Clone BO12708 Report

Search the DGRC for BO12708

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG9894-RA
Protein status:BO12708.pep: validated full length
Sequenced Size:490

Clone Sequence Records

BO12708.3prime Sequence

488 bp (487 high quality bases) assembled on 2006-05-09

> BO12708.3prime
ATGGTCTAGAAAGCTTGCCGCCTGATCGTCCGAGCCGGAACCGTCATCAT
TATCATCATCATCATCATCACATTCAATGTCATCCTCCTCACCATCGTAG
GGGATGTCGTACTCGTCGCTCTCGATTTCACTGTCGCCCTCGATGATTTC
CTCCAGAGCCTCTTCCTCATCGGAATCTCCATCGGCGGCCGCGGCCTTCT
TGGCCTTCTTTGATTCTGCGGATTTGGCTTCTGCTGGCCTCTTGGTGCCT
TTCACGGATTCCTTTGCGGGGGCAGCGGCGGCGGCATCGGCGGCATCCTC
GCCGTCCTTTGACGTACCGTTGTCGGCCGCGTCGCCGGCGGCATCGGCAG
CAGCGGCCTTATCCTCGGCGGCCGCCTTCGCCTTGAGATCGTCCTTGACA
GCAGACACATCATCTGCCGCCACCTTCTCCACGGCCACATCGCCGTTGTT
CTGTTGTTCCGTAGCAGCCGACATGTCGACTGATAACT

BO12708.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9894-PB 459 CG9894-RB 1..456 474..19 2280 100 Minus
CG9894-PA 459 CG9894-RA 1..456 474..19 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Bacc-RD 2524 CG9894-RD 440..895 474..19 2280 100 Minus
Bacc-RC 2221 CG9894-RC 82..537 474..19 2280 100 Minus
Bacc-RA 1010 CG9894-RA 183..638 474..19 2280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2753415..2753661 474..228 1235 100 Minus
2L 23513712 2L 2756008..2756174 228..62 820 99.4 Minus
2L 23513712 2L 2756244..2756291 66..19 240 100 Minus
Blast to na_te.dros performed 2015-02-08 12:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1161..1230 273..208 106 65.7 Minus

BO12708.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:25 Download gff for BO12708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9894-PA 1..459 15..474 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:55 Download gff for BO12708.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9894-PA 1..459 15..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:28 Download gff for BO12708.3prime
Subject Subject Range Query Range Percent Splice Strand
Bacc-RA 183..641 15..474 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:15 Download gff for BO12708.3prime
Subject Subject Range Query Range Percent Splice Strand
Bacc-RA 183..641 15..474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:15 Download gff for BO12708.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2756245..2756294 15..65 96   Minus
2L 2753415..2753660 229..474 100 -> Minus
2L 2756008..2756170 66..228 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:28 Download gff for BO12708.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2753415..2753660 229..474 100 -> Minus
arm_2L 2756008..2756170 66..228 100 -> Minus
arm_2L 2756245..2756294 15..65 96   Minus

BO12708.5prime Sequence

488 bp (487 high quality bases) assembled on 2006-05-08

> BO12708.5prime
GAAGTTATCAGTCGACATGTCGGCTGCTACGGAACAACAGAACAACGGCG
ATGTGGCCGTGGAGAAGGTGGCGGCAGATGATGTGTCTGCTGTCAAGGAC
GATCTCAAGGCGAAGGCGGCCGCCGAGGATAAGGCCGCTGCTGCCGATGC
CGCCGGCGACGCGGCCGACAACGGTACGTCAAAGGACGGCGAGGATGCCG
CCGATGCCGCCGCCGCTGCCCCCGCAAAGGAATCCGTGAAAGGCACCAAG
AGGCCAGCAGAAGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGC
GGCCGCCGATGGAGATTCCGATGAGGAAGAGGCTCTGGAGGAAATCATCG
AGGGCGACAGTGAAATCGAGAGCGACGAGTACGACATCCCCTACGATGGT
GAGGAGGATGACATTGAATGTGATGATGATGATGATGATAATGATGACGG
TTCCGGCTCGGACGATCAGGCGGCAAGCTTTCTAGACC

BO12708.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9894-PB 459 CG9894-RB 1..456 17..472 2280 100 Plus
CG9894-PA 459 CG9894-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Bacc-RD 2524 CG9894-RD 440..895 17..472 2280 100 Plus
Bacc-RC 2221 CG9894-RC 82..537 17..472 2280 100 Plus
Bacc-RA 1010 CG9894-RA 183..638 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2753415..2753661 17..263 1235 100 Plus
2L 23513712 2L 2756008..2756174 263..429 820 99.4 Plus
2L 23513712 2L 2756244..2756291 425..472 240 100 Plus
Blast to na_te.dros performed 2015-02-11 13:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1161..1230 218..283 106 65.7 Plus

