Clone BO12701 Report

Search the DGRC for BO12701

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG8323-RA
Protein status:BO12701.pep: validated full length
Sequenced Size:943

Clone Sequence Records

BO12701.3prime Sequence

896 bp (808 high quality bases) assembled on 2006-05-08

> BO12701.3prime
ATGGTCTAGAAAGCTTGCTTGATTACTATACTTTGTGCGTACGGCGACCA
GCTCGTCAAAGAATAGCAGCACAAGGGTTGAGTGGGGGGCAATGCGCAAG
TAGTTGGCCCAGAACCCCTTGTACATACCATAAACGCCCTCTGATCGTAG
GATTTTCACAAAGCAGTCAAGCCAACCGCGATAAAGAAGACCGCGTCCTT
CGGCGTCTACGCCCTGATTGTACAGACGCGTGGTGATTACATCTGGCGGC
GTTATGGCCACCGACATAATGGATCCGGCTATCAAGCCAGCCGAGAAGGA
GTTCAACGTGGGCTGGGTCACCAGATCGTACTGGACCAACAGGGCTTTGG
TCTTACCAAAGGTGGCTATCTGGGCACCTGATCCCAAAGCCGCCCTGGGC
AATGCGGCCACAGATCCTCTCCACAGTCCTCGTACTCCATTCCTGGAGTA
GATCTGACGCAGGGCATCTGTCATGGAAGTATGGGCATGTTGGTAGCCAA
CGGCGATTTGCTTGGCGGCTTGTGATTGCAGCTGAGTTTTGATCAGGAAA
AATGGACTGGAGAAGTAGCACCCCACGACGCCGCCGATGGCGCCCCACAG
TAGTCCCATTCCGTAGGACACCTCACCCTTCCGGTTGTGCATCCACCGCC
TCTCCATTGCCTCCGAATAAATGCTGAGCCGGAAGGAATTGATGATGAAC
TGGAAGTACAAGGCCGGTGCGAGGCCCTTTTGGAGCCCCGTAATGCCATC
ATTTTTGGCCACCGTAATGAAGGCATTGACAATCCCCTTGTAGGGCTCCA
CATAGGTACCCCGTGCCGCCAGCTCGCCCTGCAGCTGGATCCGTGTCTTG
ATCACCTCGATGGGATTGGTGAAGAAGGTGGCCCCCACGGAGGCCA

BO12701.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-PA 912 CG8323-RA 32..909 896..19 4390 100 Minus
CG18324-PB 924 CG18324-RB 55..101 873..827 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-RA 1460 CG8323-RA 259..1136 896..19 4390 100 Minus
CG18327-RB 998 CG18327-RB 97..485 875..487 280 72.4 Minus
CG18327-RA 1064 CG18327-RA 163..551 875..487 280 72.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14166138..14166667 548..19 2635 99.8 Minus
2R 25286936 2R 14165309..14165526 896..679 1090 100 Minus
2R 25286936 2R 14165588..14165724 680..544 685 100 Minus
2R 25286936 2R 14168910..14168994 873..789 260 87.1 Minus
2R 25286936 2R 14167144..14167277 875..742 190 76.1 Minus
Blast to na_te.dros performed on 2015-02-01 04:44:42 has no hits.

BO12701.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:14 Download gff for BO12701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8323-PA 33..912 16..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:40 Download gff for BO12701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8323-PA 33..912 16..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:02 Download gff for BO12701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 260..1136 19..895 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:49:11 Download gff for BO12701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 260..1136 19..895 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:49:11 Download gff for BO12701.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14165310..14165525 680..895 100 -> Minus
2R 14165589..14165724 544..679 100 -> Minus
2R 14166143..14166667 19..543 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:02 Download gff for BO12701.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10053094..10053229 544..679 100 -> Minus
arm_2R 10052815..10053030 680..895 100 -> Minus
arm_2R 10053648..10054172 19..543 100   Minus

