Clone BO12689 Report

Search the DGRC for BO12689

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:126
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptGp150-RA
Protein status:BO12689.pep: Imported from assembly
Sequenced Size:3187

Clone Sequence Records

BO12689.complete Sequence

3187 bp assembled on 2009-09-17

GenBank Submission: FJ632524

> BO12689.complete
GAAGTTATCAGTCGACATGAGTCGCCAGTCGACTTGCAGGCTAGTCCTGC
TGCTGGCCTTTACCCTGGCCCTAATCCACGCCAGCCACTCAAATACCGTG
GGCCCCAAGATCCACTTCATTCATGACGATCTGACGGAAAACGAGCTGAA
CTCTGGAGAGGAGGTGAGCCCGACCGAGAGTCTGCCCAAAATCTCCACCC
CCAAGGTAAAGGATTTACCCGTGGAGACGACCACCAGGAGCCCCACAAAA
AAAACCACGTCCTCCGGCACCGAGAAGTCCCTTAGCGAGGAGGCTTGGAA
TGATCTGATGGAGGCGGCCAAGCACAGCCAAGCTTTGGCTGATGATCCAC
ACTTCAACAAGATGCTCAATACTACCGTCGCCGCCGGGGAGAAGAACTCC
ACCGATACCGACGATAGCGAATACTATGACTACGATGATGATTACAACTA
TTTCGATGAGGAGACGGTGACGATTTCCCCCAGTCCCAAGAAGGCCAAGA
GCAACCCCAAGCTGCAGCCCATTGTGGATGCCACCATCACGAAGTCCAAG
AGCAAATCCAACGACCAAAAGACCAAAGAGAGTGCTAACGATATCGACAG
CGACTCTCAATATGACTACGACGAGGGTCTGGATGATGATGATGACGAGG
ACGATGCCGCTGACGACCTTTTGACCGATGATGAGCAAGTTGTCTTCAGC
GAGGACGTTCCGTGTCCAAGATTCTGCCAGTGTGCCCGGAATGTCAACAG
CTATCTGGTGGCCACCTGCAGCAGACTTGACATGGGCATCCAGAAGTTTG
GCTCTGACATTACGGATTTGGTTGTGACCAATGTGGGTCCTAAGTACCCC
ATCCTGATGGGACCCAACTTCTTCCAGAATCTGGGTCTTAAGAACGTGGC
TTCCATCAAGATCGCCAACTGCACCTTGGAGTACCTGCACGCCGAGGCCT
TCCACGGACTGAACGAGCTGTACGCTGTTAACTTGACGGATGTTGGTTTG
GCTATCATTAATCCCGATACCTTTGTTGGAAACAAGAAACTGCGCATGCT
GACCATTTCGGGTAACGACTTGAGTGTGATGTCCAGCATTCACTATTTGC
TGAAGTCTTCCAGCATTGAGGAGCTGGACTTCTCGCGCAACAACCTTATG
GAGTTGAATCCCAAGGCCTTCTCCCATCTATCCAATGTCGTCTACATTAA
CTTGAGCCAGAACAGTCTCAAGAAACTGCCCGAGAAGGCTTTCGAGAAGG
TTACTCTTCTGGAAGAATTGGATCTGTCTTACAACTCGCTGACTGAATTG
CCCCGCGATATCTTCAATGGCACCACCCTGTCCATACTGCACCTGAAGTA
CAATACCTTCAATGGCGATCTGCACTTTGGCACCAAGGATCTGCAGCAGC
