Clone Sequence Records
BO12701.3prime Sequence
896 bp (808 high quality bases) assembled on 2006-05-08
> BO12701.3prime
ATGGTCTAGAAAGCTTGCTTGATTACTATACTTTGTGCGTACGGCGACCA
GCTCGTCAAAGAATAGCAGCACAAGGGTTGAGTGGGGGGCAATGCGCAAG
TAGTTGGCCCAGAACCCCTTGTACATACCATAAACGCCCTCTGATCGTAG
GATTTTCACAAAGCAGTCAAGCCAACCGCGATAAAGAAGACCGCGTCCTT
CGGCGTCTACGCCCTGATTGTACAGACGCGTGGTGATTACATCTGGCGGC
GTTATGGCCACCGACATAATGGATCCGGCTATCAAGCCAGCCGAGAAGGA
GTTCAACGTGGGCTGGGTCACCAGATCGTACTGGACCAACAGGGCTTTGG
TCTTACCAAAGGTGGCTATCTGGGCACCTGATCCCAAAGCCGCCCTGGGC
AATGCGGCCACAGATCCTCTCCACAGTCCTCGTACTCCATTCCTGGAGTA
GATCTGACGCAGGGCATCTGTCATGGAAGTATGGGCATGTTGGTAGCCAA
CGGCGATTTGCTTGGCGGCTTGTGATTGCAGCTGAGTTTTGATCAGGAAA
AATGGACTGGAGAAGTAGCACCCCACGACGCCGCCGATGGCGCCCCACAG
TAGTCCCATTCCGTAGGACACCTCACCCTTCCGGTTGTGCATCCACCGCC
TCTCCATTGCCTCCGAATAAATGCTGAGCCGGAAGGAATTGATGATGAAC
TGGAAGTACAAGGCCGGTGCGAGGCCCTTTTGGAGCCCCGTAATGCCATC
ATTTTTGGCCACCGTAATGAAGGCATTGACAATCCCCTTGTAGGGCTCCA
CATAGGTACCCCGTGCCGCCAGCTCGCCCTGCAGCTGGATCCGTGTCTTG
ATCACCTCGATGGGATTGGTGAAGAAGGTGGCCCCCACGGAGGCCA
BO12701.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-PA | 912 | CG8323-RA | 32..909 | 896..19 | 4390 | 100 | Minus |
CG18324-PB | 924 | CG18324-RB | 55..101 | 873..827 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-RA | 1460 | CG8323-RA | 259..1136 | 896..19 | 4390 | 100 | Minus |
CG18327-RB | 998 | CG18327-RB | 97..485 | 875..487 | 280 | 72.4 | Minus |
CG18327-RA | 1064 | CG18327-RA | 163..551 | 875..487 | 280 | 72.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14166138..14166667 | 548..19 | 2635 | 99.8 | Minus |
2R | 25286936 | 2R | 14165309..14165526 | 896..679 | 1090 | 100 | Minus |
2R | 25286936 | 2R | 14165588..14165724 | 680..544 | 685 | 100 | Minus |
2R | 25286936 | 2R | 14168910..14168994 | 873..789 | 260 | 87.1 | Minus |
2R | 25286936 | 2R | 14167144..14167277 | 875..742 | 190 | 76.1 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:44:42 has no hits.