BO12701.5prime Sequence

935 bp (741 high quality bases) assembled on 2006-05-08

> BO12701.5prime
GAAGTTATCAGTCGACATGGCTACATCGGATTTTGTTCTGGGCGGCCTGG
CCTCCGTGGGGGCCACCTTCTTCACCAATCCCATCGAGGTGATCAAGACA
CGGATCCAGCTGCAGGGCGAGCTGGCGGCACGGGGTACCTATGTGGAGCC
CTACAAGGGGATTGTCAATGCCTTCATTACGGTGGCCAAAAATGATGGCA
TTACGGGGCTCCAAAAGGGCCTCGCACCGGCCTTGTACTTCCAGTTCATC
ATCAATTCCTTCCGGCTCAGCATTTATTCGGAGGCAATGGAGAGGCGGTG
GATGCACAACCGGAAGGGTGAGGTGTCCTACGGAATGGGACTACTGTGGG
GCGCCATCGGCGGCGTCGTGGGGTGCTACTTCTCCAGTCCATTTTTCCTG
ATCAAAACTCAGCTGCAATCACAAGCCGCCAAGCAAATCGCCGTTGGCTA
CCAACATGCCCATACTTCCATGACAGATGCCCTGCGTCAGATCTACTCCA
GGAATGGAGTACGAGGACTGTGGAGAGGATCTGTGGCCGCATTGCCCAGG
GCGGCTTTGGGATCAGGTGCCCAGATAGCCACCTTTGGTAAGACCAAAGC
CCTGTTGGTCCAGTACGATCTGGTGACCCAGCCCACGTTGAACTCCTTCT
CGGCTGGCTTGATAGCCGGATCCATTATGTCGGTGGCCATAACGCCGCCA
GATGTAATCACCACGCGTCTGTACAATCAGGGCGTAGACGCCGAAGGACG
CGGTCTTCTTTATCGCGGTTGGCTTGACTGCTTTGTGAAAATCCTACGAT
CAGAGGGCGTTTATGGTATGTACAAGGGGTTCTGGGCCAACTACTTGCGC
ATTGCCCCCCACTCAACCTTTGTGCTGCTATTCTTTGACGAGCTGGTCGC
CGTACGCACAAAGTATAGTAATCAAGCAAGCTTTC

BO12701.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-PA 912 CG8323-RA 1..909 17..925 4520 99.8 Plus
CG18324-PB 924 CG18324-RB 55..101 71..117 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-RA 1460 CG8323-RA 226..1136 15..925 4540 99.9 Plus
CG18327-RB 998 CG18327-RB 45..485 17..457 360 73 Plus
CG18327-RA 1064 CG18327-RA 111..551 17..457 360 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14166138..14166667 396..925 2620 99.6 Plus
2R 25286936 2R 14165276..14165526 15..265 1255 100 Plus
2R 25286936 2R 14165588..14165724 264..400 685 100 Plus
2R 25286936 2R 14167092..14167277 17..202 270 76.3 Plus
2R 25286936 2R 14168910..14168994 71..155 260 87.1 Plus
Blast to na_te.dros performed on 2015-02-10 21:02:26 has no hits.

BO12701.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:15 Download gff for BO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8323-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:42 Download gff for BO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8323-PA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:45:13 Download gff for BO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 226..1136 15..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:46:19 Download gff for BO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 226..1136 15..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:46:19 Download gff for BO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14165276..14165525 15..264 100 -> Plus
2R 14165589..14165724 265..400 100 -> Plus
2R 14166143..14166667 401..925 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:13 Download gff for BO12701.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10052781..10053030 15..264 100 -> Plus
arm_2R 10053094..10053229 265..400 100 -> Plus
arm_2R 10053648..10054172 401..925 99   Plus