TGGACTTGAGCTTTAACTCGATTGTCCAAGTGCACCACAGCATGTTCGAC
AAGATGCCCGGTCTGACCAACCTGAACCTCAAGGGCAATGGCATTAAGAA
GATCCAACCGGACTCGTTCCTTACTTTGAAGAACCTGCGCCACATCGATT
TGTCCATCAACGATCTGGACCAGATCTCGGGAATGCTGTTCTTTAAGAAC
TCTGAGCTGGATGTGATCCGTTTGAACGACAATCCTCGTCTGAGCCAGTT
GCCCACCGATGGCTTCTTGAGCTACAGTGGGGAGTTCACCGTCTACTACC
TGGATATTTCCAATTGCGCTATCGGTCCATTGGGTCACAAGGCCTTCTCC
ACTATGCCGCATTTGACCACCTTGAAGTTGGCCTGGAACAACATTAATCA
TCTGCCGCGCGAGATTTTCACTGGACTGCACAAGCTGATTGACTTGGATC
TGAGCAACAACCTGATCACCCGCATGGACGATCTGATCTTCATGGACAAC
GGAGAGCTGACTAAGCTCAGTCTGGCTGGAAATCCCATTAGCCGCTTGTC
CGTCCGCCTCTTCCTGCCGCTGCACCAACTGCGATGCCTGGACGTCAATG
ACTGCGAGCTTACCACCTTGCTCTCCGATCGCGACTTGGGTGCGGGTTAC
AAGATCTTTGACAGCCTGCGCTCCTTTAACGCCTCTGGTAATTTGATCAA
GAAGATCTCTTCGGAGGATGTGAAGAGCTTCAAGAACCTGCGTTCTCTGG
ATATCACCAACAATCCGCTGAAGTGCACTCCCGACTTCCAGGAGTTCATC
AGCTACGTCACTCTTCAGATGCAGATGACTCCCAAGCGTCTGCCCGTGCT
GGCCAATCTGGAGGACGATGCTACTATTGTGCAGCTGGAGACTCTGGCTC
AGGCTGGTTGGTCGTCTTTGGCCCACGAGGTGTGCAAGCATGCCGAAGGA
TCAGATCTCTTGGACGAAAAGAAGGCCGACAGTGCCGAAGCCAAACTGGA
GAAGCGTCTGAAGGAAAGCGTGAAGAAGCTTAACGAGGATGAGGCTAAGT
TGCTGAGTGTCCTGGACAAGAGTGTGCTAGACAAGAGCAGGCTGAGCAGC
ATGCAGAAGATCATGAAGGGATCGGTGAACACTGAAACCGCGAAGCCTGA
GGAAGATGCTGACGAGGAGAATCTGAACAATGGCGGCGAGGATAAGGAGG
ATGACAGCAGTGACTATGACAGTGAGGAGGATGATGATGACGATGATGAG
GACGATGATGATGACAACAACGATGATGATCGCTTCGAGGAGGCCAAGAA
GAATGCCAAGGCTAAGGCCGATGCTAACAAGGCCTTCGACACGTTCGTGA
ACAAGGAACTGAAGCCAGTCCTGAAGACCGATGGTATCCAGGCGGAGGAA
GTGGACATGTCTCAGGAGACCCGTGATAAATTCCTTCTGGAGAAACTGGG
CTTCGACAGCGAAAGCGAGGAGTCAGATGAGTACACCGAGAAGATGATCT
TCCACGGCGAACTATCCTACGACCTGGTGGTCCCACTGATCGTCGTGTCC
TTCTGCCTCCTGATGATCGTGCTGTCCATCGCCCGAGTGATCTACGTGGT
GCTGCGCAAGCGCGGCGAGCGCTATCGCATGGCGCTGCTGGCCTCAAAGA
ACTCGTTCGTATACCAGAAGTTGAGCGAGGACATCGTGAAGCCGACCAGC
AAGGAGCAGAAGGAGCCCAAGCATCTGAAGCAGCCAAAGGTGCACCGATA
CGCGCCCATCAATCAGGTCGCAAGCTTTCTAGACCAT

