Clone BO12704 Report

Search the DGRC for BO12704

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG5872-RA
Protein status:BO12704.pep: validated full length
Sequenced Size:1513

Clone Sequence Records

BO12704.3prime Sequence

910 bp (856 high quality bases) assembled on 2006-05-09

> BO12704.3prime
ATGGTCTAGAAAGCTTGCTCTCTGGTCCCAAAACCGAGTGTCTATCAACA
CTTCGTTGCGTGGATCGCCTTCTGCGAAGGAAACCATGTGTGGATTCCAG
AATCCCGGCGGAGTTGAACTGCGAGCGTCTTCATGCCGGCACTTTGCCAA
ATAATCTTTGATCTTCTCGTCTGTCAGATTTGAACCCATAAAATTGATGA
ACTTTTCGCACTCGACGCACTCAATGTTAAAACGTTCTTTGACCGTCGCC
TCAGGTTCCTCCTTGATCAAAATCGGTCGCGGAAACTCCTCCTCCGAATG
CCTACTATCCTCTTCTTTGATATCCATAAGATACTTTTCAATATCCTCGG
GCAGTTTTGTTGATTCGTTGCCTAAGTCTGTTTCTGGCTGGGATATAGGT
TCCATTTTCACGACTTTGGTAATTGGAATGACGCTCTCAACTTTGGGGGC
ATTTGGTAGGTTTTGCTTCTGCTGGTCAATTATAACCTTCTCGTACTGTC
TTAAAGCACTCGAGCACGTGTCGTCATCGTCCTTCATAATTTCGGCCAGA
ACATCCATGGTGCCCAGTTTGCTCACATCTTCGAGTGTATCATTCACAAA
GATTATATCCTGGGTCGCAGGCGTCAATAAAACTACACTATCCGAGGTGT
TGCTGATCTTTAAACCTGGCGGCGTGTTCGGTGGGGGCATTATCTGATCT
TCCGAGCTGTCCAATTTAAACTCGTCCATGTCCAACTGAAAACTTGGTTT
TATGGTCTTGACTGTGCTATTGCTGGTGGTGGTAAGCGAGTCGTCTGCGT
TTGAACGCTCGTGTTGTCTGTTCTCTGCATTAAAGATCTCGGCGGCCTAG
ATCTCTTCAGATTGGTGCTCAAATTGGGACTCTCCTCTATGACTTCTTTT
TCACTGGTGC

BO12704.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-PA 1482 CG5872-RA 693..1479 805..19 3910 99.8 Minus
CG5872-PA 1482 CG5872-RA 587..693 910..804 510 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-RA 1859 CG5872-RA 719..1611 910..19 4410 99.7 Minus
CG5872-RB 1866 CG5872-RB 719..1618 910..19 4330 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20437252..20437875 824..202 3055 99.7 Minus
3L 28110227 3L 20437938..20438122 203..19 925 100 Minus
3L 28110227 3L 20437025..20437112 910..823 425 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 22:09:09 has no hits.

BO12704.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:16 Download gff for BO12704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5872-PA 587..1482 15..910 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:43 Download gff for BO12704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5872-PA 587..1482 15..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:07 Download gff for BO12704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 719..1614 15..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:31 Download gff for BO12704.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 719..1614 15..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:31 Download gff for BO12704.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20437025..20437112 823..910 98 -> Minus
3L 20437254..20437875 202..822 99 -> Minus
3L 20437940..20438125 15..201 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:07 Download gff for BO12704.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20430125..20430212 823..910 98 -> Minus
arm_3L 20430354..20430975 202..822 99 -> Minus
arm_3L 20431040..20431225 15..201 98   Minus

