Clone Sequence Records
BO12685.3prime Sequence
794 bp (763 high quality bases) assembled on 2006-05-08
> BO12685.3prime
ATGGTCTAGAAAGCTTGCCACCTGTCTGGGGCACTTGTACATGACGTTAA
GTTTGTTAATATCCGACTGGGTCATTTGCAATCGCTGCCCCATAAGTTCT
TCGGCACCTTCCTGTAGCGGCACAATGGTCATCTCTCCGTTTTTAGAGAA
CGCATAAGCGGTGTAGTGTAGTACACTGGAGTAATCATAGGGTTCTCCGT
AGTCCTCGACGGTTTCATTGTCGTACTTGTTGAAGTTGCCCTCAGTGCCC
TCAGTTATGTTTTCCTCAGCAATTCGGACATAGTCATCGCGATTCCAGGT
GCTTTGCTGGTGATAGAAGCCAAGGGCATGCAGGAACTCGTGGACAATTG
TTCCCAGACGGAAGCAGCCGGTGTCCAGAGCGTAGGTCTGCAGATTCAGC
TGCTGAACCCGGTTGCGATAGCCAACATACGAGTAACATCCTCCAGCCTC
CGAGGTAACATTCACATAATATTCCTGATCAGTGGTGGCCTCCTTGAAGA
CCAAGCAAGAACTTTGTTCTATTATGCGAATACCTCTTAGAATATGGTTG
CGATGCTCGGTGTCAATATCGCGATTGATGTAATAATAGACAATGCGGTT
TGGCCATCTGAAGGTTTCATTGCGAAGTCCGTTCCTTCCCTCCGGACTGG
GCACCATGTCGCCTTCAATATAGCCAGCTGTCAGTTCAGGATCGGTTTCT
ATCCTGTTCTGTGTGGTGGGAGCTGCCGAGCAGGAGCTGGCCAAGAATAT
GACCACTAAAGTTAAGGCCCAGGTCTTCATGTCGACTGATAACT
BO12685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15254-PA | 765 | CG15254-RA | 1..762 | 780..19 | 3785 | 99.8 | Minus |
CG15253-PA | 762 | CG15253-RA | 71..129 | 704..646 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15254-RB | 868 | CG15254-RB | 36..799 | 782..19 | 3805 | 99.9 | Minus |
CG15254-RA | 825 | CG15254-RA | 36..799 | 782..19 | 3805 | 99.9 | Minus |
CG15253-RA | 942 | CG15253-RA | 89..547 | 704..246 | 440 | 73.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15613974..15614519 | 19..564 | 2715 | 99.8 | Plus |
2L | 23513712 | 2L | 15614575..15614793 | 564..782 | 1095 | 100 | Plus |
2L | 23513712 | 2L | 15616205..15616263 | 646..704 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:24:12 has no hits.
BO12685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:51 Download gff for
BO12685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:09 Download gff for
BO12685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-PA | 1..765 | 15..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:11 Download gff for
BO12685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-RA | 31..802 | 15..788 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:05 Download gff for
BO12685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-RA | 31..802 | 15..788 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:05 Download gff for
BO12685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15613971..15614518 | 15..563 | 99 | <- | Plus |
2L | 15614575..15614798 | 564..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:11 Download gff for
BO12685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15613971..15614518 | 15..563 | 99 | <- | Plus |
arm_2L | 15614575..15614798 | 564..788 | 99 | | Plus |
BO12685.5prime Sequence
757 bp (681 high quality bases) assembled on 2006-05-08
> BO12685.5prime
GAAGTTATCAGTCGACATGAAGACCTGGGCCTTAACTTTAGTGGTCATAT
TCTTGGCCAGCTCCTGCTCGGCAGCTCCCACCACACAGAACAGGATAGAA
ACCGATCCTGAACTGACAGCTGGCTATATTGAAGGCGACATGGTGCCCAG
TCCGGAGGGAAGGAACGGACTTCGCAATGAAACCTTCAGATGGCCAAACC
GCATTGTCTATTATTACATCAATCGCGATATTGACACCGAGCATCGCAAC
CATATTCTAAGAGGTATTCGCATAATAGAACAAAGTTCTTGCTTGGTCTT
CAAGGAGGCCACCACTGATCAGGAATATTATGTGAATGTTACCTCGGAGG
CTGGAGGATGTTACTCGTATGTTGGCTATCGCAACCGGGTTCAGCAGCTG
AATCTGCAGACCTACGCTCTGGACACCGGCTGCTTCCGTCTGGGAACAAT
TGTCCACGAGTTCCTGCATGCCCTTGGCTTCTATCACCAGCAAAGCACCT
GGAATCGCGATGACTATGTCCGAATTGCTGAGGAAAACATAACTGAGGGC
ACTGAGGGCAACTTCAACAAGTACGACAATGAAACCGTCGAGGACTACGG
AGAACCCTATGATTACTCCAGTGTACTACACTACACCGCTTATGCGTTCT
CTAAAAACGGAGAGATGACCATTGTGCCGCTACAGGAAGGTGCCGAAGAA
CTTATGGGGCAGCGATTGCAAATGACCCAGTCGGATATTAACAAACTTAA
CGTCATG
BO12685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15254-PA | 765 | CG15254-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
CG15253-PA | 762 | CG15253-RA | 71..129 | 93..151 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15254-RB | 868 | CG15254-RB | 36..778 | 15..757 | 3715 | 100 | Plus |
CG15254-RA | 825 | CG15254-RA | 36..778 | 15..757 | 3715 | 100 | Plus |
CG15253-RA | 942 | CG15253-RA | 89..547 | 93..551 | 440 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15613995..15614519 | 757..233 | 2625 | 100 | Minus |
2L | 23513712 | 2L | 15614575..15614793 | 233..15 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 15616205..15616263 | 151..93 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:18:12 has no hits.