BO12689.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
Gp150-RF 3156 CG5820-PF 1..3153 17..3169 15750 100 Plus
Gp150-RD 3231 CG5820-PD 76..3228 17..3169 15750 100 Plus
Gp150-RC 3156 CG5820-PC 1..3153 17..3169 15750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
Gp150-RF 4124 CG5820-RF 77..3229 17..3169 15750 100 Plus
Gp150-RD 4190 CG5820-RD 143..3295 17..3169 15750 100 Plus
Gp150-RC 4360 CG5820-RC 313..3465 17..3169 15750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22326394..22328130 1104..2840 8670 99.9 Plus
2R 25286936 2R 22325781..22326337 549..1105 2785 100 Plus
2R 25286936 2R 22325194..22325727 17..550 2670 100 Plus
2R 25286936 2R 22328192..22328521 2840..3169 1650 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:39:56 has no hits.

BO12689.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-09-17 15:20:12 Download gff for BO12689.complete
Subject Subject Range Query Range Percent Splice Strand
Gp150-RC 296..3448 17..3171 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:09 Download gff for BO12689.complete
Subject Subject Range Query Range Percent Splice Strand
Gp150-RC 313..3465 17..3171 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:13 Download gff for BO12689.complete
Subject Subject Range Query Range Percent Splice Strand
Gp150-RC 296..3448 17..3171 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:02 Download gff for BO12689.complete
Subject Subject Range Query Range Percent Splice Strand
Gp150-RC 313..3465 17..3171 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:02 Download gff for BO12689.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22325194..22325727 17..550 100 -> Plus
2R 22325783..22326337 551..1105 100 -> Plus
2R 22326396..22328130 1106..2840 99 -> Plus
2R 22328193..22328521 2841..3171 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:09 Download gff for BO12689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18212699..18213232 17..550 100 -> Plus
arm_2R 18213288..18213842 551..1105 100 -> Plus
arm_2R 18213901..18215635 1106..2840 99 -> Plus
arm_2R 18215698..18216026 2841..3171 99   Plus

BO12689.3prime Sequence

824 bp (726 high quality bases) assembled on 2006-05-08

> BO12689.3prime
ATGGTCTAGAAAGCTTGCGACCTGATTGATGGGCGCGTATCGGTGCACCT
TTGGCTGCTTCAGATGCTTGGGCTCCTTCTGCTCCTTGCTGGTCGGCTTC
ACGATGTCCTCGCTCAACTTCTGGTATACGAACGAGTTCTTTGAGGCCAG
CAGCGCCATGCGATAGCGCTCGCCGCGCTTGCGCAGCACCACGTAGATCA
CTCGGGCGATGGACAGCACGATCATCAGGAGGCAGAAGGACACGACGATC
AGTGGGACCACCAGGTCGTAGGATAGTTCGCCGTGGAAGATCATCTTCTC
GGTGTACTCATCTGACTCCTCGCTTTCGCTGTCGAAGCCCAGTTTCTCCA
GAAGGAATTTATCACGGGTCTCCTGAGACATGTCCACTTCCTCCGCCTGG
ATACCATCGGTCTTCAGGACTGGCTTCAGTTCCTTGTTCACGAACGTGTC
GAAGGCCTTGTTAGCATCGGCCTTAGCCTTGGCATTCTTCTTGGCCTCCT
CGAAGCGATCATCATCGTTGTTGTCATCATCATCGTCCTCATCATCGTCA
TCATCATCCTCCTCACTGTCATAGTCACTGCTGTCATCCTCCTTATCCTC
GCCGCCATTGTTCAGATTCTCCTCGTCAGCATCTTCCTCAGGCTTCGCGG
TTTCAGTGTTCACCGATCCCTTCATGATCTTCTGCATGCTGCTCAGCCTG
CTCTTGTCTAGCACACTCTTGTCCAGGACACTCAGCAACTTAGCCTCATC
CTCGTTAAGCTTCTTCACGCTTTCCTTCAGACGCTTCTCCAGTTTGGCTT
CGGCACTGTCGGCCTTCTTTTCGT

BO12689.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5820-PA 3156 Gp150-RA 2348..3153 824..19 4030 100 Minus
CG5820-PB 3156 Gp150-RB 2348..3153 824..19 4030 100 Minus
CG5820-PC 3156 Gp150-RC 2348..3153 824..19 4030 100 Minus
CG5820-PD 3231 Gp150-RD 2423..3228 824..19 4030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Gp150-RF 4124 CG5820-RF 2424..3229 824..19 4030 100 Minus
Gp150-RE 4422 CG5820-RE 2722..3527 824..19 4030 100 Minus
Gp150-RD 4190 CG5820-RD 2490..3295 824..19 4030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22327654..22328130 824..348 2385 100 Minus
2R 25286936 2R 22328192..22328521 348..19 1650 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:10:26 has no hits.

