Clone BO12714 Report

Search the DGRC for BO12714

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptTsp29Fa-RA
Protein status:BO12714.pep: validated full length
Sequenced Size:778

Clone Sequence Records

BO12714.3prime Sequence

776 bp (775 high quality bases) assembled on 2006-05-09

> BO12714.3prime
ATGGTCTAGAAAGCTTGCCATAAAACCAGTAATTCCATTACGGATTTTAA
TCTCACGTGCAATGTAGCAGGCAAAGATTACGCCAAAGAACTGGAGGATG
GCAATGACCACCCCTGCAGCTCCTAGGCTGACCGCATGGGCGGAAATGTA
TCCGGAGAATCCGTCGAGGCATCCAACTTTGTGCCGGTCTGCCACGCTGG
ACTGAGCATTATTGCAGGTGAATGTGCCCACTGCGCCGACATGAACGTTG
CAGCAGGAGATGGGCAGGTCGCCGTTAGGGAAGGCGGTGATCCAGTCGTT
GTATGAGGTCACACCACAGCACTCGAACTCATCCTGGATGTCATCCCAGA
GTTTCGTGGTCGCATTTGGATTGATACTGTTATACTCGTTCAGCGAGTAA
GTCAGAGAAGTTTTGATCAAATCGGAGGCGTCATTGCGCAGCACATAGCC
ACTGATGCCAGCAGCCAGCTCCAGGATGAAGATGATGGCCAGCATGACCG
AGAAGCTGAGCACCAGGCAATAGTTCTCCTTCAGGGCACCCCAGCAACCA
AAGAAAGAGATTATGATGATGAACGATCCAATCACGATCAGGAACGTGGG
GATCGAGAAGAACTTTCCGGCCAGGAAGAGCTTATAGCCCGTATAGACGG
CGCCAACTCCGGCTCCCACGGCAATCAAGATAATGCCAGTGATCAAAAAA
ATTAAGTTAAATCCGAAAAGCGTATACTTCACAGCATTGGCGCTGCCCGT
TAGAAGCGACATGTCGACTGATAACT

BO12714.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9494-PA 747 Tsp29Fa-RA 1..744 762..19 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fa-RC 1052 CG9494-RC 167..910 762..19 3720 100 Minus
Tsp29Fa-RB 1247 CG9494-RB 362..1105 762..19 3720 100 Minus
Tsp29Fa-RA 963 CG9494-RA 78..821 762..19 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8935151..8935754 694..91 3020 100 Minus
2L 23513712 2L 8935878..8935954 95..19 385 100 Minus
2L 23513712 2L 8934990..8935058 762..694 345 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:53:51 has no hits.

BO12714.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:32 Download gff for BO12714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9494-PA 1..747 18..762 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:06 Download gff for BO12714.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9494-PA 1..747 18..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:17 Download gff for BO12714.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 70..821 19..770 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:52 Download gff for BO12714.3prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 70..821 19..770 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:52 Download gff for BO12714.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8934982..8935058 694..770 94 -> Minus
2L 8935152..8935754 91..693 100 -> Minus
2L 8935883..8935954 19..90 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:17 Download gff for BO12714.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8934982..8935058 694..770 94 -> Minus
arm_2L 8935152..8935754 91..693 100 -> Minus
arm_2L 8935883..8935954 19..90 100   Minus

BO12714.5prime Sequence

776 bp (775 high quality bases) assembled on 2006-05-08

> BO12714.5prime
GAAGTTATCAGTCGACATGTCGCTTCTAACGGGCAGCGCCAATGCTGTGA
AGTATACGCTTTTCGGATTTAACTTAATTTTTTTGATCACTGGCATTATC
TTGATTGCCGTGGGAGCCGGAGTTGGCGCCGTCTATACGGGCTATAAGCT
CTTCCTGGCCGGAAAGTTCTTCTCGATCCCCACGTTCCTGATCGTGATTG
GATCGTTCATCATCATAATCTCTTTCTTTGGTTGCTGGGGTGCCCTGAAG
GAGAACTATTGCCTGGTGCTCAGCTTCTCGGTCATGCTGGCCATCATCTT
CATCCTGGAGCTGGCTGCTGGCATCAGTGGCTATGTGCTGCGCAATGACG
CCTCCGATTTGATCAAAACTTCTCTGACTTACTCGCTGAACGAGTATAAC
AGTATCAATCCAAATGCGACCACGAAACTCTGGGATGACATCCAGGATGA
GTTCGAGTGCTGTGGTGTGACCTCATACAACGACTGGATCACCGCCTTCC
CTAACGGCGACCTGCCCATCTCCTGCTGCAACGTTCATGTCGGCGCAGTG
GGCACATTCACCTGCAATAATGCTCAGTCCAGCGTGGCAGACCGGCACAA
AGTTGGATGCCTCGACGGATTCTCCGGATACATTTCCGCCCATGCGGTCA
GCCTAGGAGCTGCAGGGGTGGTCATTGCCATCCTCCAGTTCTTTGGCGTA
ATCTTTGCCTGCTACATTGCACGTGAGATTAAAATCCGTAATGGAATTAC
TGGTTTTATGGCAAGCTTTCTAGACC

BO12714.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9494-PA 747 Tsp29Fa-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fa-RC 1052 CG9494-RC 167..910 17..760 3720 100 Plus
Tsp29Fa-RB 1247 CG9494-RB 362..1105 17..760 3720 100 Plus
Tsp29Fa-RA 963 CG9494-RA 78..821 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8935151..8935754 85..688 3020 100 Plus
2L 23513712 2L 8935878..8935954 684..760 385 100 Plus
2L 23513712 2L 8934990..8935058 17..85 345 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:17:04 has no hits.