BO12701.complete Sequence

943 bp assembled on 2006-10-11

GenBank Submission: FJ632525

> BO12701.complete
GAAGTTATCAGTCGACATGGCTACATCGGATTTTGTTCTGGGCGGCCTGG
CCTCCGTGGGGGCCACCTTCTTCACCAATCCCATCGAGGTGATCAAGACA
CGGATCCAGCTGCAGGGCGAGCTGGCGGCACGGGGTACCTATGTGGAGCC
CTACAAGGGGATTGTCAATGCCTTCATTACGGTGGCCAAAAATGATGGCA
TTACGGGGCTCCAAAAGGGCCTCGCACCGGCCTTGTACTTCCAGTTCATC
ATCAATTCCTTCCGGCTCAGCATTTATTCGGAGGCAATGGAGAGGCGGTG
GATGCACAACCGGAAGGGTGAGGTGTCCTACGGAATGGGACTACTGTGGG
GCGCCATCGGCGGCGTCGTGGGGTGCTACTTCTCCAGTCCATTTTTCCTG
ATCAAAACTCAGCTGCAATCACAAGCCGCCAAGCAAATCGCCGTTGGCTA
CCAACATGCCCATACTTCCATGACAGATGCCCTGCGTCAGATCTACTCCA
GGAATGGAGTACGAGGACTGTGGAGAGGATCTGTGGCCGCATTGCCCAGG
GCGGCTTTGGGATCAGGTGCCCAGATAGCCACCTTTGGTAAGACCAAAGC
CCTGTTGGTCCAGTACGATCTGGTGACCCAGCCCACGTTGAACTCCTTCT
CGGCTGGCTTGATAGCCGGATCCATTATGTCGGTGGCCATAACGCCGCCA
GATGTAATCACCACGCGTCTGTACAATCAGGGCGTAGACGCCGAAGGACG
CGGTCTTCTTTATCGCGGTTGGCTTGACTGCTTTGTGAAAATCCTACGAT
CAGAGGGCGTTTATGGTATGTACAAGGGGTTCTGGGCCAACTACTTGCGC
ATTGCCCCCCACTCAACCCTTGTGCTGCTATTCTTTGACGAGCTGGTCGC
CGTACGCACAAAGTATAGTAATCAAGCAAGCTTTCTAGACCAT

BO12701.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-RA 912 CG8323-PA 1..909 17..925 4545 100 Plus
CG18327-RB 915 CG18327-PB 1..441 17..457 360 72.1 Plus
CG18327-RA 915 CG18327-PA 1..441 17..457 360 72.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-RA 1460 CG8323-RA 226..1136 15..925 4555 100 Plus
CG18327-RB 998 CG18327-RB 45..485 17..457 360 72.1 Plus
CG18327-RA 1064 CG18327-RA 111..551 17..457 360 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14166138..14166667 396..925 2635 99.8 Plus
2R 25286936 2R 14165276..14165526 15..265 1255 100 Plus
2R 25286936 2R 14165588..14165724 264..400 685 100 Plus
2R 25286936 2R 14167092..14167277 17..202 270 76.3 Plus
2R 25286936 2R 14168910..14168994 71..155 260 87.1 Plus
Blast to na_te.dros performed on 2014-11-28 00:04:07 has no hits.

BO12701.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:03 Download gff for BO12701.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:49 Download gff for BO12701.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 222..1132 15..925 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:51 Download gff for BO12701.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 228..1136 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:03 Download gff for BO12701.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 222..1132 15..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:55 Download gff for BO12701.complete
Subject Subject Range Query Range Percent Splice Strand
CG8323-RA 228..1136 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:55 Download gff for BO12701.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14165278..14165525 17..264 100 -> Plus
2R 14165589..14165724 265..400 100 -> Plus
2R 14166143..14166667 401..927 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:51 Download gff for BO12701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10052783..10053030 17..264 100 -> Plus
arm_2R 10053094..10053229 265..400 100 -> Plus
arm_2R 10053648..10054172 401..927 99   Plus

BO12701.pep Sequence

Translation from 16 to 943

> BO12701.pep
MATSDFVLGGLASVGATFFTNPIEVIKTRIQLQGELAARGTYVEPYKGIV
NAFITVAKNDGITGLQKGLAPALYFQFIINSFRLSIYSEAMERRWMHNRK
GEVSYGMGLLWGAIGGVVGCYFSSPFFLIKTQLQSQAAKQIAVGYQHAHT
SMTDALRQIYSRNGVRGLWRGSVAALPRAALGSGAQIATFGKTKALLVQY
DLVTQPTLNSFSAGLIAGSIMSVAITPPDVITTRLYNQGVDAEGRGLLYR
GWLDCFVKILRSEGVYGMYKGFWANYLRIAPHSTLVLLFFDELVAVRTKY
SNQASFLDH

BO12701.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8323-PA 303 CG8323-PA 1..303 1..303 1556 100 Plus
CG18327-PB 304 CG18327-PB 1..300 1..300 1146 71 Plus
CG18327-PA 304 CG18327-PA 1..300 1..300 1146 71 Plus
CG18324-PB 307 CG18324-PB 1..300 1..300 895 54.3 Plus
CG18324-PA 199 CG18324-PA 1..192 109..300 558 52.6 Plus