Clone BO12685 Report

Search the DGRC for BO12685

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG15254-RA
Protein status:BO12685.pep: Imported from assembly
Sequenced Size:796

Clone Sequence Records

BO12685.3prime Sequence

794 bp (763 high quality bases) assembled on 2006-05-08

> BO12685.3prime
ATGGTCTAGAAAGCTTGCCACCTGTCTGGGGCACTTGTACATGACGTTAA
GTTTGTTAATATCCGACTGGGTCATTTGCAATCGCTGCCCCATAAGTTCT
TCGGCACCTTCCTGTAGCGGCACAATGGTCATCTCTCCGTTTTTAGAGAA
CGCATAAGCGGTGTAGTGTAGTACACTGGAGTAATCATAGGGTTCTCCGT
AGTCCTCGACGGTTTCATTGTCGTACTTGTTGAAGTTGCCCTCAGTGCCC
TCAGTTATGTTTTCCTCAGCAATTCGGACATAGTCATCGCGATTCCAGGT
GCTTTGCTGGTGATAGAAGCCAAGGGCATGCAGGAACTCGTGGACAATTG
TTCCCAGACGGAAGCAGCCGGTGTCCAGAGCGTAGGTCTGCAGATTCAGC
TGCTGAACCCGGTTGCGATAGCCAACATACGAGTAACATCCTCCAGCCTC
CGAGGTAACATTCACATAATATTCCTGATCAGTGGTGGCCTCCTTGAAGA
CCAAGCAAGAACTTTGTTCTATTATGCGAATACCTCTTAGAATATGGTTG
CGATGCTCGGTGTCAATATCGCGATTGATGTAATAATAGACAATGCGGTT
TGGCCATCTGAAGGTTTCATTGCGAAGTCCGTTCCTTCCCTCCGGACTGG
GCACCATGTCGCCTTCAATATAGCCAGCTGTCAGTTCAGGATCGGTTTCT
ATCCTGTTCTGTGTGGTGGGAGCTGCCGAGCAGGAGCTGGCCAAGAATAT
GACCACTAAAGTTAAGGCCCAGGTCTTCATGTCGACTGATAACT

BO12685.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15254-PA 765 CG15254-RA 1..762 780..19 3785 99.8 Minus
CG15253-PA 762 CG15253-RA 71..129 704..646 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG15254-RB 868 CG15254-RB 36..799 782..19 3805 99.9 Minus
CG15254-RA 825 CG15254-RA 36..799 782..19 3805 99.9 Minus
CG15253-RA 942 CG15253-RA 89..547 704..246 440 73.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15613974..15614519 19..564 2715 99.8 Plus
2L 23513712 2L 15614575..15614793 564..782 1095 100 Plus
2L 23513712 2L 15616205..15616263 646..704 205 89.8 Plus
Blast to na_te.dros performed on 2015-02-11 10:24:12 has no hits.

BO12685.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:51 Download gff for BO12685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15254-PA 1..765 15..780 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:09 Download gff for BO12685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15254-PA 1..765 15..780 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:04:11 Download gff for BO12685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15254-RA 31..802 15..788 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:05 Download gff for BO12685.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15254-RA 31..802 15..788 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:05 Download gff for BO12685.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15613971..15614518 15..563 99 <- Plus
2L 15614575..15614798 564..788 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:04:11 Download gff for BO12685.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15613971..15614518 15..563 99 <- Plus
arm_2L 15614575..15614798 564..788 99   Plus

BO12685.5prime Sequence

757 bp (681 high quality bases) assembled on 2006-05-08

> BO12685.5prime
GAAGTTATCAGTCGACATGAAGACCTGGGCCTTAACTTTAGTGGTCATAT
TCTTGGCCAGCTCCTGCTCGGCAGCTCCCACCACACAGAACAGGATAGAA
ACCGATCCTGAACTGACAGCTGGCTATATTGAAGGCGACATGGTGCCCAG
TCCGGAGGGAAGGAACGGACTTCGCAATGAAACCTTCAGATGGCCAAACC
GCATTGTCTATTATTACATCAATCGCGATATTGACACCGAGCATCGCAAC
CATATTCTAAGAGGTATTCGCATAATAGAACAAAGTTCTTGCTTGGTCTT
CAAGGAGGCCACCACTGATCAGGAATATTATGTGAATGTTACCTCGGAGG
CTGGAGGATGTTACTCGTATGTTGGCTATCGCAACCGGGTTCAGCAGCTG
AATCTGCAGACCTACGCTCTGGACACCGGCTGCTTCCGTCTGGGAACAAT
TGTCCACGAGTTCCTGCATGCCCTTGGCTTCTATCACCAGCAAAGCACCT
GGAATCGCGATGACTATGTCCGAATTGCTGAGGAAAACATAACTGAGGGC
ACTGAGGGCAACTTCAACAAGTACGACAATGAAACCGTCGAGGACTACGG
AGAACCCTATGATTACTCCAGTGTACTACACTACACCGCTTATGCGTTCT
CTAAAAACGGAGAGATGACCATTGTGCCGCTACAGGAAGGTGCCGAAGAA
CTTATGGGGCAGCGATTGCAAATGACCCAGTCGGATATTAACAAACTTAA
CGTCATG

BO12685.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15254-PA 765 CG15254-RA 1..741 17..757 3705 100 Plus
CG15253-PA 762 CG15253-RA 71..129 93..151 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15254-RB 868 CG15254-RB 36..778 15..757 3715 100 Plus
CG15254-RA 825 CG15254-RA 36..778 15..757 3715 100 Plus
CG15253-RA 942 CG15253-RA 89..547 93..551 440 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15613995..15614519 757..233 2625 100 Minus
2L 23513712 2L 15614575..15614793 233..15 1095 100 Minus
2L 23513712 2L 15616205..15616263 151..93 205 89.8 Minus
Blast to na_te.dros performed on 2015-02-11 10:18:12 has no hits.