BO12689.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:42:59 Download gff for BO12689.3prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-PA 2348..3156 15..824 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:21 Download gff for BO12689.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5820-PD 2423..3231 15..824 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:42:49 Download gff for BO12689.3prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-RD 2490..3299 14..824 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:56 Download gff for BO12689.3prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-RD 2490..3299 14..824 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:56 Download gff for BO12689.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22327654..22328130 348..824 100 -> Minus
2R 22328193..22328525 14..347 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:42:49 Download gff for BO12689.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18215159..18215635 348..824 100 -> Minus
arm_2R 18215698..18216030 14..347 99   Minus

BO12689.5prime Sequence

864 bp (714 high quality bases) assembled on 2006-05-08

> BO12689.5prime
GAAGTTATCAGTCGACATGAGTCGCCAGTCGACTTGCAGGCTAGTCCTGC
TGCTGGCCTTTACCCTGGCCCTAATCCACGCCAGCCACTCAAATACCGTG
GGCCCCAAGATCCACTTCATTCATGACGATCTGACGGAAAACGAGCTGAA
CTCTGGAGAGGAGGTGAGCCCGACCGAGAGTCTGCCCAAAATCTCCACCC
CCAAGGTAAAGGATTTACCCGTGGAGACGACCACCAGGAGCCCCACAAAA
AAAACCACGTCCTCCGGCACCGAGAAGTCCCTTAGCGAGGAGGCTTGGAA
TGATCTGATGGAGGCGGCCAAGCACAGCCAAGCTTTGGCTGATGATCCAC
ACTTCAACAAGATGCTCAATACTACCGTCGCCGCCGGGGAGAAGAACTCC
ACCGATACCGACGATAGCGAATACTATGACTACGATGATGATTACAACTA
TTTCGATGAGGAGACGGTGACGATTTCCCCCAGTCCCAAGAAGGCCAAGA
GCAACCCCAAGCTGCAGCCCATTGTGGATGCCACCATCACGAAGTCCAAG
AGCAAATCCAACGACCAAAAGACCAAAGAGAGTGCTAACGATATCGACAG
CGACTCTCAATATGACTACGACGAGGGTCTGGATGATGATGATGACGAGG
ACGATGCCGCTGACGACCTTTTGACCGATGATGAGCAAGTTGTCTTCAGC
GAGGACGTTCCGTGTCCAAGATTCTGCCAGTGTGCCCGGAATGTCAACAG
CTATCTGGTGGCCACCTGCAGCAGACTTGACATGGGCATCCAAAAGTTTG
GCTCTGACATTACGGATTTGGTTGTGACCAATGTGGGGTCTAAGTACCCC
ATCCTGATGGAACC

BO12689.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5820-PA 3156 Gp150-RA 1..844 17..860 4145 99.6 Plus
CG5820-PB 3156 Gp150-RB 1..844 17..860 4145 99.6 Plus
CG5820-PC 3156 Gp150-RC 1..844 17..860 4145 99.6 Plus
CG5820-PD 3231 Gp150-RD 76..919 17..860 4145 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
Gp150-RF 4124 CG5820-RF 77..924 17..864 4180 99.5 Plus
Gp150-RD 4190 CG5820-RD 143..990 17..864 4180 99.5 Plus
Gp150-RC 4360 CG5820-RC 313..1160 17..864 4180 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22325194..22325727 17..550 2670 100 Plus
2R 25286936 2R 22325781..22326096 549..864 1520 98.7 Plus
Blast to na_te.dros performed 2015-02-12 04:22:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 1958..1986 480..452 109 86.2 Minus