BO12685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:52 Download gff for
BO12685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:11 Download gff for
BO12685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:56 Download gff for
BO12685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-RA | 31..778 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:35 Download gff for
BO12685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-RA | 31..778 | 9..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:35 Download gff for
BO12685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15614575..15614798 | 9..233 | 99 | | Minus |
2L | 15613995..15614518 | 234..757 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:56 Download gff for
BO12685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15613995..15614518 | 234..757 | 100 | <- | Minus |
arm_2L | 15614575..15614798 | 9..233 | 99 | | Minus |
BO12685.complete Sequence
796 bp assembled on 2008-08-15
GenBank Submission: FJ632522
> BO12685.complete
GAAGTTATCAGTCGACATGAAGACCTGGGCCTTAACTTTAGTGGTCATAT
TCTTGGCCAGCTCCTGCTCGGCAGCTCCCACCACACAGAACAGGATAGAA
ACCGATCCTGAACTGACAGCTGGCTATATTGAAGGCGACATGGTGCCCAG
TCCGGAGGGAAGGAACGGACTTCGCAATGAAACCTTCAGATGGCCAAACC
GCATTGTCTATTATTACATCAATCGCGATATTGACACCGAGCATCGCAAC
CATATTCTAAGAGGTATTCGCATAATAGAACAAAGTTCTTGCTTGGTCTT
CAAGGAGGCCACCACTGATCAGGAATATTATGTGAATGTTACCTCGGAGG
CTGGAGGATGTTACTCGTATGTTGGCTATCGCAACCGGGTTCAGCAGCTG
AATCTGCAGACCTACGCTCTGGACACCGGCTGCTTCCGTCTGGGAACAAT
TGTCCACGAGTTCCTGCATGCCCTTGGCTTCTATCACCAGCAAAGCACCT
GGAATCGCGATGACTATGTCCGAATTGCTGAGGAAAACATAACTGAGGGC
ACTGAGGGCAACTTCAACAAGTACGACAATGAAACCGTCGAGGACTACGG
AGAACCCTATGATTACTCCAGTGTACTACACTACACCGCTTATGCGTTCT
CTAAAAACGGAGAGATGACCATTGTGCCGCTACAGGAAGGTGCCGAAGAA
CTTATGGGGCAGCGATTGCAAATGACCCAGTCGGATATTAACAAACTTAA
CGTCATGTACAAGTGCCCCAGGCAGGTGGCAAGCTTTCTAGACCAT
BO12685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15254-RB | 765 | CG15254-PB | 1..762 | 17..778 | 3810 | 100 | Plus |
CG15254-RA | 765 | CG15254-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
CG15253-RA | 762 | CG15253-PA | 71..529 | 93..551 | 420 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15254-RB | 868 | CG15254-RB | 36..799 | 15..778 | 3820 | 100 | Plus |
CG15254-RA | 825 | CG15254-RA | 36..799 | 15..778 | 3820 | 100 | Plus |
CG15253-RA | 942 | CG15253-RA | 89..547 | 93..551 | 420 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15613974..15614519 | 778..233 | 2730 | 100 | Minus |
2L | 23513712 | 2L | 15614575..15614793 | 233..15 | 1095 | 100 | Minus |
2L | 23513712 | 2L | 15616205..15616263 | 151..93 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:36:32 has no hits.
BO12685.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:14 Download gff for
BO12685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-RA | 27..798 | 9..782 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:05 Download gff for
BO12685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-RA | 38..799 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:19 Download gff for
BO12685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-RA | 34..795 | 17..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:00 Download gff for
BO12685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15254-RA | 38..799 | 17..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:00 Download gff for
BO12685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15614575..15614791 | 17..233 | 100 | | Minus |
2L | 15613972..15614518 | 234..780 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:05 Download gff for
BO12685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15613972..15614518 | 234..780 | 99 | <- | Minus |
arm_2L | 15614575..15614791 | 17..233 | 100 | | Minus |
BO12685.pep Sequence
Translation from 16 to 796
> BO12685.pep
MKTWALTLVVIFLASSCSAAPTTQNRIETDPELTAGYIEGDMVPSPEGRN
GLRNETFRWPNRIVYYYINRDIDTEHRNHILRGIRIIEQSSCLVFKEATT
DQEYYVNVTSEAGGCYSYVGYRNRVQQLNLQTYALDTGCFRLGTIVHEFL
HALGFYHQQSTWNRDDYVRIAEENITEGTEGNFNKYDNETVEDYGEPYDY
SSVLHYTAYAFSKNGEMTIVPLQEGAEELMGQRLQMTQSDINKLNVMYKC
PRQVASFLDH
BO12685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15254-PB | 254 | CG15254-PB | 1..254 | 1..254 | 1359 | 100 | Plus |
CG15254-PA | 254 | CG15254-PA | 1..254 | 1..254 | 1359 | 100 | Plus |
CG15253-PA | 253 | CG15253-PA | 4..249 | 4..251 | 890 | 66.5 | Plus |
CG7631-PA | 254 | CG7631-PA | 2..254 | 1..254 | 627 | 48.8 | Plus |
CG15255-PB | 261 | CG15255-PB | 28..258 | 30..251 | 591 | 48.9 | Plus |