BO12685.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:52 Download gff for BO12685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15254-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:11 Download gff for BO12685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15254-PA 1..741 17..757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:56 Download gff for BO12685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15254-RA 31..778 9..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:35 Download gff for BO12685.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15254-RA 31..778 9..757 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:35 Download gff for BO12685.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15614575..15614798 9..233 99   Minus
2L 15613995..15614518 234..757 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:56 Download gff for BO12685.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15613995..15614518 234..757 100 <- Minus
arm_2L 15614575..15614798 9..233 99   Minus

BO12685.complete Sequence

796 bp assembled on 2008-08-15

GenBank Submission: FJ632522

> BO12685.complete
GAAGTTATCAGTCGACATGAAGACCTGGGCCTTAACTTTAGTGGTCATAT
TCTTGGCCAGCTCCTGCTCGGCAGCTCCCACCACACAGAACAGGATAGAA
ACCGATCCTGAACTGACAGCTGGCTATATTGAAGGCGACATGGTGCCCAG
TCCGGAGGGAAGGAACGGACTTCGCAATGAAACCTTCAGATGGCCAAACC
GCATTGTCTATTATTACATCAATCGCGATATTGACACCGAGCATCGCAAC
CATATTCTAAGAGGTATTCGCATAATAGAACAAAGTTCTTGCTTGGTCTT
CAAGGAGGCCACCACTGATCAGGAATATTATGTGAATGTTACCTCGGAGG
CTGGAGGATGTTACTCGTATGTTGGCTATCGCAACCGGGTTCAGCAGCTG
AATCTGCAGACCTACGCTCTGGACACCGGCTGCTTCCGTCTGGGAACAAT
TGTCCACGAGTTCCTGCATGCCCTTGGCTTCTATCACCAGCAAAGCACCT
GGAATCGCGATGACTATGTCCGAATTGCTGAGGAAAACATAACTGAGGGC
ACTGAGGGCAACTTCAACAAGTACGACAATGAAACCGTCGAGGACTACGG
AGAACCCTATGATTACTCCAGTGTACTACACTACACCGCTTATGCGTTCT
CTAAAAACGGAGAGATGACCATTGTGCCGCTACAGGAAGGTGCCGAAGAA
CTTATGGGGCAGCGATTGCAAATGACCCAGTCGGATATTAACAAACTTAA
CGTCATGTACAAGTGCCCCAGGCAGGTGGCAAGCTTTCTAGACCAT

BO12685.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15254-RB 765 CG15254-PB 1..762 17..778 3810 100 Plus
CG15254-RA 765 CG15254-PA 1..762 17..778 3810 100 Plus
CG15253-RA 762 CG15253-PA 71..529 93..551 420 72.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15254-RB 868 CG15254-RB 36..799 15..778 3820 100 Plus
CG15254-RA 825 CG15254-RA 36..799 15..778 3820 100 Plus
CG15253-RA 942 CG15253-RA 89..547 93..551 420 72.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15613974..15614519 778..233 2730 100 Minus
2L 23513712 2L 15614575..15614793 233..15 1095 100 Minus
2L 23513712 2L 15616205..15616263 151..93 205 89.8 Minus
Blast to na_te.dros performed on 2014-11-27 15:36:32 has no hits.

BO12685.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:36:14 Download gff for BO12685.complete
Subject Subject Range Query Range Percent Splice Strand
CG15254-RA 27..798 9..782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:05 Download gff for BO12685.complete
Subject Subject Range Query Range Percent Splice Strand
CG15254-RA 38..799 17..780 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:07:19 Download gff for BO12685.complete
Subject Subject Range Query Range Percent Splice Strand
CG15254-RA 34..795 17..780 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:00 Download gff for BO12685.complete
Subject Subject Range Query Range Percent Splice Strand
CG15254-RA 38..799 17..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:00 Download gff for BO12685.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15614575..15614791 17..233 100   Minus
2L 15613972..15614518 234..780 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:05 Download gff for BO12685.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15613972..15614518 234..780 99 <- Minus
arm_2L 15614575..15614791 17..233 100   Minus

BO12685.pep Sequence

Translation from 16 to 796

> BO12685.pep
MKTWALTLVVIFLASSCSAAPTTQNRIETDPELTAGYIEGDMVPSPEGRN
GLRNETFRWPNRIVYYYINRDIDTEHRNHILRGIRIIEQSSCLVFKEATT
DQEYYVNVTSEAGGCYSYVGYRNRVQQLNLQTYALDTGCFRLGTIVHEFL
HALGFYHQQSTWNRDDYVRIAEENITEGTEGNFNKYDNETVEDYGEPYDY
SSVLHYTAYAFSKNGEMTIVPLQEGAEELMGQRLQMTQSDINKLNVMYKC
PRQVASFLDH

BO12685.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15254-PB 254 CG15254-PB 1..254 1..254 1359 100 Plus
CG15254-PA 254 CG15254-PA 1..254 1..254 1359 100 Plus
CG15253-PA 253 CG15253-PA 4..249 4..251 890 66.5 Plus
CG7631-PA 254 CG7631-PA 2..254 1..254 627 48.8 Plus
CG15255-PB 261 CG15255-PB 28..258 30..251 591 48.9 Plus