Clone BO12711 Report

Search the DGRC for BO12711

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptTsp66E-RA
Protein status:BO12711.pep: validated full length
Sequenced Size:835

Clone Sequence Records

BO12711.3prime Sequence

833 bp (779 high quality bases) assembled on 2006-05-09

> BO12711.3prime
ATGGTCTAGAAAGCTTGCCAGACGCATATCGTTGTATTTGGCAAAGGCCT
TGCACAGAGCAAAGGCCAGAATAATGAGGACCAGGTGCACAATGCCCACC
GCAATGGCCACGATGACCAGTTCACGTTGCCGAATCAGCCACTCGGTAAA
CACCTCATAGCAGCCCTTCTTGTAGAAACTGTTGCTGTCGCTGGGGTTGG
TTGTACAGTCCTCGTCGCGTGGCACCAACTTGGCCACATCCTTAAGGATA
CAGCAGGCATCGGGAATGGTGCGGTTACCCTTGCCGTTCACCCACGCTGG
AGAGGCATCAAAATCGTGATAGTCATTGATGCCACAGCACCCAAAGTTGC
CCATCAGTTGGTTCCACATCAGTGAGGTAGCATCCACATTCTCGCCCAGC
GAATAACTGGTAATGGTCGTCTGCAAGAAGTTTTTGCTCTCGGCACGAAC
TTTGTCCTTGAAGAAGGCACCCAATCCGCCGGCAACGATCTCGGCAATCA
GCAGCAGGATCAAAAAGGTTCCATACGTCGACAGCAGACAGCGGGACTCG
CGCATGGCTCCCAGATAGCCCAAGAAGCTCATGAAGAACATGACGGCTCC
GATGACGAGGAGCACATAGGCCAGCTGCTCTATGGCCTGTGGCTGTGTAA
ATTGCTCAATGCGCTCGCTCTCGACCAACTTGAGGAGAGCAATCAGCGAG
TGCTTGTCCACGGCCAGCCATAGTCCGACTCCGAATATAATTGTGCCTAG
CACGAAAAATATAAAATTGAATATGCAAAGCAAATACTTTGCACACCAGA
CTCCGCAGTCGAAGACCATGTCGACTGATAACT

BO12711.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4999-PB 804 Tsp66E-RB 1..801 819..19 4005 100 Minus
CG4999-PA 804 Tsp66E-RA 1..801 819..19 4005 100 Minus
CG4999-PC 804 Tsp66E-RC 1..801 819..19 4005 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp66E-RC 2287 CG4999-RC 368..1168 819..19 4005 100 Minus
Tsp66E-RA 2261 CG4999-RA 342..1142 819..19 4005 100 Minus
Tsp66E-RB 2155 CG4999-RB 236..1036 819..19 4005 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8930379..8930748 526..157 1820 99.5 Minus
3L 28110227 3L 8930798..8930946 167..19 745 100 Minus
3L 28110227 3L 8928014..8928144 656..526 655 100 Minus
3L 28110227 3L 8926696..8926794 753..655 495 100 Minus
3L 28110227 3L 8926127..8926194 819..752 340 100 Minus
Blast to na_te.dros performed on 2015-01-31 11:37:24 has no hits.

BO12711.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:28 Download gff for BO12711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4999-PC 1..804 15..819 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:01 Download gff for BO12711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4999-PC 1..804 15..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:50:46 Download gff for BO12711.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RB 228..1039 15..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:57:05 Download gff for BO12711.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RB 228..1039 15..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:57:05 Download gff for BO12711.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8926119..8926192 754..827 94 -> Minus
3L 8926696..8926794 655..753 100 -> Minus
3L 8928016..8928144 526..654 100 -> Minus
3L 8930380..8930739 166..525 100 -> Minus
3L 8930800..8930949 15..165 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:50:46 Download gff for BO12711.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8919219..8919292 754..827 94 -> Minus
arm_3L 8919796..8919894 655..753 100 -> Minus
arm_3L 8921116..8921244 526..654 100 -> Minus
arm_3L 8923480..8923839 166..525 100 -> Minus
arm_3L 8923900..8924049 15..165 98   Minus

