Clone Sequence Records
BO12711.3prime Sequence
833 bp (779 high quality bases) assembled on 2006-05-09
> BO12711.3prime
ATGGTCTAGAAAGCTTGCCAGACGCATATCGTTGTATTTGGCAAAGGCCT
TGCACAGAGCAAAGGCCAGAATAATGAGGACCAGGTGCACAATGCCCACC
GCAATGGCCACGATGACCAGTTCACGTTGCCGAATCAGCCACTCGGTAAA
CACCTCATAGCAGCCCTTCTTGTAGAAACTGTTGCTGTCGCTGGGGTTGG
TTGTACAGTCCTCGTCGCGTGGCACCAACTTGGCCACATCCTTAAGGATA
CAGCAGGCATCGGGAATGGTGCGGTTACCCTTGCCGTTCACCCACGCTGG
AGAGGCATCAAAATCGTGATAGTCATTGATGCCACAGCACCCAAAGTTGC
CCATCAGTTGGTTCCACATCAGTGAGGTAGCATCCACATTCTCGCCCAGC
GAATAACTGGTAATGGTCGTCTGCAAGAAGTTTTTGCTCTCGGCACGAAC
TTTGTCCTTGAAGAAGGCACCCAATCCGCCGGCAACGATCTCGGCAATCA
GCAGCAGGATCAAAAAGGTTCCATACGTCGACAGCAGACAGCGGGACTCG
CGCATGGCTCCCAGATAGCCCAAGAAGCTCATGAAGAACATGACGGCTCC
GATGACGAGGAGCACATAGGCCAGCTGCTCTATGGCCTGTGGCTGTGTAA
ATTGCTCAATGCGCTCGCTCTCGACCAACTTGAGGAGAGCAATCAGCGAG
TGCTTGTCCACGGCCAGCCATAGTCCGACTCCGAATATAATTGTGCCTAG
CACGAAAAATATAAAATTGAATATGCAAAGCAAATACTTTGCACACCAGA
CTCCGCAGTCGAAGACCATGTCGACTGATAACT
BO12711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4999-PB | 804 | Tsp66E-RB | 1..801 | 819..19 | 4005 | 100 | Minus |
CG4999-PA | 804 | Tsp66E-RA | 1..801 | 819..19 | 4005 | 100 | Minus |
CG4999-PC | 804 | Tsp66E-RC | 1..801 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66E-RC | 2287 | CG4999-RC | 368..1168 | 819..19 | 4005 | 100 | Minus |
Tsp66E-RA | 2261 | CG4999-RA | 342..1142 | 819..19 | 4005 | 100 | Minus |
Tsp66E-RB | 2155 | CG4999-RB | 236..1036 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8930379..8930748 | 526..157 | 1820 | 99.5 | Minus |
3L | 28110227 | 3L | 8930798..8930946 | 167..19 | 745 | 100 | Minus |
3L | 28110227 | 3L | 8928014..8928144 | 656..526 | 655 | 100 | Minus |
3L | 28110227 | 3L | 8926696..8926794 | 753..655 | 495 | 100 | Minus |
3L | 28110227 | 3L | 8926127..8926194 | 819..752 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:37:24 has no hits.
BO12711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:28 Download gff for
BO12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4999-PC | 1..804 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:01 Download gff for
BO12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4999-PC | 1..804 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:50:46 Download gff for
BO12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RB | 228..1039 | 15..827 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:05 Download gff for
BO12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RB | 228..1039 | 15..827 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:05 Download gff for
BO12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8926119..8926192 | 754..827 | 94 | -> | Minus |
3L | 8926696..8926794 | 655..753 | 100 | -> | Minus |
3L | 8928016..8928144 | 526..654 | 100 | -> | Minus |
3L | 8930380..8930739 | 166..525 | 100 | -> | Minus |
3L | 8930800..8930949 | 15..165 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:50:46 Download gff for
BO12711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8919219..8919292 | 754..827 | 94 | -> | Minus |
arm_3L | 8919796..8919894 | 655..753 | 100 | -> | Minus |
arm_3L | 8921116..8921244 | 526..654 | 100 | -> | Minus |
arm_3L | 8923480..8923839 | 166..525 | 100 | -> | Minus |
arm_3L | 8923900..8924049 | 15..165 | 98 | | Minus |
BO12711.5prime Sequence
833 bp (832 high quality bases) assembled on 2006-05-08
> BO12711.5prime
GAAGTTATCAGTCGACATGGTCTTCGACTGCGGAGTCTGGTGTGCAAAGT
ATTTGCTTTGCATATTCAATTTTATATTTTTCGTGCTAGGCACAATTATA
TTCGGAGTCGGACTATGGCTGGCCGTGGACAAGCACTCGCTGATTGCTCT