BO12708.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:26 Download gff for BO12708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9894-PA 1..459 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:57 Download gff for BO12708.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9894-PA 1..459 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:16:24 Download gff for BO12708.5prime
Subject Subject Range Query Range Percent Splice Strand
Bacc-RA 183..641 17..476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:26 Download gff for BO12708.5prime
Subject Subject Range Query Range Percent Splice Strand
Bacc-RA 183..641 17..476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:26 Download gff for BO12708.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2753415..2753660 17..262 100 -> Plus
2L 2756008..2756170 263..425 100 -> Plus
2L 2756245..2756294 426..476 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:16:24 Download gff for BO12708.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2753415..2753660 17..262 100 -> Plus
arm_2L 2756008..2756170 263..425 100 -> Plus
arm_2L 2756245..2756294 426..476 96   Plus

BO12708.complete Sequence

490 bp assembled on 2006-10-11

GenBank Submission: FJ632527

> BO12708.complete
GAAGTTATCAGTCGACATGTCGGCTGCTACGGAACAACAGAACAACGGCG
ATGTGGCCGTGGAGAAGGTGGCGGCAGATGATGTGTCTGCTGTCAAGGAC
GATCTCAAGGCGAAGGCGGCCGCCGAGGATAAGGCCGCTGCTGCCGATGC
CGCCGGCGACGCGGCCGACAACGGTACGTCAAAGGACGGCGAGGATGCCG
CCGATGCCGCCGCCGCTGCCCCCGCAAAGGAATCCGTGAAAGGCACCAAG
AGGCCAGCAGAAGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGC
GGCCGCCGATGGAGATTCCGATGAGGAAGAGGCTCTGGAGGAAATCATCG
AGGGCGACAGTGAAATCGAGAGCGACGAGTACGACATCCCCTACGATGGT
GAGGAGGATGACATTGAATGTGATGATGATGATGATGATAATGATGACGG
TTCCGGCTCGGACGATCAGGCGGCAAGCTTTCTAGACCAT

BO12708.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Bacc-RD 459 CG9894-PD 1..456 17..472 2280 100 Plus
Bacc-RC 459 CG9894-PC 1..456 17..472 2280 100 Plus
Bacc-RA 459 CG9894-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
Bacc-RD 2524 CG9894-RD 440..895 17..472 2280 100 Plus
Bacc-RC 2221 CG9894-RC 82..537 17..472 2280 100 Plus
Bacc-RA 1010 CG9894-RA 183..638 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2753415..2753661 17..263 1235 100 Plus
2L 23513712 2L 2756008..2756174 263..429 820 99.4 Plus
2L 23513712 2L 2756244..2756291 425..472 240 100 Plus
Blast to na_te.dros performed 2014-11-28 00:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1c 5443 Rt1c RT1C 5443bp 1161..1230 218..283 106 65.7 Plus

BO12708.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:05 Download gff for BO12708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9894-RA 1..459 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:52 Download gff for BO12708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9894-RA 182..640 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:47 Download gff for BO12708.complete
Subject Subject Range Query Range Percent Splice Strand
Bacc-RA 183..638 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:05 Download gff for BO12708.complete
Subject Subject Range Query Range Percent Splice Strand
CG9894-RA 182..640 17..476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:36 Download gff for BO12708.complete
Subject Subject Range Query Range Percent Splice Strand
Bacc-RA 183..638 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:36 Download gff for BO12708.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2753415..2753660 17..262 100 -> Plus
2L 2756008..2756170 263..425 100 -> Plus
2L 2756245..2756291 426..474 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:47 Download gff for BO12708.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2753415..2753660 17..262 100 -> Plus
arm_2L 2756008..2756170 263..425 100 -> Plus
arm_2L 2756245..2756291 426..474 95   Plus

BO12708.pep Sequence

Translation from 16 to 490

> BO12708.pep
MSAATEQQNNGDVAVEKVAADDVSAVKDDLKAKAAAEDKAAAADAAGDAA
DNGTSKDGEDAADAAAAAPAKESVKGTKRPAEAKSAESKKAKKAAAADGD
SDEEEALEEIIEGDSEIESDEYDIPYDGEEDDIECDDDDDDNDDGSGSDD
QAASFLDH

BO12708.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Bacc-PD 152 CG9894-PD 1..152 1..152 759 100 Plus
Bacc-PC 152 CG9894-PC 1..152 1..152 759 100 Plus
Bacc-PA 152 CG9894-PA 1..152 1..152 759 100 Plus
Bacc-PB 152 CG9894-PB 1..152 1..152 759 100 Plus
CG13096-PB 681 CG13096-PB 552..675 20..150 156 35.9 Plus