Clone Sequence Records
BO12714.3prime Sequence
776 bp (775 high quality bases) assembled on 2006-05-09
> BO12714.3prime
ATGGTCTAGAAAGCTTGCCATAAAACCAGTAATTCCATTACGGATTTTAA
TCTCACGTGCAATGTAGCAGGCAAAGATTACGCCAAAGAACTGGAGGATG
GCAATGACCACCCCTGCAGCTCCTAGGCTGACCGCATGGGCGGAAATGTA
TCCGGAGAATCCGTCGAGGCATCCAACTTTGTGCCGGTCTGCCACGCTGG
ACTGAGCATTATTGCAGGTGAATGTGCCCACTGCGCCGACATGAACGTTG
CAGCAGGAGATGGGCAGGTCGCCGTTAGGGAAGGCGGTGATCCAGTCGTT
GTATGAGGTCACACCACAGCACTCGAACTCATCCTGGATGTCATCCCAGA
GTTTCGTGGTCGCATTTGGATTGATACTGTTATACTCGTTCAGCGAGTAA
GTCAGAGAAGTTTTGATCAAATCGGAGGCGTCATTGCGCAGCACATAGCC
ACTGATGCCAGCAGCCAGCTCCAGGATGAAGATGATGGCCAGCATGACCG
AGAAGCTGAGCACCAGGCAATAGTTCTCCTTCAGGGCACCCCAGCAACCA
AAGAAAGAGATTATGATGATGAACGATCCAATCACGATCAGGAACGTGGG
GATCGAGAAGAACTTTCCGGCCAGGAAGAGCTTATAGCCCGTATAGACGG
CGCCAACTCCGGCTCCCACGGCAATCAAGATAATGCCAGTGATCAAAAAA
ATTAAGTTAAATCCGAAAAGCGTATACTTCACAGCATTGGCGCTGCCCGT
TAGAAGCGACATGTCGACTGATAACT
BO12714.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9494-PA | 747 | Tsp29Fa-RA | 1..744 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fa-RC | 1052 | CG9494-RC | 167..910 | 762..19 | 3720 | 100 | Minus |
Tsp29Fa-RB | 1247 | CG9494-RB | 362..1105 | 762..19 | 3720 | 100 | Minus |
Tsp29Fa-RA | 963 | CG9494-RA | 78..821 | 762..19 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8935151..8935754 | 694..91 | 3020 | 100 | Minus |
2L | 23513712 | 2L | 8935878..8935954 | 95..19 | 385 | 100 | Minus |
2L | 23513712 | 2L | 8934990..8935058 | 762..694 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:53:51 has no hits.
BO12714.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:32 Download gff for
BO12714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9494-PA | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:06 Download gff for
BO12714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9494-PA | 1..747 | 18..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:17:17 Download gff for
BO12714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 70..821 | 19..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:52 Download gff for
BO12714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 70..821 | 19..770 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:52 Download gff for
BO12714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8934982..8935058 | 694..770 | 94 | -> | Minus |
2L | 8935152..8935754 | 91..693 | 100 | -> | Minus |
2L | 8935883..8935954 | 19..90 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:17:17 Download gff for
BO12714.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8934982..8935058 | 694..770 | 94 | -> | Minus |
arm_2L | 8935152..8935754 | 91..693 | 100 | -> | Minus |
arm_2L | 8935883..8935954 | 19..90 | 100 | | Minus |
BO12714.5prime Sequence
776 bp (775 high quality bases) assembled on 2006-05-08
> BO12714.5prime
GAAGTTATCAGTCGACATGTCGCTTCTAACGGGCAGCGCCAATGCTGTGA
AGTATACGCTTTTCGGATTTAACTTAATTTTTTTGATCACTGGCATTATC
TTGATTGCCGTGGGAGCCGGAGTTGGCGCCGTCTATACGGGCTATAAGCT
CTTCCTGGCCGGAAAGTTCTTCTCGATCCCCACGTTCCTGATCGTGATTG
GATCGTTCATCATCATAATCTCTTTCTTTGGTTGCTGGGGTGCCCTGAAG
GAGAACTATTGCCTGGTGCTCAGCTTCTCGGTCATGCTGGCCATCATCTT
CATCCTGGAGCTGGCTGCTGGCATCAGTGGCTATGTGCTGCGCAATGACG
CCTCCGATTTGATCAAAACTTCTCTGACTTACTCGCTGAACGAGTATAAC
AGTATCAATCCAAATGCGACCACGAAACTCTGGGATGACATCCAGGATGA
GTTCGAGTGCTGTGGTGTGACCTCATACAACGACTGGATCACCGCCTTCC
CTAACGGCGACCTGCCCATCTCCTGCTGCAACGTTCATGTCGGCGCAGTG
GGCACATTCACCTGCAATAATGCTCAGTCCAGCGTGGCAGACCGGCACAA
AGTTGGATGCCTCGACGGATTCTCCGGATACATTTCCGCCCATGCGGTCA
GCCTAGGAGCTGCAGGGGTGGTCATTGCCATCCTCCAGTTCTTTGGCGTA
ATCTTTGCCTGCTACATTGCACGTGAGATTAAAATCCGTAATGGAATTAC
TGGTTTTATGGCAAGCTTTCTAGACC
BO12714.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9494-PA | 747 | Tsp29Fa-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fa-RC | 1052 | CG9494-RC | 167..910 | 17..760 | 3720 | 100 | Plus |
Tsp29Fa-RB | 1247 | CG9494-RB | 362..1105 | 17..760 | 3720 | 100 | Plus |
Tsp29Fa-RA | 963 | CG9494-RA | 78..821 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8935151..8935754 | 85..688 | 3020 | 100 | Plus |
2L | 23513712 | 2L | 8935878..8935954 | 684..760 | 385 | 100 | Plus |
2L | 23513712 | 2L | 8934990..8935058 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:17:04 has no hits.