BO12714.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:33 Download gff for BO12714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9494-PA 1..747 17..761 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:08 Download gff for BO12714.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9494-PA 1..747 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:26 Download gff for BO12714.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 70..821 9..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:37 Download gff for BO12714.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 70..821 9..760 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:37 Download gff for BO12714.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8934982..8935058 9..85 94 -> Plus
2L 8935152..8935754 86..688 100 -> Plus
2L 8935883..8935954 689..760 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:26 Download gff for BO12714.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8934982..8935058 9..85 94 -> Plus
arm_2L 8935152..8935754 86..688 100 -> Plus
arm_2L 8935883..8935954 689..760 100   Plus

BO12714.complete Sequence

778 bp assembled on 2006-10-11

GenBank Submission: FJ638705

> BO12714.complete
GAAGTTATCAGTCGACATGTCGCTTCTAACGGGCAGCGCCAATGCTGTGA
AGTATACGCTTTTCGGATTTAACTTAATTTTTTTGATCACTGGCATTATC
TTGATTGCCGTGGGAGCCGGAGTTGGCGCCGTCTATACGGGCTATAAGCT
CTTCCTGGCCGGAAAGTTCTTCTCGATCCCCACGTTCCTGATCGTGATTG
GATCGTTCATCATCATAATCTCTTTCTTTGGTTGCTGGGGTGCCCTGAAG
GAGAACTATTGCCTGGTGCTCAGCTTCTCGGTCATGCTGGCCATCATCTT
CATCCTGGAGCTGGCTGCTGGCATCAGTGGCTATGTGCTGCGCAATGACG
CCTCCGATTTGATCAAAACTTCTCTGACTTACTCGCTGAACGAGTATAAC
AGTATCAATCCAAATGCGACCACGAAACTCTGGGATGACATCCAGGATGA
GTTCGAGTGCTGTGGTGTGACCTCATACAACGACTGGATCACCGCCTTCC
CTAACGGCGACCTGCCCATCTCCTGCTGCAACGTTCATGTCGGCGCAGTG
GGCACATTCACCTGCAATAATGCTCAGTCCAGCGTGGCAGACCGGCACAA
AGTTGGATGCCTCGACGGATTCTCCGGATACATTTCCGCCCATGCGGTCA
GCCTAGGAGCTGCAGGGGTGGTCATTGCCATCCTCCAGTTCTTTGGCGTA
ATCTTTGCCTGCTACATTGCACGTGAGATTAAAATCCGTAATGGAATTAC
TGGTTTTATGGCAAGCTTTCTAGACCAT

BO12714.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fa-RC 747 CG9494-PC 1..744 17..760 3720 100 Plus
Tsp29Fa-RB 747 CG9494-PB 1..744 17..760 3720 100 Plus
Tsp29Fa-RA 747 CG9494-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fa-RC 1052 CG9494-RC 167..910 17..760 3720 100 Plus
Tsp29Fa-RB 1247 CG9494-RB 362..1105 17..760 3720 100 Plus
Tsp29Fa-RA 963 CG9494-RA 78..821 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8935151..8935754 85..688 3020 100 Plus
2L 23513712 2L 8935878..8935954 684..760 385 100 Plus
2L 23513712 2L 8934990..8935058 17..85 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:40:51 has no hits.

BO12714.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:36 Download gff for BO12714.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 1..747 17..761 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:14 Download gff for BO12714.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RB 146..897 9..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:26 Download gff for BO12714.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 78..821 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:37 Download gff for BO12714.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 70..821 9..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:10 Download gff for BO12714.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp29Fa-RA 78..821 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:10 Download gff for BO12714.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8934990..8935058 17..85 100 -> Plus
2L 8935152..8935754 86..688 100 -> Plus
2L 8935883..8935954 689..762 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:26 Download gff for BO12714.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8934990..8935058 17..85 100 -> Plus
arm_2L 8935152..8935754 86..688 100 -> Plus
arm_2L 8935883..8935954 689..762 97   Plus

BO12714.pep Sequence

Translation from 16 to 778

> BO12714.pep
MSLLTGSANAVKYTLFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLAGK
FFSIPTFLIVIGSFIIIISFFGCWGALKENYCLVLSFSVMLAIIFILELA
AGISGYVLRNDASDLIKTSLTYSLNEYNSINPNATTKLWDDIQDEFECCG
VTSYNDWITAFPNGDLPISCCNVHVGAVGTFTCNNAQSSVADRHKVGCLD
GFSGYISAHAVSLGAAGVVIAILQFFGVIFACYIAREIKIRNGITGFMAS
FLDH

BO12714.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp29Fa-PC 248 CG9494-PC 1..248 1..248 1286 100 Plus
Tsp29Fa-PB 248 CG9494-PB 1..248 1..248 1286 100 Plus
Tsp29Fa-PA 248 CG9494-PA 1..248 1..248 1286 100 Plus
Tsp47F-PB 239 CG9033-PB 9..234 11..239 400 37.4 Plus
Tsp39D-PB 235 CG8666-PB 1..229 3..239 352 29.5 Plus