BO12689.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:00 Download gff for BO12689.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-PA 1..848 17..864 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:22 Download gff for BO12689.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5820-PD 69..923 9..864 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:48:21 Download gff for BO12689.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-RC 306..1160 9..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:54 Download gff for BO12689.5prime
Subject Subject Range Query Range Percent Splice Strand
Gp150-RC 306..1160 9..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:54 Download gff for BO12689.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22325187..22325727 9..550 99 -> Plus
2R 22325783..22326096 551..864 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:48:21 Download gff for BO12689.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18212692..18213232 9..550 99 -> Plus
arm_2R 18213288..18213601 551..864 98   Plus

BO12689.pep Sequence

Translation from 16 to 3187

> BO12689.pep
MSRQSTCRLVLLLAFTLALIHASHSNTVGPKIHFIHDDLTENELNSGEEV
SPTESLPKISTPKVKDLPVETTTRSPTKKTTSSGTEKSLSEEAWNDLMEA
AKHSQALADDPHFNKMLNTTVAAGEKNSTDTDDSEYYDYDDDYNYFDEET
VTISPSPKKAKSNPKLQPIVDATITKSKSKSNDQKTKESANDIDSDSQYD
YDEGLDDDDDEDDAADDLLTDDEQVVFSEDVPCPRFCQCARNVNSYLVAT
CSRLDMGIQKFGSDITDLVVTNVGPKYPILMGPNFFQNLGLKNVASIKIA
NCTLEYLHAEAFHGLNELYAVNLTDVGLAIINPDTFVGNKKLRMLTISGN
DLSVMSSIHYLLKSSSIEELDFSRNNLMELNPKAFSHLSNVVYINLSQNS
LKKLPEKAFEKVTLLEELDLSYNSLTELPRDIFNGTTLSILHLKYNTFNG
DLHFGTKDLQQLDLSFNSIVQVHHSMFDKMPGLTNLNLKGNGIKKIQPDS
FLTLKNLRHIDLSINDLDQISGMLFFKNSELDVIRLNDNPRLSQLPTDGF
LSYSGEFTVYYLDISNCAIGPLGHKAFSTMPHLTTLKLAWNNINHLPREI
FTGLHKLIDLDLSNNLITRMDDLIFMDNGELTKLSLAGNPISRLSVRLFL
PLHQLRCLDVNDCELTTLLSDRDLGAGYKIFDSLRSFNASGNLIKKISSE
DVKSFKNLRSLDITNNPLKCTPDFQEFISYVTLQMQMTPKRLPVLANLED
DATIVQLETLAQAGWSSLAHEVCKHAEGSDLLDEKKADSAEAKLEKRLKE
SVKKLNEDEAKLLSVLDKSVLDKSRLSSMQKIMKGSVNTETAKPEEDADE
ENLNNGGEDKEDDSSDYDSEEDDDDDDEDDDDDNNDDDRFEEAKKNAKAK
ADANKAFDTFVNKELKPVLKTDGIQAEEVDMSQETRDKFLLEKLGFDSES
EESDEYTEKMIFHGELSYDLVVPLIVVSFCLLMIVLSIARVIYVVLRKRG
ERYRMALLASKNSFVYQKLSEDIVKPTSKEQKEPKHLKQPKVHRYAPINQ
VASFLDH

BO12689.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gp150-PF 1051 CG5820-PF 1..1051 1..1051 5398 100 Plus
Gp150-PD 1076 CG5820-PD 26..1076 1..1051 5398 100 Plus
Gp150-PC 1051 CG5820-PC 1..1051 1..1051 5398 100 Plus
Gp150-PB 1051 CG5820-PB 1..1051 1..1051 5398 100 Plus
Gp150-PA 1051 CG5820-PA 1..1051 1..1051 5398 100 Plus