Clone Sequence Records
BO12704.3prime Sequence
910 bp (856 high quality bases) assembled on 2006-05-09
> BO12704.3prime
ATGGTCTAGAAAGCTTGCTCTCTGGTCCCAAAACCGAGTGTCTATCAACA
CTTCGTTGCGTGGATCGCCTTCTGCGAAGGAAACCATGTGTGGATTCCAG
AATCCCGGCGGAGTTGAACTGCGAGCGTCTTCATGCCGGCACTTTGCCAA
ATAATCTTTGATCTTCTCGTCTGTCAGATTTGAACCCATAAAATTGATGA
ACTTTTCGCACTCGACGCACTCAATGTTAAAACGTTCTTTGACCGTCGCC
TCAGGTTCCTCCTTGATCAAAATCGGTCGCGGAAACTCCTCCTCCGAATG
CCTACTATCCTCTTCTTTGATATCCATAAGATACTTTTCAATATCCTCGG
GCAGTTTTGTTGATTCGTTGCCTAAGTCTGTTTCTGGCTGGGATATAGGT
TCCATTTTCACGACTTTGGTAATTGGAATGACGCTCTCAACTTTGGGGGC
ATTTGGTAGGTTTTGCTTCTGCTGGTCAATTATAACCTTCTCGTACTGTC
TTAAAGCACTCGAGCACGTGTCGTCATCGTCCTTCATAATTTCGGCCAGA
ACATCCATGGTGCCCAGTTTGCTCACATCTTCGAGTGTATCATTCACAAA
GATTATATCCTGGGTCGCAGGCGTCAATAAAACTACACTATCCGAGGTGT
TGCTGATCTTTAAACCTGGCGGCGTGTTCGGTGGGGGCATTATCTGATCT
TCCGAGCTGTCCAATTTAAACTCGTCCATGTCCAACTGAAAACTTGGTTT
TATGGTCTTGACTGTGCTATTGCTGGTGGTGGTAAGCGAGTCGTCTGCGT
TTGAACGCTCGTGTTGTCTGTTCTCTGCATTAAAGATCTCGGCGGCCTAG
ATCTCTTCAGATTGGTGCTCAAATTGGGACTCTCCTCTATGACTTCTTTT
TCACTGGTGC
BO12704.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5872-PA | 1482 | CG5872-RA | 693..1479 | 805..19 | 3910 | 99.8 | Minus |
CG5872-PA | 1482 | CG5872-RA | 587..693 | 910..804 | 510 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5872-RA | 1859 | CG5872-RA | 719..1611 | 910..19 | 4410 | 99.7 | Minus |
CG5872-RB | 1866 | CG5872-RB | 719..1618 | 910..19 | 4330 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20437252..20437875 | 824..202 | 3055 | 99.7 | Minus |
3L | 28110227 | 3L | 20437938..20438122 | 203..19 | 925 | 100 | Minus |
3L | 28110227 | 3L | 20437025..20437112 | 910..823 | 425 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:09:09 has no hits.
BO12704.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:16 Download gff for
BO12704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-PA | 587..1482 | 15..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:43 Download gff for
BO12704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-PA | 587..1482 | 15..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:07 Download gff for
BO12704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 719..1614 | 15..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:31 Download gff for
BO12704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 719..1614 | 15..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:31 Download gff for
BO12704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20437025..20437112 | 823..910 | 98 | -> | Minus |
3L | 20437254..20437875 | 202..822 | 99 | -> | Minus |
3L | 20437940..20438125 | 15..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:07 Download gff for
BO12704.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20430125..20430212 | 823..910 | 98 | -> | Minus |
arm_3L | 20430354..20430975 | 202..822 | 99 | -> | Minus |
arm_3L | 20431040..20431225 | 15..201 | 98 | | Minus |
BO12704.5prime Sequence
896 bp (818 high quality bases) assembled on 2006-05-08
> BO12704.5prime
GAAGTTATCAGTCGACATGACGTGCGGAAAATGTCGCGGTCACAAGGAAA
GGAGCGTGAAGTGCCTTTTAGCCGCTTTGGACACAATCAAAGAGCACGCC
TTAATGATGCAACGAGACTCAGAGGAAAGTTCGAGGACCATAGAACAGCT
AAAGATCCACAATGAAAAGCTGCACAAGGCCTTGGACTTGCTGAAGGAGC
GGCAGGCATCCTTGGTCCAGGCGGAGAAGCGCAGGAAGCTGTTGCCCACG
AAGATCAAGGATGACATATCGCCGCAGACACAAAGCCAAAACTCCCTTAA
CATGAACATAGCCATTAGCAACATAGATCTATCCGACGAGGACCAGGAAG