BO12701.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:14 Download gff for
BO12701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-PA | 33..912 | 16..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:40 Download gff for
BO12701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-PA | 33..912 | 16..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:02 Download gff for
BO12701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 260..1136 | 19..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:11 Download gff for
BO12701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 260..1136 | 19..895 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:11 Download gff for
BO12701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14165310..14165525 | 680..895 | 100 | -> | Minus |
2R | 14165589..14165724 | 544..679 | 100 | -> | Minus |
2R | 14166143..14166667 | 19..543 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:02 Download gff for
BO12701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10053094..10053229 | 544..679 | 100 | -> | Minus |
arm_2R | 10052815..10053030 | 680..895 | 100 | -> | Minus |
arm_2R | 10053648..10054172 | 19..543 | 100 | | Minus |
BO12701.5prime Sequence
935 bp (741 high quality bases) assembled on 2006-05-08
> BO12701.5prime
GAAGTTATCAGTCGACATGGCTACATCGGATTTTGTTCTGGGCGGCCTGG
CCTCCGTGGGGGCCACCTTCTTCACCAATCCCATCGAGGTGATCAAGACA
CGGATCCAGCTGCAGGGCGAGCTGGCGGCACGGGGTACCTATGTGGAGCC
CTACAAGGGGATTGTCAATGCCTTCATTACGGTGGCCAAAAATGATGGCA
TTACGGGGCTCCAAAAGGGCCTCGCACCGGCCTTGTACTTCCAGTTCATC
ATCAATTCCTTCCGGCTCAGCATTTATTCGGAGGCAATGGAGAGGCGGTG
GATGCACAACCGGAAGGGTGAGGTGTCCTACGGAATGGGACTACTGTGGG
GCGCCATCGGCGGCGTCGTGGGGTGCTACTTCTCCAGTCCATTTTTCCTG
ATCAAAACTCAGCTGCAATCACAAGCCGCCAAGCAAATCGCCGTTGGCTA
CCAACATGCCCATACTTCCATGACAGATGCCCTGCGTCAGATCTACTCCA
GGAATGGAGTACGAGGACTGTGGAGAGGATCTGTGGCCGCATTGCCCAGG
GCGGCTTTGGGATCAGGTGCCCAGATAGCCACCTTTGGTAAGACCAAAGC
CCTGTTGGTCCAGTACGATCTGGTGACCCAGCCCACGTTGAACTCCTTCT
CGGCTGGCTTGATAGCCGGATCCATTATGTCGGTGGCCATAACGCCGCCA
GATGTAATCACCACGCGTCTGTACAATCAGGGCGTAGACGCCGAAGGACG
CGGTCTTCTTTATCGCGGTTGGCTTGACTGCTTTGTGAAAATCCTACGAT
CAGAGGGCGTTTATGGTATGTACAAGGGGTTCTGGGCCAACTACTTGCGC
ATTGCCCCCCACTCAACCTTTGTGCTGCTATTCTTTGACGAGCTGGTCGC
CGTACGCACAAAGTATAGTAATCAAGCAAGCTTTC
BO12701.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-PA | 912 | CG8323-RA | 1..909 | 17..925 | 4520 | 99.8 | Plus |
CG18324-PB | 924 | CG18324-RB | 55..101 | 71..117 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-RA | 1460 | CG8323-RA | 226..1136 | 15..925 | 4540 | 99.9 | Plus |
CG18327-RB | 998 | CG18327-RB | 45..485 | 17..457 | 360 | 73 | Plus |
CG18327-RA | 1064 | CG18327-RA | 111..551 | 17..457 | 360 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14166138..14166667 | 396..925 | 2620 | 99.6 | Plus |
2R | 25286936 | 2R | 14165276..14165526 | 15..265 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 14165588..14165724 | 264..400 | 685 | 100 | Plus |
2R | 25286936 | 2R | 14167092..14167277 | 17..202 | 270 | 76.3 | Plus |
2R | 25286936 | 2R | 14168910..14168994 | 71..155 | 260 | 87.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:02:26 has no hits.
BO12701.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:15 Download gff for
BO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:42 Download gff for
BO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-PA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:13 Download gff for
BO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 226..1136 | 15..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:19 Download gff for
BO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 226..1136 | 15..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:19 Download gff for
BO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14165276..14165525 | 15..264 | 100 | -> | Plus |
2R | 14165589..14165724 | 265..400 | 100 | -> | Plus |
2R | 14166143..14166667 | 401..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:13 Download gff for
BO12701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10052781..10053030 | 15..264 | 100 | -> | Plus |
arm_2R | 10053094..10053229 | 265..400 | 100 | -> | Plus |