BO12714.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:33 Download gff for
BO12714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9494-PA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:08 Download gff for
BO12714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9494-PA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:26 Download gff for
BO12714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 70..821 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:37 Download gff for
BO12714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 70..821 | 9..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:37 Download gff for
BO12714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8934982..8935058 | 9..85 | 94 | -> | Plus |
2L | 8935152..8935754 | 86..688 | 100 | -> | Plus |
2L | 8935883..8935954 | 689..760 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:26 Download gff for
BO12714.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8934982..8935058 | 9..85 | 94 | -> | Plus |
arm_2L | 8935152..8935754 | 86..688 | 100 | -> | Plus |
arm_2L | 8935883..8935954 | 689..760 | 100 | | Plus |
BO12714.complete Sequence
778 bp assembled on 2006-10-11
GenBank Submission: FJ638705
> BO12714.complete
GAAGTTATCAGTCGACATGTCGCTTCTAACGGGCAGCGCCAATGCTGTGA
AGTATACGCTTTTCGGATTTAACTTAATTTTTTTGATCACTGGCATTATC
TTGATTGCCGTGGGAGCCGGAGTTGGCGCCGTCTATACGGGCTATAAGCT
CTTCCTGGCCGGAAAGTTCTTCTCGATCCCCACGTTCCTGATCGTGATTG
GATCGTTCATCATCATAATCTCTTTCTTTGGTTGCTGGGGTGCCCTGAAG
GAGAACTATTGCCTGGTGCTCAGCTTCTCGGTCATGCTGGCCATCATCTT
CATCCTGGAGCTGGCTGCTGGCATCAGTGGCTATGTGCTGCGCAATGACG
CCTCCGATTTGATCAAAACTTCTCTGACTTACTCGCTGAACGAGTATAAC
AGTATCAATCCAAATGCGACCACGAAACTCTGGGATGACATCCAGGATGA
GTTCGAGTGCTGTGGTGTGACCTCATACAACGACTGGATCACCGCCTTCC
CTAACGGCGACCTGCCCATCTCCTGCTGCAACGTTCATGTCGGCGCAGTG
GGCACATTCACCTGCAATAATGCTCAGTCCAGCGTGGCAGACCGGCACAA
AGTTGGATGCCTCGACGGATTCTCCGGATACATTTCCGCCCATGCGGTCA
GCCTAGGAGCTGCAGGGGTGGTCATTGCCATCCTCCAGTTCTTTGGCGTA
ATCTTTGCCTGCTACATTGCACGTGAGATTAAAATCCGTAATGGAATTAC
TGGTTTTATGGCAAGCTTTCTAGACCAT
BO12714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fa-RC | 747 | CG9494-PC | 1..744 | 17..760 | 3720 | 100 | Plus |
Tsp29Fa-RB | 747 | CG9494-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
Tsp29Fa-RA | 747 | CG9494-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fa-RC | 1052 | CG9494-RC | 167..910 | 17..760 | 3720 | 100 | Plus |
Tsp29Fa-RB | 1247 | CG9494-RB | 362..1105 | 17..760 | 3720 | 100 | Plus |
Tsp29Fa-RA | 963 | CG9494-RA | 78..821 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8935151..8935754 | 85..688 | 3020 | 100 | Plus |
2L | 23513712 | 2L | 8935878..8935954 | 684..760 | 385 | 100 | Plus |
2L | 23513712 | 2L | 8934990..8935058 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:40:51 has no hits.
BO12714.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:36 Download gff for
BO12714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 1..747 | 17..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:14 Download gff for
BO12714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RB | 146..897 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:26 Download gff for
BO12714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 78..821 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:37 Download gff for
BO12714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 70..821 | 9..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:10 Download gff for
BO12714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tsp29Fa-RA | 78..821 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:10 Download gff for
BO12714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8934990..8935058 | 17..85 | 100 | -> | Plus |
2L | 8935152..8935754 | 86..688 | 100 | -> | Plus |
2L | 8935883..8935954 | 689..762 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:26 Download gff for
BO12714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8934990..8935058 | 17..85 | 100 | -> | Plus |
arm_2L | 8935152..8935754 | 86..688 | 100 | -> | Plus |
arm_2L | 8935883..8935954 | 689..762 | 97 | | Plus |
BO12714.pep Sequence
Translation from 16 to 778
> BO12714.pep
MSLLTGSANAVKYTLFGFNLIFLITGIILIAVGAGVGAVYTGYKLFLAGK
FFSIPTFLIVIGSFIIIISFFGCWGALKENYCLVLSFSVMLAIIFILELA
AGISGYVLRNDASDLIKTSLTYSLNEYNSINPNATTKLWDDIQDEFECCG
VTSYNDWITAFPNGDLPISCCNVHVGAVGTFTCNNAQSSVADRHKVGCLD
GFSGYISAHAVSLGAAGVVIAILQFFGVIFACYIAREIKIRNGITGFMAS
FLDH
BO12714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tsp29Fa-PC | 248 | CG9494-PC | 1..248 | 1..248 | 1286 | 100 | Plus |
Tsp29Fa-PB | 248 | CG9494-PB | 1..248 | 1..248 | 1286 | 100 | Plus |
Tsp29Fa-PA | 248 | CG9494-PA | 1..248 | 1..248 | 1286 | 100 | Plus |
Tsp47F-PB | 239 | CG9033-PB | 9..234 | 11..239 | 400 | 37.4 | Plus |
Tsp39D-PB | 235 | CG8666-PB | 1..229 | 3..239 | 352 | 29.5 | Plus |