3446142 2..121 95 -> Plus
2L 3446349..3446980 122..753 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:32:47 Download gff for BO12681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3446024..3446142 2..121 95 -> Plus
arm_2L 3446349..3446980 122..753 99   Plus

BO12681.complete Sequence

1282 bp assembled on 2007-10-17

GenBank Submission: FJ632521

> BO12681.complete
GAAGTTATCAGTCGACATGCTGGCCAAAGTGCTAACTATCTTGGCCATCG
TGGCTTCAGCAGGAGCTGCTGACGACTTTGATCCTTTCATAGATATACCC
TTCAAACGGCTCAAGACTTCGGCGGAGCGCATTGCGGAGCACGGCTACCC
GGCCGAATCGCATTTTGTTGAGACCCCGGACGGCTATGTGCTGAATGTGT
TCCGCATTCCCCACTCCCCCAAGCTGAATAGCAATGGCAACGAGGGGGAG
TCGGAGGCATCGCGCCCGGTGGTCCTCATCATGCACGGGCTGTTCAGCTG
CTCGGATTGCTTCCTGCTCAATGGGCCGGAGGATGCGCTGCCGTACAACT
ACGCAGATGCCGGCTACGATGTCTGGCTAGGCAACGCCCGTGGCAACATC
TATTCGAGAAACAACACCCGGCTGAACGTGAAGCATCCGTACTTCTGGAA
GTTTAGCTGGCACGAGATTGGCTCCATCGATTTGCCCGCCACGATTGACT
ACATCCTGGCTGAGACGGGTCAACAGTCGCTGCACTACGTCGGCCATTCC
CAGGGATGCACTTCCTTCTTCGTGATGGGTTCCTACCGGCCGGAGTACAA
TGCCAAGATCAAGACGGCGCACATGCTCGCACCGCCCGTCTACATGGGCA
ACTCCACAGAGGGACTCATTGTGAGCACAGCTCCGCTGTTTGGTCACCAT
GGCATTGGCTCCACGCTGCTGGAAAACCAGGTTTTGCTGCCCCAGAACGC
GTTCATCCAGCGAGTACTGGACACCACATGCAGCAATCAGCCGATCATGC
TCAGCTACTGCAAAACCTTGGCCATCCTCTGGGGAGGTCCCGAAATCGGC
AACCTTAACCAGACTCTGCTCCCGCAAATTGCCGAAACCCATCCCGCTGG
AGTCTCCTCAAACCAGGCCATTCACTACATTCAGTCCTACGCCTCCAACG
ATTTCCGTTTGTACGATTGGGGCAGCAAGAGAAACCTGGAATACTACGGC
GTGTCAGAGCCTCCGGCATATGATCTCACCAAGATCACCTCCGAGCTGTA
CTTATACTATGGCTTGGCTGATGGATCGGCCAATAAGCAGGACATCTCCC
GTCTGCCCGATCTTCTGCCCAATTTGGCACTGCTTCACGAGGTGCCCGAT
TCCACATGGGGTCACTTGGACTTTATCTTCGCCACGGAGGTCAAGAGAGT
GATTAACGATTTGGTTTTGGATTACAGTAAAGCCTACGATGCGCGAGAAA
CTAACAATGAGATTGCAAGCTTTCTAGACCAT

BO12681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2772-RA 1251 CG2772-PA 1..1248 17..1264 6240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2772-RA 1338 CG2772-RA 47..1294 17..1264 6240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3446348..3447089 121..862 3710 100 Plus
2L 23513712 2L 3447141..3447545 860..1264 2025 100 Plus
2L 23513712 2L 3446038..3446143 17..122 530 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:51:46 has no hits.

BO12681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:49 Download gff for BO12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 1..1251 17..1267 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:13:11 Download gff for BO12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 28..1289 2..1264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:56 Download gff for BO12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 47..1294 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:10 Download gff for BO12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 42..1289 17..1266 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:33 Download gff for BO12681.complete
Subject Subject Range Query Range Percent Splice Strand
CG2772-RA 47..1294 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:33 Download gff for BO12681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3446038..3446142 17..121 100 -> Plus
2L 3446349..3447089 122..862 100 -> Plus
2L 3447144..3447545 863..1266 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:56 Download gff for BO12681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3447144..3447545 863..1266 99   Plus
arm_2L 3446038..3446142 17..121 100 -> Plus
arm_2L 3446349..3447089 122..862 100 -> Plus

BO12681.pep Sequence

Translation from 16 to 1282

> BO12681.pep
MLAKVLTILAIVASAGAADDFDPFIDIPFKRLKTSAERIAEHGYPAESHF
VETPDGYVLNVFRIPHSPKLNSNGNEGESEASRPVVLIMHGLFSCSDCFL
LNGPEDALPYNYADAGYDVWLGNARGNIYSRNNTRLNVKHPYFWKFSWHE
IGSIDLPATIDYILAETGQQSLHYVGHSQGCTSFFVMGSYRPEYNAKIKT
AHMLAPPVYMGNSTEGLIVSTAPLFGHHGIGSTLLENQVLLPQNAFIQRV
LDTTCSNQPIMLSYCKTLAILWGGPEIGNLNQTLLPQIAETHPAGVSSNQ
AIHYIQSYASNDFRLYDWGSKRNLEYYGVSEPPAYDLTKITSELYLYYGL
ADGSANKQDISRLPDLLPNLALLHEVPDSTWGHLDFIFATEVKRVINDLV
LDYSKAYDARETNNEIASFLDH

BO12681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2772-PA 416 CG2772-PA 1..416 1..416 2215 100 Plus
CG31089-PA 421 CG31089-PA 10..417 5..410 917 45.2 Plus
mag-PA 399 CG5932-PA 23..399 26..410 894 46.4 Plus
CG31091-PC 424 CG31091-PC 59..424 39..410 815 42.7 Plus
CG31091-PB 424 CG31091-PB 59..424 39..410 815 42.7 Plus