BO12704.5prime Sequence

896 bp (818 high quality bases) assembled on 2006-05-08

> BO12704.5prime
GAAGTTATCAGTCGACATGACGTGCGGAAAATGTCGCGGTCACAAGGAAA
GGAGCGTGAAGTGCCTTTTAGCCGCTTTGGACACAATCAAAGAGCACGCC
TTAATGATGCAACGAGACTCAGAGGAAAGTTCGAGGACCATAGAACAGCT
AAAGATCCACAATGAAAAGCTGCACAAGGCCTTGGACTTGCTGAAGGAGC
GGCAGGCATCCTTGGTCCAGGCGGAGAAGCGCAGGAAGCTGTTGCCCACG
AAGATCAAGGATGACATATCGCCGCAGACACAAAGCCAAAACTCCCTTAA
CATGAACATAGCCATTAGCAACATAGATCTATCCGACGAGGACCAGGAAG
TGGAGGAAGACGAGAGCATTACCGAAACGGAGACCACTGTCCTCAGCCCG
CGCAAACTACGATTGCCAAGTCGAAAGTCGGACATCCGGGATCTGGAGAA
TGTGCAGCCGAGCAATGTTTCTGCGGTGGGAAATAGTTGGACCCGCAAGA
CACCCAAGAATCAGGGAGTCCTTACAAAGCTATCACTCACACACAAGAGC
AACAACTTGAACTTGAAGCAAACTCGCCTTAAATTCGAAGCAAATAGGAC
GAGCACCAGTGAAAAGGAAGTCATAGAGGAGAGTCCCAATTTGAGCACCA
ATCTGAAGAGATCTAGGCCGCCGAGATCTTTAATGCAGAGAACAGACAAC
ACGAGCGTTTCAAACGCAGACGACTCGCTTACCACCACCAGCAATAGCAC
AGTCAAGACCATAAAACCAAGTTTTCAGTTGGACATGGACGAGTTTAAAT
TGGACAGCTCGGAAGATCAGATAATGCCCCCACCGAACACGCCGCCAGGT
TTAAAGATCAGCAACACCTCGGATAGTGTAGTTTTATTGACGCCTG

BO12704.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-PA 1482 CG5872-RA 1..880 17..896 4400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-RA 1859 CG5872-RA 133..1012 17..896 4400 100 Plus
CG5872-RB 1866 CG5872-RB 133..1019 17..896 4320 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20436527..20437112 105..690 2930 100 Plus
3L 28110227 3L 20437252..20437459 689..896 1040 100 Plus
3L 28110227 3L 20436382..20436469 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:42:28 has no hits.

BO12704.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:18 Download gff for BO12704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5872-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:44 Download gff for BO12704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5872-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:00 Download gff for BO12704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 133..1012 17..896 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:05 Download gff for BO12704.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 133..1012 17..896 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:05 Download gff for BO12704.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20436382..20436469 17..104 100 -> Plus
3L 20436527..20437112 105..690 100 -> Plus
3L 20437254..20437459 691..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:00 Download gff for BO12704.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20429482..20429569 17..104 100 -> Plus
arm_3L 20429627..20430212 105..690 100 -> Plus
arm_3L 20430354..20430559 691..896 100   Plus

BO12704.complete Sequence

1513 bp assembled on 2006-10-11

GenBank Submission: FJ632526

> BO12704.complete
GAAGTTATCAGTCGACATGACGTGCGGAAAATGTCGCGGTCACAAGGAAA
GGAGCGTGAAGTGCCTTTTAGCCGCTTTGGACACAATCAAAGAGCACGCC
TTAATGATGCAACGAGACTCAGAGGAAAGTTCGAGGACCATAGAACAGCT
AAAGATCCACAATGAAAAGCTGCACAAGGCCTTGGACTTGCTGAAGGAGC
GGCAGGCATCCTTGGTCCAGGCGGAGAAGCGCAGGAAGCTGTTGCCCACG
AAGATCAAGGATGACATATCGCCGCAGACACAAAGCCAAAACTCCCTTAA
CATGAACATAGCCATTAGCAACATAGATCTATCCGACGAGGACCAGGAAG
TGGAGGAAGACGAGAGCATTACCGAAACGGAGACCACTGTCCTCAGCCCG
CGCAAACTACGATTGCCAAGTCGAAAGTCGGACATCCGGGATCTGGAGAA
TGTGCAGCCGAGCAATGTTTCTGCGGTGGGAAATAGTTGGACCCGCAAGA
CACCCAAGAATCAGGGAGTCCTTACAAAGCTATCACTCACACACAAGAGC
AACAACTTGAACTTGAAGCAAACTCGCCTTAAATTCGAAGCAAATAGGAC
GAGCACCAGTGAAAAGGAAGTCATAGAGGAGAGTCCCAATTTGAGCACCA
ATCTGAAGAGATCTAGGCCGCCGAGATCTTTAATGCAGAGAACAGACAAC
ACGAGCGTTTCAAACGCAGACGACTCGCTTACCACCACCAGCAATAGCAC
AGTCAAGACCATAAAACCAAGTTTTCAGTTGGACATGGACGAGTTTAAAT
TGGACAGCTCGGAAGATCAGATAATGCCCCCACCGAACACGCCGCCAGGT
TTAAAGATCAGCAACACCTCGGATAGTGTAGTTTTATTGACGCCTGCGAC
CCAGGATATAATCTTTGTGAATGATACACTCGAAGATGTGAGCAAACTGG
GCACCATGGATGTTCTGGCCGAAATTATGAAGGACGATGACGACACGTGC
TCGAGTGCTTTAAGACAGTACGAGAAGGTTATAATTGACCAGCAGAAGCA
AAACCTACCAAATGCCCCCAAAGTTGAGAGCGTCATTCCAATTACCAAAG
TCGTGAAAATGGAACCTATATCCCAGCCAGAAACAGACTTAGGCAACGAA
TCAACAAAACTGCCCGAGGATATTGAAAAGTATCTTATGGATATCAAAGA
AGAGGATAGTAGGCATTCGGAGGAGGAGTTTCCGCGACCGATTTTGATCA
AGGAGGAACCTGAGGCGACGGTCAAAGAACGTTTTAACATTGAGTGCGTC
GAGTGCGAAAAGTTCATCAATTTTATGGGTTCAAATCTGACAGACGAGAA
GATCAAAGATTATTTGGCAAAGTGCCGGCATGAAGACGCTCGCAGTTCAA
CTCCGCCGGGATTCTGGAATCCACACATGGTTTCCTTCGCAGAAGGCGAT
CCACGCAACGAAGTGTTGATAGACACTCGGTTTTGGGACCAGAGAGCAAG
CTTTCTAGACCAT

