Clone Sequence Records
BO12708.3prime Sequence
488 bp (487 high quality bases) assembled on 2006-05-09
> BO12708.3prime
ATGGTCTAGAAAGCTTGCCGCCTGATCGTCCGAGCCGGAACCGTCATCAT
TATCATCATCATCATCATCACATTCAATGTCATCCTCCTCACCATCGTAG
GGGATGTCGTACTCGTCGCTCTCGATTTCACTGTCGCCCTCGATGATTTC
CTCCAGAGCCTCTTCCTCATCGGAATCTCCATCGGCGGCCGCGGCCTTCT
TGGCCTTCTTTGATTCTGCGGATTTGGCTTCTGCTGGCCTCTTGGTGCCT
TTCACGGATTCCTTTGCGGGGGCAGCGGCGGCGGCATCGGCGGCATCCTC
GCCGTCCTTTGACGTACCGTTGTCGGCCGCGTCGCCGGCGGCATCGGCAG
CAGCGGCCTTATCCTCGGCGGCCGCCTTCGCCTTGAGATCGTCCTTGACA
GCAGACACATCATCTGCCGCCACCTTCTCCACGGCCACATCGCCGTTGTT
CTGTTGTTCCGTAGCAGCCGACATGTCGACTGATAACT
BO12708.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9894-PB | 459 | CG9894-RB | 1..456 | 474..19 | 2280 | 100 | Minus |
CG9894-PA | 459 | CG9894-RA | 1..456 | 474..19 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bacc-RD | 2524 | CG9894-RD | 440..895 | 474..19 | 2280 | 100 | Minus |
Bacc-RC | 2221 | CG9894-RC | 82..537 | 474..19 | 2280 | 100 | Minus |
Bacc-RA | 1010 | CG9894-RA | 183..638 | 474..19 | 2280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2753415..2753661 | 474..228 | 1235 | 100 | Minus |
2L | 23513712 | 2L | 2756008..2756174 | 228..62 | 820 | 99.4 | Minus |
2L | 23513712 | 2L | 2756244..2756291 | 66..19 | 240 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 12:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1161..1230 | 273..208 | 106 | 65.7 | Minus |
BO12708.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:25 Download gff for
BO12708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9894-PA | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:55 Download gff for
BO12708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9894-PA | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:28 Download gff for
BO12708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bacc-RA | 183..641 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:15 Download gff for
BO12708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bacc-RA | 183..641 | 15..474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:15 Download gff for
BO12708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2756245..2756294 | 15..65 | 96 | | Minus |
2L | 2753415..2753660 | 229..474 | 100 | -> | Minus |
2L | 2756008..2756170 | 66..228 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:28 Download gff for
BO12708.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2753415..2753660 | 229..474 | 100 | -> | Minus |
arm_2L | 2756008..2756170 | 66..228 | 100 | -> | Minus |
arm_2L | 2756245..2756294 | 15..65 | 96 | | Minus |
BO12708.5prime Sequence
488 bp (487 high quality bases) assembled on 2006-05-08
> BO12708.5prime
GAAGTTATCAGTCGACATGTCGGCTGCTACGGAACAACAGAACAACGGCG
ATGTGGCCGTGGAGAAGGTGGCGGCAGATGATGTGTCTGCTGTCAAGGAC
GATCTCAAGGCGAAGGCGGCCGCCGAGGATAAGGCCGCTGCTGCCGATGC
CGCCGGCGACGCGGCCGACAACGGTACGTCAAAGGACGGCGAGGATGCCG
CCGATGCCGCCGCCGCTGCCCCCGCAAAGGAATCCGTGAAAGGCACCAAG
AGGCCAGCAGAAGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGC
GGCCGCCGATGGAGATTCCGATGAGGAAGAGGCTCTGGAGGAAATCATCG
AGGGCGACAGTGAAATCGAGAGCGACGAGTACGACATCCCCTACGATGGT
GAGGAGGATGACATTGAATGTGATGATGATGATGATGATAATGATGACGG
TTCCGGCTCGGACGATCAGGCGGCAAGCTTTCTAGACC
BO12708.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9894-PB | 459 | CG9894-RB | 1..456 | 17..472 | 2280 | 100 | Plus |
CG9894-PA | 459 | CG9894-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bacc-RD | 2524 | CG9894-RD | 440..895 | 17..472 | 2280 | 100 | Plus |
Bacc-RC | 2221 | CG9894-RC | 82..537 | 17..472 | 2280 | 100 | Plus |
Bacc-RA | 1010 | CG9894-RA | 183..638 | 17..472 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2753415..2753661 | 17..263 | 1235 | 100 | Plus |
2L | 23513712 | 2L | 2756008..2756174 | 263..429 | 820 | 99.4 | Plus |
2L | 23513712 | 2L | 2756244..2756291 | 425..472 | 240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 13:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1161..1230 | 218..283 | 106 | 65.7 | Plus |
BO12708.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:26 Download gff for
BO12708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9894-PA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:21:57 Download gff for