TGGAGGAAGACGAGAGCATTACCGAAACGGAGACCACTGTCCTCAGCCCG
CGCAAACTACGATTGCCAAGTCGAAAGTCGGACATCCGGGATCTGGAGAA
TGTGCAGCCGAGCAATGTTTCTGCGGTGGGAAATAGTTGGACCCGCAAGA
CACCCAAGAATCAGGGAGTCCTTACAAAGCTATCACTCACACACAAGAGC
AACAACTTGAACTTGAAGCAAACTCGCCTTAAATTCGAAGCAAATAGGAC
GAGCACCAGTGAAAAGGAAGTCATAGAGGAGAGTCCCAATTTGAGCACCA
ATCTGAAGAGATCTAGGCCGCCGAGATCTTTAATGCAGAGAACAGACAAC
ACGAGCGTTTCAAACGCAGACGACTCGCTTACCACCACCAGCAATAGCAC
AGTCAAGACCATAAAACCAAGTTTTCAGTTGGACATGGACGAGTTTAAAT
TGGACAGCTCGGAAGATCAGATAATGCCCCCACCGAACACGCCGCCAGGT
TTAAAGATCAGCAACACCTCGGATAGTGTAGTTTTATTGACGCCTG
BO12704.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5872-PA | 1482 | CG5872-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5872-RA | 1859 | CG5872-RA | 133..1012 | 17..896 | 4400 | 100 | Plus |
CG5872-RB | 1866 | CG5872-RB | 133..1019 | 17..896 | 4320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20436527..20437112 | 105..690 | 2930 | 100 | Plus |
3L | 28110227 | 3L | 20437252..20437459 | 689..896 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 20436382..20436469 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:42:28 has no hits.
BO12704.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:18 Download gff for
BO12704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:44 Download gff for
BO12704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:00 Download gff for
BO12704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 133..1012 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:05 Download gff for
BO12704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 133..1012 | 17..896 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:05 Download gff for
BO12704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20436382..20436469 | 17..104 | 100 | -> | Plus |
3L | 20436527..20437112 | 105..690 | 100 | -> | Plus |
3L | 20437254..20437459 | 691..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:00 Download gff for
BO12704.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20429482..20429569 | 17..104 | 100 | -> | Plus |
arm_3L | 20429627..20430212 | 105..690 | 100 | -> | Plus |
arm_3L | 20430354..20430559 | 691..896 | 100 | | Plus |
BO12704.complete Sequence
1513 bp assembled on 2006-10-11
GenBank Submission: FJ632526
> BO12704.complete
GAAGTTATCAGTCGACATGACGTGCGGAAAATGTCGCGGTCACAAGGAAA
GGAGCGTGAAGTGCCTTTTAGCCGCTTTGGACACAATCAAAGAGCACGCC
TTAATGATGCAACGAGACTCAGAGGAAAGTTCGAGGACCATAGAACAGCT
AAAGATCCACAATGAAAAGCTGCACAAGGCCTTGGACTTGCTGAAGGAGC
GGCAGGCATCCTTGGTCCAGGCGGAGAAGCGCAGGAAGCTGTTGCCCACG
AAGATCAAGGATGACATATCGCCGCAGACACAAAGCCAAAACTCCCTTAA
CATGAACATAGCCATTAGCAACATAGATCTATCCGACGAGGACCAGGAAG
TGGAGGAAGACGAGAGCATTACCGAAACGGAGACCACTGTCCTCAGCCCG
CGCAAACTACGATTGCCAAGTCGAAAGTCGGACATCCGGGATCTGGAGAA
TGTGCAGCCGAGCAATGTTTCTGCGGTGGGAAATAGTTGGACCCGCAAGA
CACCCAAGAATCAGGGAGTCCTTACAAAGCTATCACTCACACACAAGAGC
AACAACTTGAACTTGAAGCAAACTCGCCTTAAATTCGAAGCAAATAGGAC
GAGCACCAGTGAAAAGGAAGTCATAGAGGAGAGTCCCAATTTGAGCACCA
ATCTGAAGAGATCTAGGCCGCCGAGATCTTTAATGCAGAGAACAGACAAC
ACGAGCGTTTCAAACGCAGACGACTCGCTTACCACCACCAGCAATAGCAC
AGTCAAGACCATAAAACCAAGTTTTCAGTTGGACATGGACGAGTTTAAAT
TGGACAGCTCGGAAGATCAGATAATGCCCCCACCGAACACGCCGCCAGGT
TTAAAGATCAGCAACACCTCGGATAGTGTAGTTTTATTGACGCCTGCGAC
CCAGGATATAATCTTTGTGAATGATACACTCGAAGATGTGAGCAAACTGG
GCACCATGGATGTTCTGGCCGAAATTATGAAGGACGATGACGACACGTGC
TCGAGTGCTTTAAGACAGTACGAGAAGGTTATAATTGACCAGCAGAAGCA
AAACCTACCAAATGCCCCCAAAGTTGAGAGCGTCATTCCAATTACCAAAG