BO12711.5prime Sequence

833 bp (832 high quality bases) assembled on 2006-05-08

> BO12711.5prime
GAAGTTATCAGTCGACATGGTCTTCGACTGCGGAGTCTGGTGTGCAAAGT
ATTTGCTTTGCATATTCAATTTTATATTTTTCGTGCTAGGCACAATTATA
TTCGGAGTCGGACTATGGCTGGCCGTGGACAAGCACTCGCTGATTGCTCT
CCTCAAGTTGGTCGAGAGCGAGCGCATTGAGCAATTTACACAGCCACAGG
CCATAGAGCAGCTGGCCTATGTGCTCCTCGTCATCGGAGCCGTCATGTTC
TTCATGAGCTTCTTGGGCTATCTGGGAGCCATGCGCGAGTCCCGCTGTCT
GCTGTCGACGTATGGAACCTTTTTGATCCTGCTGCTGATTGCCGAGATCG
TTGCCGGCGGATTGGGTGCCTTCTTCAAGGACAAAGTTCGTGCCGAGAGC
AAAAACTTCTTGCAGACGACCATTACCAGTTATTCGCTGGGCGAGAATGT
GGATGCTACCTCACTGATGTGGAACCAACTGATGGGCAACTTTGGGTGCT
GTGGCATCAATGACTATCACGATTTTGATGCCTCTCCAGCGTGGGTGAAC
GGCAAGGGTAACCGCACCATTCCCGATGCCTGCTGTATCCTTAAGGATGT
GGCCAAGTTGGTGCCACGCGACGAGGACTGTACAACCAACCCCAGCGACA
GCAACAGTTTCTACAAGAAGGGCTGCTATGAGGTGTTTACCGAGTGGCTG
ATTCGGCAACGTGAACTGGTCATCGTGGCCATTGCGGTGGGCATTGTGCA
CCTGGTCCTCATTATTCTGGCCTTTGCTCTGTGCAAGGCCTTTGCCAAAT
ACAACGATATGCGTCTGGCAAGCTTTCTAGACC

BO12711.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4999-PB 804 Tsp66E-RB 1..801 17..817 4005 100 Plus
CG4999-PA 804 Tsp66E-RA 1..801 17..817 4005 100 Plus
CG4999-PC 804 Tsp66E-RC 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp66E-RC 2287 CG4999-RC 368..1168 17..817 4005 100 Plus
Tsp66E-RA 2261 CG4999-RA 342..1142 17..817 4005 100 Plus
Tsp66E-RB 2155 CG4999-RB 236..1036 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8930379..8930748 310..679 1820 99.5 Plus
3L 28110227 3L 8930798..8930946 669..817 745 100 Plus
3L 28110227 3L 8928014..8928144 180..310 655 100 Plus
3L 28110227 3L 8926696..8926794 83..181 495 100 Plus
3L 28110227 3L 8926127..8926194 17..84 340 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:28:26 has no hits.

BO12711.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:29 Download gff for BO12711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4999-PC 1..804 17..821 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:03 Download gff for BO12711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4999-PC 1..804 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:09 Download gff for BO12711.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RB 228..1039 9..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:19 Download gff for BO12711.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RB 228..1039 9..821 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:19 Download gff for BO12711.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8926119..8926192 9..82 94 -> Plus
3L 8926696..8926794 83..181 100 -> Plus
3L 8928016..8928144 182..310 100 -> Plus
3L 8930380..8930739 311..670 100 -> Plus
3L 8930800..8930949 671..821 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:09 Download gff for BO12711.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8919219..8919292 9..82 94 -> Plus
arm_3L 8919796..8919894 83..181 100 -> Plus
arm_3L 8921116..8921244 182..310 100 -> Plus
arm_3L 8923480..8923839 311..670 100 -> Plus
arm_3L 8923900..8924049 671..821 98   Plus