CCTCAAGTTGGTCGAGAGCGAGCGCATTGAGCAATTTACACAGCCACAGG
CCATAGAGCAGCTGGCCTATGTGCTCCTCGTCATCGGAGCCGTCATGTTC
TTCATGAGCTTCTTGGGCTATCTGGGAGCCATGCGCGAGTCCCGCTGTCT
GCTGTCGACGTATGGAACCTTTTTGATCCTGCTGCTGATTGCCGAGATCG
TTGCCGGCGGATTGGGTGCCTTCTTCAAGGACAAAGTTCGTGCCGAGAGC
AAAAACTTCTTGCAGACGACCATTACCAGTTATTCGCTGGGCGAGAATGT
GGATGCTACCTCACTGATGTGGAACCAACTGATGGGCAACTTTGGGTGCT
GTGGCATCAATGACTATCACGATTTTGATGCCTCTCCAGCGTGGGTGAAC
GGCAAGGGTAACCGCACCATTCCCGATGCCTGCTGTATCCTTAAGGATGT
GGCCAAGTTGGTGCCACGCGACGAGGACTGTACAACCAACCCCAGCGACA
GCAACAGTTTCTACAAGAAGGGCTGCTATGAGGTGTTTACCGAGTGGCTG
ATTCGGCAACGTGAACTGGTCATCGTGGCCATTGCGGTGGGCATTGTGCA
CCTGGTCCTCATTATTCTGGCCTTTGCTCTGTGCAAGGCCTTTGCCAAAT
ACAACGATATGCGTCTGGCAAGCTTTCTAGACC
BO12711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4999-PB | 804 | Tsp66E-RB | 1..801 | 17..817 | 4005 | 100 | Plus |
CG4999-PA | 804 | Tsp66E-RA | 1..801 | 17..817 | 4005 | 100 | Plus |
CG4999-PC | 804 | Tsp66E-RC | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66E-RC | 2287 | CG4999-RC | 368..1168 | 17..817 | 4005 | 100 | Plus |
Tsp66E-RA | 2261 | CG4999-RA | 342..1142 | 17..817 | 4005 | 100 | Plus |
Tsp66E-RB | 2155 | CG4999-RB | 236..1036 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8930379..8930748 | 310..679 | 1820 | 99.5 | Plus |
3L | 28110227 | 3L | 8930798..8930946 | 669..817 | 745 | 100 | Plus |
3L | 28110227 | 3L | 8928014..8928144 | 180..310 | 655 | 100 | Plus |
3L | 28110227 | 3L | 8926696..8926794 | 83..181 | 495 | 100 | Plus |
3L | 28110227 | 3L | 8926127..8926194 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:28:26 has no hits.
BO12711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:29 Download gff for
BO12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4999-PC | 1..804 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:03 Download gff for
BO12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4999-PC | 1..804 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:09 Download gff for
BO12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RB | 228..1039 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:19 Download gff for
BO12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RB | 228..1039 | 9..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:19 Download gff for
BO12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8926119..8926192 | 9..82 | 94 | -> | Plus |
3L | 8926696..8926794 | 83..181 | 100 | -> | Plus |
3L | 8928016..8928144 | 182..310 | 100 | -> | Plus |
3L | 8930380..8930739 | 311..670 | 100 | -> | Plus |
3L | 8930800..8930949 | 671..821 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:09 Download gff for
BO12711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8919219..8919292 | 9..82 | 94 | -> | Plus |
arm_3L | 8919796..8919894 | 83..181 | 100 | -> | Plus |
arm_3L | 8921116..8921244 | 182..310 | 100 | -> | Plus |
arm_3L | 8923480..8923839 | 311..670 | 100 | -> | Plus |
arm_3L | 8923900..8924049 | 671..821 | 98 | | Plus |
BO12711.complete Sequence
835 bp assembled on 2006-10-11
GenBank Submission: FJ632528
> BO12711.complete
GAAGTTATCAGTCGACATGGTCTTCGACTGCGGAGTCTGGTGTGCAAAGT
ATTTGCTTTGCATATTCAATTTTATATTTTTCGTGCTAGGCACAATTATA
TTCGGAGTCGGACTATGGCTGGCCGTGGACAAGCACTCGCTGATTGCTCT
CCTCAAGTTGGTCGAGAGCGAGCGCATTGAGCAATTTACACAGCCACAGG
CCATAGAGCAGCTGGCCTATGTGCTCCTCGTCATCGGAGCCGTCATGTTC
TTCATGAGCTTCTTGGGCTATCTGGGAGCCATGCGCGAGTCCCGCTGTCT
GCTGTCGACGTATGGAACCTTTTTGATCCTGCTGCTGATTGCCGAGATCG
TTGCCGGCGGATTGGGTGCCTTCTTCAAGGACAAAGTTCGTGCCGAGAGC
AAAAACTTCTTGCAGACGACCATTACCAGTTATTCGCTGGGCGAGAATGT