TCGTGAAAATGGAACCTATATCCCAGCCAGAAACAGACTTAGGCAACGAA
TCAACAAAACTGCCCGAGGATATTGAAAAGTATCTTATGGATATCAAAGA
AGAGGATAGTAGGCATTCGGAGGAGGAGTTTCCGCGACCGATTTTGATCA
AGGAGGAACCTGAGGCGACGGTCAAAGAACGTTTTAACATTGAGTGCGTC
GAGTGCGAAAAGTTCATCAATTTTATGGGTTCAAATCTGACAGACGAGAA
GATCAAAGATTATTTGGCAAAGTGCCGGCATGAAGACGCTCGCAGTTCAA
CTCCGCCGGGATTCTGGAATCCACACATGGTTTCCTTCGCAGAAGGCGAT
CCACGCAACGAAGTGTTGATAGACACTCGGTTTTGGGACCAGAGAGCAAG
CTTTCTAGACCAT
BO12704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5872-RA | 1482 | CG5872-PA | 1..1479 | 17..1495 | 7380 | 99.9 | Plus |
CG5872-RB | 738 | CG5872-PB | 1..738 | 17..747 | 3550 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5872-RA | 1859 | CG5872-RA | 133..1611 | 17..1495 | 7380 | 99.9 | Plus |
CG5872-RB | 1866 | CG5872-RB | 133..1618 | 17..1495 | 7275 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20437252..20437875 | 689..1312 | 3105 | 99.8 | Plus |
3L | 28110227 | 3L | 20436527..20437112 | 105..690 | 2930 | 100 | Plus |
3L | 28110227 | 3L | 20437938..20438122 | 1311..1495 | 925 | 100 | Plus |
3L | 28110227 | 3L | 20436382..20436469 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:03:23 has no hits.
BO12704.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:04 Download gff for
BO12704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 1..1482 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:51 Download gff for
BO12704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 126..1607 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:07 Download gff for
BO12704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 133..1611 | 17..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:04 Download gff for
BO12704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 126..1607 | 17..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:47 Download gff for
BO12704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5872-RA | 133..1611 | 17..1497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:47 Download gff for
BO12704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20436382..20436469 | 17..104 | 100 | -> | Plus |
3L | 20436527..20437112 | 105..690 | 100 | -> | Plus |
3L | 20437254..20437875 | 691..1312 | 99 | -> | Plus |
3L | 20437940..20438122 | 1313..1497 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:07 Download gff for
BO12704.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20429482..20429569 | 17..104 | 100 | -> | Plus |
arm_3L | 20429627..20430212 | 105..690 | 100 | -> | Plus |
arm_3L | 20430354..20430975 | 691..1312 | 99 | -> | Plus |
arm_3L | 20431040..20431222 | 1313..1497 | 98 | | Plus |
BO12704.pep Sequence
Translation from 16 to 1513
> BO12704.pep
MTCGKCRGHKERSVKCLLAALDTIKEHALMMQRDSEESSRTIEQLKIHNE
KLHKALDLLKERQASLVQAEKRRKLLPTKIKDDISPQTQSQNSLNMNIAI
SNIDLSDEDQEVEEDESITETETTVLSPRKLRLPSRKSDIRDLENVQPSN
VSAVGNSWTRKTPKNQGVLTKLSLTHKSNNLNLKQTRLKFEANRTSTSEK
EVIEESPNLSTNLKRSRPPRSLMQRTDNTSVSNADDSLTTTSNSTVKTIK
PSFQLDMDEFKLDSSEDQIMPPPNTPPGLKISNTSDSVVLLTPATQDIIF
VNDTLEDVSKLGTMDVLAEIMKDDDDTCSSALRQYEKVIIDQQKQNLPNA
PKVESVIPITKVVKMEPISQPETDLGNESTKLPEDIEKYLMDIKEEDSRH
SEEEFPRPILIKEEPEATVKERFNIECVECEKFINFMGSNLTDEKIKDYL
AKCRHEDARSSTPPGFWNPHMVSFAEGDPRNEVLIDTRFWDQRASFLDH
BO12704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5872-PA | 493 | CG5872-PA | 1..493 | 1..493 | 2521 | 100 | Plus |
CG5872-PB | 245 | CG5872-PB | 1..228 | 1..228 | 1131 | 99.1 | Plus |