Clone BO12686 Report

Search the DGRC for BO12686

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG5676-RA
Protein status:BO12686.pep: validated full length
Sequenced Size:502

Clone Sequence Records

BO12686.5prime Sequence

500 bp (499 high quality bases) assembled on 2006-05-08

> BO12686.5prime
GAAGTTATCAGTCGACATGACTAATTATTCGGAAATTTTTAAGAAAGTTT
TTAACGATATTGGCCAACGTTCAGCATATTCGCAGATGCTTATTGGCGTT
TCATCAGGATGGGTCACAGGATATACGACAATGAAAATAGGCAAATTTGC
TGCCTTTGCAGTTGGCGGCAGCATAATCTTGCTCGAAATCGCCCACCAAG
AAGGACTTATAAAAATAAATTGGTCTAAGTTGGATAAGAGCGTGGATAAG
CTCGCCGATAAAGTGGAAGCCTCGCTGGGTCGTGAGAAGAACTGGAAGGA
TAAGACCGAAAGATATGTCGACAATCAATTAGACAGAGCTGAAAGCCTCC
TAACCCGAAACGGCAAGAAAGTGGCGAAATGGTACACCAAACTGATTGGC
GATGAAGAGGGTCCAAAAGTCAACGATCTGCACATATTTTTGGCATCATT
TTTCGGTGGCGTTGCCCTGGGCATTGCTACTGGAGCAAGCTTTCTAGACC

BO12686.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-PA 471 CG5676-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-RA 769 CG5676-RA 77..544 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10255078..10255271 304..111 970 100 Minus
2L 23513712 2L 10254835..10255016 484..303 910 100 Minus
2L 23513712 2L 10255720..10255815 112..17 480 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:35:42 has no hits.

BO12686.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:54 Download gff for BO12686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5676-PA 1..471 17..488 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:13 Download gff for BO12686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5676-PA 1..471 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:22 Download gff for BO12686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 77..547 17..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:17 Download gff for BO12686.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 77..547 17..488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:17 Download gff for BO12686.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10254831..10255014 305..488 98 <- Minus
2L 10255078..10255270 112..304 100 <- Minus
2L 10255721..10255815 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:22 Download gff for BO12686.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10254831..10255014 305..488 98 <- Minus
arm_2L 10255078..10255270 112..304 100 <- Minus
arm_2L 10255721..10255815 17..111 100   Minus

BO12686.3prime Sequence

500 bp (499 high quality bases) assembled on 2006-05-08

> BO12686.3prime
ATGGTCTAGAAAGCTTGCTCCCCTAGCAATGCCCAGGGCAACGCCACCGA
AAAATGATGCCAAAAATATGTGCAGATCGTTGACTTTTGGACCCTCTTCA
TCGCCAATCAGTTTGGTGTACCATTTCGCCACTTTCTTGCCGTTTCGGGT
TAGGAGGCTTTCAGCTCTGTCTAATTGATTGTCGACATATCTTTCGGTCT
TATCCTTCCAGTTCTTCTCACGACCCAGCGAGGCTTCCACTTTATCGGCG
AGCTTATCCACGCTCTTATCCAACTTAGACCAATTTATTTTTATAAGTCC
TTCTTGGTGGGCGATTTCGAGCAAGATTATGCTGCCGCCAACTGCAAAGG
CAGCAAATTTGCCTATTTTCATTGTCGTATATCCTGTGACCCATCCTGAT
GAAACGCCAATAAGCATCTGCGAATATGCTGAACGTTGGCCAATATCGTT
AAAAACTTTCTTAAAAATTTCCGAATAATTAGTCATGTCGACTGATAACT

BO12686.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-PA 471 CG5676-RA 1..463 486..24 2315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-RA 769 CG5676-RA 77..539 486..24 2315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10255078..10255271 199..392 970 100 Plus
2L 23513712 2L 10254840..10255016 24..200 885 100 Plus
2L 23513712 2L 10255720..10255815 391..486 480 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:32:58 has no hits.

BO12686.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:53 Download gff for BO12686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5676-PA 1..471 15..486 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:12 Download gff for BO12686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5676-PA 1..471 15..486 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:55 Download gff for BO12686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 77..547 15..486 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:47:05 Download gff for BO12686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 77..547 15..486 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:47:05 Download gff for BO12686.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10254831..10255014 15..198 97 <- Plus
2L 10255078..10255270 199..391 100 <- Plus
2L 10255721..10255815 392..486 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:55 Download gff for BO12686.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10254831..10255014 15..198 97 <- Plus
arm_2L 10255078..10255270 199..391 100 <- Plus
arm_2L 10255721..10255815 392..486 100   Plus

BO12686.complete Sequence

502 bp assembled on 2006-10-11

GenBank Submission: FJ632523

> BO12686.complete
GAAGTTATCAGTCGACATGACTAATTATTCGGAAATTTTTAAGAAAGTTT
TTAACGATATTGGCCAACGTTCAGCATATTCGCAGATGCTTATTGGCGTT
TCATCAGGATGGGTCACAGGATATACGACAATGAAAATAGGCAAATTTGC
TGCCTTTGCAGTTGGCGGCAGCATAATCTTGCTCGAAATCGCCCACCAAG
AAGGACTTATAAAAATAAATTGGTCTAAGTTGGATAAGAGCGTGGATAAG
CTCGCCGATAAAGTGGAAGCCTCGCTGGGTCGTGAGAAGAACTGGAAGGA
TAAGACCGAAAGATATGTCGACAATCAATTAGACAGAGCTGAAAGCCTCC
TAACCCGAAACGGCAAGAAAGTGGCGAAATGGTACACCAAACTGATTGGC
GATGAAGAGGGTCCAAAAGTCAACGATCTGCACATATTTTTGGCATCATT
TTTCGGTGGCGTTGCCCTGGGCATTGCTACTGGAGCAAGCTTTCTAGACC
AT

BO12686.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-RA 471 CG5676-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-RA 769 CG5676-RA 77..544 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10255078..10255271 304..111 970 100 Minus
2L 23513712 2L 10254835..10255016 484..303 910 100 Minus
2L 23513712 2L 10255720..10255815 112..17 480 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:49:16 has no hits.

BO12686.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:02 Download gff for BO12686.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 1..471 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:47 Download gff for BO12686.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 70..540 17..488 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:17 Download gff for BO12686.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 77..544 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:02 Download gff for BO12686.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 70..540 17..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:02 Download gff for BO12686.complete
Subject Subject Range Query Range Percent Splice Strand
CG5676-RA 77..544 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:02 Download gff for BO12686.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10254833..10255014 305..486 98 <- Minus
2L 10255078..10255270 112..304 100 <- Minus
2L 10255721..10255815 17..111 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:17 Download gff for BO12686.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10254833..10255014 305..486 98 <- Minus
arm_2L 10255078..10255270 112..304 100 <- Minus
arm_2L 10255721..10255815 17..111 100   Minus

BO12686.pep Sequence

Translation from 16 to 502

> BO12686.pep
MTNYSEIFKKVFNDIGQRSAYSQMLIGVSSGWVTGYTTMKIGKFAAFAVG
GSIILLEIAHQEGLIKINWSKLDKSVDKLADKVEASLGREKNWKDKTERY
VDNQLDRAESLLTRNGKKVAKWYTKLIGDEEGPKVNDLHIFLASFFGGVA
LGIATGASFLDH

BO12686.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5676-PA 156 CG5676-PA 1..156 1..156 802 100 Plus
CG12511-PB 131 CG12511-PB 6..67 7..68 139 40.3 Plus