Clone Sequence Records
BO12686.5prime Sequence
500 bp (499 high quality bases) assembled on 2006-05-08
> BO12686.5prime
GAAGTTATCAGTCGACATGACTAATTATTCGGAAATTTTTAAGAAAGTTT
TTAACGATATTGGCCAACGTTCAGCATATTCGCAGATGCTTATTGGCGTT
TCATCAGGATGGGTCACAGGATATACGACAATGAAAATAGGCAAATTTGC
TGCCTTTGCAGTTGGCGGCAGCATAATCTTGCTCGAAATCGCCCACCAAG
AAGGACTTATAAAAATAAATTGGTCTAAGTTGGATAAGAGCGTGGATAAG
CTCGCCGATAAAGTGGAAGCCTCGCTGGGTCGTGAGAAGAACTGGAAGGA
TAAGACCGAAAGATATGTCGACAATCAATTAGACAGAGCTGAAAGCCTCC
TAACCCGAAACGGCAAGAAAGTGGCGAAATGGTACACCAAACTGATTGGC
GATGAAGAGGGTCCAAAAGTCAACGATCTGCACATATTTTTGGCATCATT
TTTCGGTGGCGTTGCCCTGGGCATTGCTACTGGAGCAAGCTTTCTAGACC
BO12686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5676-PA | 471 | CG5676-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5676-RA | 769 | CG5676-RA | 77..544 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10255078..10255271 | 304..111 | 970 | 100 | Minus |
2L | 23513712 | 2L | 10254835..10255016 | 484..303 | 910 | 100 | Minus |
2L | 23513712 | 2L | 10255720..10255815 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:35:42 has no hits.
BO12686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:54 Download gff for
BO12686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-PA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:13 Download gff for
BO12686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-PA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:42:22 Download gff for
BO12686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 77..547 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:58:17 Download gff for
BO12686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 77..547 | 17..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:58:17 Download gff for
BO12686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10254831..10255014 | 305..488 | 98 | <- | Minus |
2L | 10255078..10255270 | 112..304 | 100 | <- | Minus |
2L | 10255721..10255815 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:42:22 Download gff for
BO12686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10254831..10255014 | 305..488 | 98 | <- | Minus |
arm_2L | 10255078..10255270 | 112..304 | 100 | <- | Minus |
arm_2L | 10255721..10255815 | 17..111 | 100 | | Minus |
BO12686.3prime Sequence
500 bp (499 high quality bases) assembled on 2006-05-08
> BO12686.3prime
ATGGTCTAGAAAGCTTGCTCCCCTAGCAATGCCCAGGGCAACGCCACCGA
AAAATGATGCCAAAAATATGTGCAGATCGTTGACTTTTGGACCCTCTTCA
TCGCCAATCAGTTTGGTGTACCATTTCGCCACTTTCTTGCCGTTTCGGGT
TAGGAGGCTTTCAGCTCTGTCTAATTGATTGTCGACATATCTTTCGGTCT
TATCCTTCCAGTTCTTCTCACGACCCAGCGAGGCTTCCACTTTATCGGCG
AGCTTATCCACGCTCTTATCCAACTTAGACCAATTTATTTTTATAAGTCC
TTCTTGGTGGGCGATTTCGAGCAAGATTATGCTGCCGCCAACTGCAAAGG
CAGCAAATTTGCCTATTTTCATTGTCGTATATCCTGTGACCCATCCTGAT
GAAACGCCAATAAGCATCTGCGAATATGCTGAACGTTGGCCAATATCGTT
AAAAACTTTCTTAAAAATTTCCGAATAATTAGTCATGTCGACTGATAACT
BO12686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5676-PA | 471 | CG5676-RA | 1..463 | 486..24 | 2315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5676-RA | 769 | CG5676-RA | 77..539 | 486..24 | 2315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10255078..10255271 | 199..392 | 970 | 100 | Plus |
2L | 23513712 | 2L | 10254840..10255016 | 24..200 | 885 | 100 | Plus |
2L | 23513712 | 2L | 10255720..10255815 | 391..486 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:32:58 has no hits.