GGATGCTACCTCACTGATGTGGAACCAACTGATGGGCAACTTTGGGTGCT
GTGGCATCAATGACTATCACGATTTTGATGCCTCTCCAGCGTGGGTGAAC
GGCAAGGGTAACCGCACCATTCCCGATGCCTGCTGTATCCTTAAGGATGT
GGCCAAGTTGGTGCCACGCGACGAGGACTGTACAACCAACCCCAGCGACA
GCAACAGTTTCTACAAGAAGGGCTGCTATGAGGTGTTTACCGAGTGGCTG
ATTCGGCAACGTGAACTGGTCATCGTGGCCATTGCGGTGGGCATTGTGCA
CCTGGTCCTCATTATTCTGGCCTTTGCTCTGTGCAAGGCCTTTGCCAAAT
ACAACGATATGCGTCTGGCAAGCTTTCTAGACCAT
BO12711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66E-RC | 804 | CG4999-PC | 1..801 | 17..817 | 4005 | 100 | Plus |
Tsp66E-RA | 804 | CG4999-PA | 1..801 | 17..817 | 4005 | 100 | Plus |
Tsp66E-RB | 804 | CG4999-PB | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66E-RC | 2287 | CG4999-RC | 368..1168 | 17..817 | 4005 | 100 | Plus |
Tsp66E-RA | 2261 | CG4999-RA | 342..1142 | 17..817 | 4005 | 100 | Plus |
Tsp66E-RB | 2155 | CG4999-RB | 236..1036 | 17..817 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8930379..8930748 | 310..679 | 1820 | 99.5 | Plus |
3L | 28110227 | 3L | 8930798..8930946 | 669..817 | 745 | 100 | Plus |
3L | 28110227 | 3L | 8928014..8928144 | 180..310 | 655 | 100 | Plus |
3L | 28110227 | 3L | 8926696..8926794 | 83..181 | 495 | 100 | Plus |
3L | 28110227 | 3L | 8926127..8926194 | 17..84 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:10:24 has no hits.
BO12711.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:06 Download gff for
BO12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RC | 1..804 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:54 Download gff for
BO12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RC | 358..1169 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:01 Download gff for
BO12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RB | 236..1036 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:07 Download gff for
BO12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RC | 358..1169 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:29 Download gff for
BO12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp66E-RB | 236..1036 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:29 Download gff for
BO12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8926127..8926192 | 17..82 | 100 | -> | Plus |
3L | 8926696..8926794 | 83..181 | 100 | -> | Plus |
3L | 8928016..8928144 | 182..310 | 100 | -> | Plus |
3L | 8930380..8930739 | 311..670 | 100 | -> | Plus |
3L | 8930800..8930946 | 671..819 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:01 Download gff for
BO12711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8919227..8919292 | 17..82 | 100 | -> | Plus |
arm_3L | 8919796..8919894 | 83..181 | 100 | -> | Plus |
arm_3L | 8921116..8921244 | 182..310 | 100 | -> | Plus |
arm_3L | 8923480..8923839 | 311..670 | 100 | -> | Plus |
arm_3L | 8923900..8924046 | 671..819 | 98 | | Plus |
BO12711.pep Sequence
Translation from 16 to 835
> BO12711.pep
MVFDCGVWCAKYLLCIFNFIFFVLGTIIFGVGLWLAVDKHSLIALLKLVE
SERIEQFTQPQAIEQLAYVLLVIGAVMFFMSFLGYLGAMRESRCLLSTYG
TFLILLLIAEIVAGGLGAFFKDKVRAESKNFLQTTITSYSLGENVDATSL
MWNQLMGNFGCCGINDYHDFDASPAWVNGKGNRTIPDACCILKDVAKLVP
RDEDCTTNPSDSNSFYKKGCYEVFTEWLIRQRELVIVAIAVGIVHLVLII
LAFALCKAFAKYNDMRLASFLDH
BO12711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp66E-PC | 267 | CG4999-PC | 1..267 | 1..267 | 1398 | 100 | Plus |
Tsp66E-PA | 267 | CG4999-PA | 1..267 | 1..267 | 1398 | 100 | Plus |
Tsp66E-PB | 267 | CG4999-PB | 1..267 | 1..267 | 1398 | 100 | Plus |
Tsp74F-PB | 236 | CG5492-PB | 8..228 | 4..254 | 249 | 27.9 | Plus |
Tsp74F-PA | 236 | CG5492-PA | 8..228 | 4..254 | 249 | 27.9 | Plus |