BO12704.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-RA 1482 CG5872-PA 1..1479 17..1495 7380 99.9 Plus
CG5872-RB 738 CG5872-PB 1..738 17..747 3550 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-RA 1859 CG5872-RA 133..1611 17..1495 7380 99.9 Plus
CG5872-RB 1866 CG5872-RB 133..1618 17..1495 7275 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20437252..20437875 689..1312 3105 99.8 Plus
3L 28110227 3L 20436527..20437112 105..690 2930 100 Plus
3L 28110227 3L 20437938..20438122 1311..1495 925 100 Plus
3L 28110227 3L 20436382..20436469 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:03:23 has no hits.

BO12704.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:04 Download gff for BO12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 1..1482 17..1499 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:51 Download gff for BO12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 126..1607 17..1499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:07 Download gff for BO12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 133..1611 17..1497 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:04 Download gff for BO12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 126..1607 17..1499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:47 Download gff for BO12704.complete
Subject Subject Range Query Range Percent Splice Strand
CG5872-RA 133..1611 17..1497 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:47 Download gff for BO12704.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20436382..20436469 17..104 100 -> Plus
3L 20436527..20437112 105..690 100 -> Plus
3L 20437254..20437875 691..1312 99 -> Plus
3L 20437940..20438122 1313..1497 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:07 Download gff for BO12704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20429482..20429569 17..104 100 -> Plus
arm_3L 20429627..20430212 105..690 100 -> Plus
arm_3L 20430354..20430975 691..1312 99 -> Plus
arm_3L 20431040..20431222 1313..1497 98   Plus

BO12704.pep Sequence

Translation from 16 to 1513

> BO12704.pep
MTCGKCRGHKERSVKCLLAALDTIKEHALMMQRDSEESSRTIEQLKIHNE
KLHKALDLLKERQASLVQAEKRRKLLPTKIKDDISPQTQSQNSLNMNIAI
SNIDLSDEDQEVEEDESITETETTVLSPRKLRLPSRKSDIRDLENVQPSN
VSAVGNSWTRKTPKNQGVLTKLSLTHKSNNLNLKQTRLKFEANRTSTSEK
EVIEESPNLSTNLKRSRPPRSLMQRTDNTSVSNADDSLTTTSNSTVKTIK
PSFQLDMDEFKLDSSEDQIMPPPNTPPGLKISNTSDSVVLLTPATQDIIF
VNDTLEDVSKLGTMDVLAEIMKDDDDTCSSALRQYEKVIIDQQKQNLPNA
PKVESVIPITKVVKMEPISQPETDLGNESTKLPEDIEKYLMDIKEEDSRH
SEEEFPRPILIKEEPEATVKERFNIECVECEKFINFMGSNLTDEKIKDYL
AKCRHEDARSSTPPGFWNPHMVSFAEGDPRNEVLIDTRFWDQRASFLDH

BO12704.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5872-PA 493 CG5872-PA 1..493 1..493 2521 100 Plus
CG5872-PB 245 CG5872-PB 1..228 1..228 1131 99.1 Plus