BO12708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9894-PA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:16:24 Download gff for
BO12708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bacc-RA | 183..641 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:26 Download gff for
BO12708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bacc-RA | 183..641 | 17..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:26 Download gff for
BO12708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2753415..2753660 | 17..262 | 100 | -> | Plus |
2L | 2756008..2756170 | 263..425 | 100 | -> | Plus |
2L | 2756245..2756294 | 426..476 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:16:24 Download gff for
BO12708.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2753415..2753660 | 17..262 | 100 | -> | Plus |
arm_2L | 2756008..2756170 | 263..425 | 100 | -> | Plus |
arm_2L | 2756245..2756294 | 426..476 | 96 | | Plus |
BO12708.complete Sequence
490 bp assembled on 2006-10-11
GenBank Submission: FJ632527
> BO12708.complete
GAAGTTATCAGTCGACATGTCGGCTGCTACGGAACAACAGAACAACGGCG
ATGTGGCCGTGGAGAAGGTGGCGGCAGATGATGTGTCTGCTGTCAAGGAC
GATCTCAAGGCGAAGGCGGCCGCCGAGGATAAGGCCGCTGCTGCCGATGC
CGCCGGCGACGCGGCCGACAACGGTACGTCAAAGGACGGCGAGGATGCCG
CCGATGCCGCCGCCGCTGCCCCCGCAAAGGAATCCGTGAAAGGCACCAAG
AGGCCAGCAGAAGCCAAATCCGCAGAATCAAAGAAGGCCAAGAAGGCCGC
GGCCGCCGATGGAGATTCCGATGAGGAAGAGGCTCTGGAGGAAATCATCG
AGGGCGACAGTGAAATCGAGAGCGACGAGTACGACATCCCCTACGATGGT
GAGGAGGATGACATTGAATGTGATGATGATGATGATGATAATGATGACGG
TTCCGGCTCGGACGATCAGGCGGCAAGCTTTCTAGACCAT
BO12708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bacc-RD | 459 | CG9894-PD | 1..456 | 17..472 | 2280 | 100 | Plus |
Bacc-RC | 459 | CG9894-PC | 1..456 | 17..472 | 2280 | 100 | Plus |
Bacc-RA | 459 | CG9894-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bacc-RD | 2524 | CG9894-RD | 440..895 | 17..472 | 2280 | 100 | Plus |
Bacc-RC | 2221 | CG9894-RC | 82..537 | 17..472 | 2280 | 100 | Plus |
Bacc-RA | 1010 | CG9894-RA | 183..638 | 17..472 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2753415..2753661 | 17..263 | 1235 | 100 | Plus |
2L | 23513712 | 2L | 2756008..2756174 | 263..429 | 820 | 99.4 | Plus |
2L | 23513712 | 2L | 2756244..2756291 | 425..472 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1c | 5443 | Rt1c RT1C 5443bp | 1161..1230 | 218..283 | 106 | 65.7 | Plus |
BO12708.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:05 Download gff for
BO12708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9894-RA | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:52 Download gff for
BO12708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9894-RA | 182..640 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:47 Download gff for
BO12708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bacc-RA | 183..638 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:05 Download gff for
BO12708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9894-RA | 182..640 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:36 Download gff for
BO12708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Bacc-RA | 183..638 | 17..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:36 Download gff for
BO12708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2753415..2753660 | 17..262 | 100 | -> | Plus |
2L | 2756008..2756170 | 263..425 | 100 | -> | Plus |
2L | 2756245..2756291 | 426..474 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:47 Download gff for
BO12708.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2753415..2753660 | 17..262 | 100 | -> | Plus |
arm_2L | 2756008..2756170 | 263..425 | 100 | -> | Plus |
arm_2L | 2756245..2756291 | 426..474 | 95 | | Plus |
BO12708.pep Sequence
Translation from 16 to 490
> BO12708.pep
MSAATEQQNNGDVAVEKVAADDVSAVKDDLKAKAAAEDKAAAADAAGDAA
DNGTSKDGEDAADAAAAAPAKESVKGTKRPAEAKSAESKKAKKAAAADGD
SDEEEALEEIIEGDSEIESDEYDIPYDGEEDDIECDDDDDDNDDGSGSDD
QAASFLDH
BO12708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Bacc-PD | 152 | CG9894-PD | 1..152 | 1..152 | 759 | 100 | Plus |
Bacc-PC | 152 | CG9894-PC | 1..152 | 1..152 | 759 | 100 | Plus |
Bacc-PA | 152 | CG9894-PA | 1..152 | 1..152 | 759 | 100 | Plus |
Bacc-PB | 152 | CG9894-PB | 1..152 | 1..152 | 759 | 100 | Plus |
CG13096-PB | 681 | CG13096-PB | 552..675 | 20..150 | 156 | 35.9 | Plus |