BO12711.complete Sequence

835 bp assembled on 2006-10-11

GenBank Submission: FJ632528

> BO12711.complete
GAAGTTATCAGTCGACATGGTCTTCGACTGCGGAGTCTGGTGTGCAAAGT
ATTTGCTTTGCATATTCAATTTTATATTTTTCGTGCTAGGCACAATTATA
TTCGGAGTCGGACTATGGCTGGCCGTGGACAAGCACTCGCTGATTGCTCT
CCTCAAGTTGGTCGAGAGCGAGCGCATTGAGCAATTTACACAGCCACAGG
CCATAGAGCAGCTGGCCTATGTGCTCCTCGTCATCGGAGCCGTCATGTTC
TTCATGAGCTTCTTGGGCTATCTGGGAGCCATGCGCGAGTCCCGCTGTCT
GCTGTCGACGTATGGAACCTTTTTGATCCTGCTGCTGATTGCCGAGATCG
TTGCCGGCGGATTGGGTGCCTTCTTCAAGGACAAAGTTCGTGCCGAGAGC
AAAAACTTCTTGCAGACGACCATTACCAGTTATTCGCTGGGCGAGAATGT
GGATGCTACCTCACTGATGTGGAACCAACTGATGGGCAACTTTGGGTGCT
GTGGCATCAATGACTATCACGATTTTGATGCCTCTCCAGCGTGGGTGAAC
GGCAAGGGTAACCGCACCATTCCCGATGCCTGCTGTATCCTTAAGGATGT
GGCCAAGTTGGTGCCACGCGACGAGGACTGTACAACCAACCCCAGCGACA
GCAACAGTTTCTACAAGAAGGGCTGCTATGAGGTGTTTACCGAGTGGCTG
ATTCGGCAACGTGAACTGGTCATCGTGGCCATTGCGGTGGGCATTGTGCA
CCTGGTCCTCATTATTCTGGCCTTTGCTCTGTGCAAGGCCTTTGCCAAAT
ACAACGATATGCGTCTGGCAAGCTTTCTAGACCAT

BO12711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp66E-RC 804 CG4999-PC 1..801 17..817 4005 100 Plus
Tsp66E-RA 804 CG4999-PA 1..801 17..817 4005 100 Plus
Tsp66E-RB 804 CG4999-PB 1..801 17..817 4005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp66E-RC 2287 CG4999-RC 368..1168 17..817 4005 100 Plus
Tsp66E-RA 2261 CG4999-RA 342..1142 17..817 4005 100 Plus
Tsp66E-RB 2155 CG4999-RB 236..1036 17..817 4005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8930379..8930748 310..679 1820 99.5 Plus
3L 28110227 3L 8930798..8930946 669..817 745 100 Plus
3L 28110227 3L 8928014..8928144 180..310 655 100 Plus
3L 28110227 3L 8926696..8926794 83..181 495 100 Plus
3L 28110227 3L 8926127..8926194 17..84 340 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:10:24 has no hits.

BO12711.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:06 Download gff for BO12711.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RC 1..804 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:54 Download gff for BO12711.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RC 358..1169 9..821 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:01 Download gff for BO12711.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RB 236..1036 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:07 Download gff for BO12711.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RC 358..1169 9..821 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:29 Download gff for BO12711.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp66E-RB 236..1036 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:29 Download gff for BO12711.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8926127..8926192 17..82 100 -> Plus
3L 8926696..8926794 83..181 100 -> Plus
3L 8928016..8928144 182..310 100 -> Plus
3L 8930380..8930739 311..670 100 -> Plus
3L 8930800..8930946 671..819 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:01 Download gff for BO12711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8919227..8919292 17..82 100 -> Plus
arm_3L 8919796..8919894 83..181 100 -> Plus
arm_3L 8921116..8921244 182..310 100 -> Plus
arm_3L 8923480..8923839 311..670 100 -> Plus
arm_3L 8923900..8924046 671..819 98   Plus

BO12711.pep Sequence

Translation from 16 to 835

> BO12711.pep
MVFDCGVWCAKYLLCIFNFIFFVLGTIIFGVGLWLAVDKHSLIALLKLVE
SERIEQFTQPQAIEQLAYVLLVIGAVMFFMSFLGYLGAMRESRCLLSTYG
TFLILLLIAEIVAGGLGAFFKDKVRAESKNFLQTTITSYSLGENVDATSL
MWNQLMGNFGCCGINDYHDFDASPAWVNGKGNRTIPDACCILKDVAKLVP
RDEDCTTNPSDSNSFYKKGCYEVFTEWLIRQRELVIVAIAVGIVHLVLII
LAFALCKAFAKYNDMRLASFLDH

BO12711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp66E-PC 267 CG4999-PC 1..267 1..267 1398 100 Plus
Tsp66E-PA 267 CG4999-PA 1..267 1..267 1398 100 Plus
Tsp66E-PB 267 CG4999-PB 1..267 1..267 1398 100 Plus
Tsp74F-PB 236 CG5492-PB 8..228 4..254 249 27.9 Plus
Tsp74F-PA 236 CG5492-PA 8..228 4..254 249 27.9 Plus