arm_2R | 10053648..10054172 | 401..925 | 99 | | Plus |
BO12701.complete Sequence
943 bp assembled on 2006-10-11
GenBank Submission: FJ632525
> BO12701.complete
GAAGTTATCAGTCGACATGGCTACATCGGATTTTGTTCTGGGCGGCCTGG
CCTCCGTGGGGGCCACCTTCTTCACCAATCCCATCGAGGTGATCAAGACA
CGGATCCAGCTGCAGGGCGAGCTGGCGGCACGGGGTACCTATGTGGAGCC
CTACAAGGGGATTGTCAATGCCTTCATTACGGTGGCCAAAAATGATGGCA
TTACGGGGCTCCAAAAGGGCCTCGCACCGGCCTTGTACTTCCAGTTCATC
ATCAATTCCTTCCGGCTCAGCATTTATTCGGAGGCAATGGAGAGGCGGTG
GATGCACAACCGGAAGGGTGAGGTGTCCTACGGAATGGGACTACTGTGGG
GCGCCATCGGCGGCGTCGTGGGGTGCTACTTCTCCAGTCCATTTTTCCTG
ATCAAAACTCAGCTGCAATCACAAGCCGCCAAGCAAATCGCCGTTGGCTA
CCAACATGCCCATACTTCCATGACAGATGCCCTGCGTCAGATCTACTCCA
GGAATGGAGTACGAGGACTGTGGAGAGGATCTGTGGCCGCATTGCCCAGG
GCGGCTTTGGGATCAGGTGCCCAGATAGCCACCTTTGGTAAGACCAAAGC
CCTGTTGGTCCAGTACGATCTGGTGACCCAGCCCACGTTGAACTCCTTCT
CGGCTGGCTTGATAGCCGGATCCATTATGTCGGTGGCCATAACGCCGCCA
GATGTAATCACCACGCGTCTGTACAATCAGGGCGTAGACGCCGAAGGACG
CGGTCTTCTTTATCGCGGTTGGCTTGACTGCTTTGTGAAAATCCTACGAT
CAGAGGGCGTTTATGGTATGTACAAGGGGTTCTGGGCCAACTACTTGCGC
ATTGCCCCCCACTCAACCCTTGTGCTGCTATTCTTTGACGAGCTGGTCGC
CGTACGCACAAAGTATAGTAATCAAGCAAGCTTTCTAGACCAT
BO12701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-RA | 912 | CG8323-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
CG18327-RB | 915 | CG18327-PB | 1..441 | 17..457 | 360 | 72.1 | Plus |
CG18327-RA | 915 | CG18327-PA | 1..441 | 17..457 | 360 | 72.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-RA | 1460 | CG8323-RA | 226..1136 | 15..925 | 4555 | 100 | Plus |
CG18327-RB | 998 | CG18327-RB | 45..485 | 17..457 | 360 | 72.1 | Plus |
CG18327-RA | 1064 | CG18327-RA | 111..551 | 17..457 | 360 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14166138..14166667 | 396..925 | 2635 | 99.8 | Plus |
2R | 25286936 | 2R | 14165276..14165526 | 15..265 | 1255 | 100 | Plus |
2R | 25286936 | 2R | 14165588..14165724 | 264..400 | 685 | 100 | Plus |
2R | 25286936 | 2R | 14167092..14167277 | 17..202 | 270 | 76.3 | Plus |
2R | 25286936 | 2R | 14168910..14168994 | 71..155 | 260 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:04:07 has no hits.
BO12701.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:03 Download gff for
BO12701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:49 Download gff for
BO12701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 222..1132 | 15..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:51 Download gff for
BO12701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 228..1136 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:03 Download gff for
BO12701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 222..1132 | 15..925 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:55 Download gff for
BO12701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8323-RA | 228..1136 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:55 Download gff for
BO12701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14165278..14165525 | 17..264 | 100 | -> | Plus |
2R | 14165589..14165724 | 265..400 | 100 | -> | Plus |
2R | 14166143..14166667 | 401..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:51 Download gff for
BO12701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10052783..10053030 | 17..264 | 100 | -> | Plus |
arm_2R | 10053094..10053229 | 265..400 | 100 | -> | Plus |
arm_2R | 10053648..10054172 | 401..927 | 99 | | Plus |
BO12701.pep Sequence
Translation from 16 to 943
> BO12701.pep
MATSDFVLGGLASVGATFFTNPIEVIKTRIQLQGELAARGTYVEPYKGIV
NAFITVAKNDGITGLQKGLAPALYFQFIINSFRLSIYSEAMERRWMHNRK
GEVSYGMGLLWGAIGGVVGCYFSSPFFLIKTQLQSQAAKQIAVGYQHAHT
SMTDALRQIYSRNGVRGLWRGSVAALPRAALGSGAQIATFGKTKALLVQY
DLVTQPTLNSFSAGLIAGSIMSVAITPPDVITTRLYNQGVDAEGRGLLYR
GWLDCFVKILRSEGVYGMYKGFWANYLRIAPHSTLVLLFFDELVAVRTKY
SNQASFLDH
BO12701.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8323-PA | 303 | CG8323-PA | 1..303 | 1..303 | 1556 | 100 | Plus |
CG18327-PB | 304 | CG18327-PB | 1..300 | 1..300 | 1146 | 71 | Plus |
CG18327-PA | 304 | CG18327-PA | 1..300 | 1..300 | 1146 | 71 | Plus |
CG18324-PB | 307 | CG18324-PB | 1..300 | 1..300 | 895 | 54.3 | Plus |
CG18324-PA | 199 | CG18324-PA | 1..192 | 109..300 | 558 | 52.6 | Plus |