BO12686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:53 Download gff for
BO12686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-PA | 1..471 | 15..486 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:12 Download gff for
BO12686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-PA | 1..471 | 15..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:31:55 Download gff for
BO12686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 77..547 | 15..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:47:05 Download gff for
BO12686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 77..547 | 15..486 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:47:05 Download gff for
BO12686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10254831..10255014 | 15..198 | 97 | <- | Plus |
2L | 10255078..10255270 | 199..391 | 100 | <- | Plus |
2L | 10255721..10255815 | 392..486 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:31:55 Download gff for
BO12686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10254831..10255014 | 15..198 | 97 | <- | Plus |
arm_2L | 10255078..10255270 | 199..391 | 100 | <- | Plus |
arm_2L | 10255721..10255815 | 392..486 | 100 | | Plus |
BO12686.complete Sequence
502 bp assembled on 2006-10-11
GenBank Submission: FJ632523
> BO12686.complete
GAAGTTATCAGTCGACATGACTAATTATTCGGAAATTTTTAAGAAAGTTT
TTAACGATATTGGCCAACGTTCAGCATATTCGCAGATGCTTATTGGCGTT
TCATCAGGATGGGTCACAGGATATACGACAATGAAAATAGGCAAATTTGC
TGCCTTTGCAGTTGGCGGCAGCATAATCTTGCTCGAAATCGCCCACCAAG
AAGGACTTATAAAAATAAATTGGTCTAAGTTGGATAAGAGCGTGGATAAG
CTCGCCGATAAAGTGGAAGCCTCGCTGGGTCGTGAGAAGAACTGGAAGGA
TAAGACCGAAAGATATGTCGACAATCAATTAGACAGAGCTGAAAGCCTCC
TAACCCGAAACGGCAAGAAAGTGGCGAAATGGTACACCAAACTGATTGGC
GATGAAGAGGGTCCAAAAGTCAACGATCTGCACATATTTTTGGCATCATT
TTTCGGTGGCGTTGCCCTGGGCATTGCTACTGGAGCAAGCTTTCTAGACC
AT
BO12686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5676-RA | 471 | CG5676-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5676-RA | 769 | CG5676-RA | 77..544 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10255078..10255271 | 304..111 | 970 | 100 | Minus |
2L | 23513712 | 2L | 10254835..10255016 | 484..303 | 910 | 100 | Minus |
2L | 23513712 | 2L | 10255720..10255815 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:49:16 has no hits.
BO12686.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:02 Download gff for
BO12686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 1..471 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:47 Download gff for
BO12686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 70..540 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:17 Download gff for
BO12686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 77..544 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:02 Download gff for
BO12686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 70..540 | 17..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:02 Download gff for
BO12686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5676-RA | 77..544 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:02 Download gff for
BO12686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10254833..10255014 | 305..486 | 98 | <- | Minus |
2L | 10255078..10255270 | 112..304 | 100 | <- | Minus |
2L | 10255721..10255815 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:17 Download gff for
BO12686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10254833..10255014 | 305..486 | 98 | <- | Minus |
arm_2L | 10255078..10255270 | 112..304 | 100 | <- | Minus |
arm_2L | 10255721..10255815 | 17..111 | 100 | | Minus |
BO12686.pep Sequence
Translation from 16 to 502
> BO12686.pep
MTNYSEIFKKVFNDIGQRSAYSQMLIGVSSGWVTGYTTMKIGKFAAFAVG
GSIILLEIAHQEGLIKINWSKLDKSVDKLADKVEASLGREKNWKDKTERY
VDNQLDRAESLLTRNGKKVAKWYTKLIGDEEGPKVNDLHIFLASFFGGVA
LGIATGASFLDH
BO12686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5676-PA | 156 | CG5676-PA | 1..156 | 1..156 | 802 | 100 | Plus |
CG12511-PB | 131 | CG12511-PB | 6..67 | 7..68 | 139 | 40.3 | Plus |