Clone Sequence Records
BO12716.3prime Sequence
894 bp (795 high quality bases) assembled on 2006-05-08
> BO12716.3prime
ATGGTCTAGAAAGCTTGCACTATTTGATTCCTGAGCACTTGGTGATGCAG
TTTTCTCCATTCTGCTACGAGGATCCCAAGGTTGTAGGTTCGTACTGCTG
CAAAATGCAAATACCAACATGGCCATCGTATTAAAGACAATCAGCGTCAT
CAACACCACATTCCACTCATCCTTGCTGCCAGTGTGGACCAGAGCGGCCA
CAAGATGGGGAGCTAAGAATCCGGAAAGATGGGCCATTCCATTGGCCAAT
CCCGATAGCAATCCCGCGAAGGAGGGCGCAAAGTAGAGCAGCGTGGGCCA
GTAGCCACTGAAACCCATATCCGTAGTGGCCATCATGAAGGCAAACATCA
CAAGTACTAGTATTTTGTCATCACAATTAGCCAGGATGATGACCCCAATC
AAAGAAGTGGTCAGGATGCTGCAGATCCCGTACAGCATTCTTCGCACACA
ATTCTGGTCAGGACCCACGCGTCGTTCCACATAGCTGCCACCCAGGATGC
ACATCACCTTCGAGCAGATCCCGCCCAGATACGGCGCCGCCGAGAGGAAG
CCCACCTCGCGGAGATCGAACTCCATGGCCTCGCGCATAAATCGCGGCAT
CAGTTGCACAATCACCAGGAAGGTGTAGGTGTGGAACATGTGGGTCAGGA
TGAAGGCGTAGACGGGCGGCGCGGCGAGCAGGCTCTTCCAGGGAATGGTT
ACCACTGGCTGCCGCTGCTGTCCCAATTGACTCTTGCCCTGCCTCAGGTA
ATCCACCTCCTCATTCGATATCCTTGGATGTTGCTCCACGGTGTCGTAAA
CGAGAAAGCAGCAGGCAATGCCGAATGAGAGGCCAACTCCACCGACTACA
TAGAAGGACAGTTCCCAGCCGAAGTTGCTCAGATAACTGGCCAC
BO12716.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7091-PA | 1566 | CG7091-RA | 688..1563 | 894..19 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7091-RB | 1880 | CG7091-RB | 884..1759 | 894..19 | 4380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12979536..12979819 | 705..422 | 1420 | 100 | Minus |
| 3R | 32079331 | 3R | 12979955..12980197 | 422..180 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 12979289..12979480 | 894..703 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 12980253..12980414 | 180..19 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:35 has no hits.
BO12716.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:36 Download gff for
BO12716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-PA | 688..1566 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:12 Download gff for
BO12716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-PA | 688..1566 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:49:08 Download gff for
BO12716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 884..1763 | 13..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:20:46 Download gff for
BO12716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 884..1763 | 13..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:20:46 Download gff for
BO12716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12979289..12979477 | 706..894 | 100 | -> | Minus |
| 3R | 12979536..12979818 | 423..705 | 100 | -> | Minus |
| 3R | 12979955..12980196 | 181..422 | 100 | -> | Minus |
| 3R | 12980253..12980418 | 13..180 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:49:08 Download gff for
BO12716.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8805677..8805918 | 181..422 | 100 | -> | Minus |
| arm_3R | 8805975..8806140 | 13..180 | 98 | | Minus |
| arm_3R | 8805011..8805199 | 706..894 | 100 | -> | Minus |
| arm_3R | 8805258..8805540 | 423..705 | 100 | -> | Minus |
BO12716.5prime Sequence
837 bp (812 high quality bases) assembled on 2006-05-08
> BO12716.5prime
GAAGTTATCAGTCGACATGTGCTGGAGGCTGTGCCTCCTCCACCGCTACG
CCATGAGCAGCATGTCATGGACCCTGCCACGCCTCTCGCAGTCCAGTGCA
TCCACCGCCCACGGACTAGTGGGTTCCGTTCGCCTGACCTACGCCATATG
TGCCTTTTTGGCAACTTGCCTACACGCCGCCATGAGGAACATGCTCGGCA
TGATCATCCTCAAGATGGTCATGCCCCGGCCGGAGGATGCACTGGTCGTT
CCAGCGGGGTTGAGTCGCCTAACGGAGGGCAATGTCACCTCCACGGGTCG
ATGTGGATCTCCTCGGGTCGTTTTCAATCCGCAGATTCAAGAGACTCAGT
CGGGCGACTTACCATGGACCCGAAACCAGGAGCTGACCTTCCCAGGTGTC
TACTACTATGGCTACGTGGTTTCCATCTCGCTATCCGGCTATCTGGCAGA
TCGGTGCAGCAGCAAGCGGCTGTTCATCGTGTCCCTGATCTTCGAGGCTG
TGGCCTACATACTGCTCCCAGCAATGGCGCACTCTAGTTTCGAGGCCGGA
GTGGTTGATCTGGTCATCTGTGGTTTACTGGCGGGCTGTGGAAATCCGGC
AATGTATAAACTGTTCGTGACCTGGGCTCATCCCACAGAGAGAACAGCGC
TCCTGTCCTTCGCCTACAGTGGTCTTCTGATGGGCTCCATGTTGGTTTAC
CCGGTGGCCAGTTATCTGAGCAACTTCGGCTGGGAACTGTCCTTCTATGT
AGTCGGTGGAGTTGGCCTCTCATTCGGCATTGCCTGCTGCTTTCTCGTTT
ACGACACCGTGGAGCAACATCCAAGGATATCGAATGA
BO12716.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7091-PA | 1566 | CG7091-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7091-RB | 1880 | CG7091-RB | 197..1017 | 17..837 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12978196..12978528 | 17..349 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 12979168..12979422 | 583..837 | 1275 | 100 | Plus |
| 3R | 32079331 | 3R | 12978874..12979111 | 347..584 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:42:13 has no hits.
BO12716.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:38 Download gff for
BO12716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:14 Download gff for
BO12716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:51 Download gff for
BO12716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 189..1016 | 8..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:55 Download gff for
BO12716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 189..1016 | 8..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:55 Download gff for
BO12716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12978191..12978528 | 11..349 | 98 | -> | Plus |
| 3R | 12978877..12979110 | 350..583 | 100 | -> | Plus |
| 3R | 12979169..12979421 | 584..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:51 Download gff for
BO12716.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8803913..8804250 | 11..349 | 98 | -> | Plus |
| arm_3R | 8804599..8804832 | 350..583 | 100 | -> | Plus |
| arm_3R | 8804891..8805143 | 584..836 | 100 | | Plus |
BO12716.complete Sequence
1597 bp assembled on 2006-10-11
GenBank Submission: FJ632529
> BO12716.complete
GAAGTTATCAGTCGACATGTGCTGGAGGCTGTGCCTCCTCCACCGCTACG
CCATGAGCAGCATGTCATGGACCCTGCCACGCCTCTCGCAGTCCAGTGCA
TCCACCGCCCACGGACTAGTGGGTTCCGTTCGCCTGACCTACGCCATATG
TGCCTTTTTGGCAACTTGCCTACACGCCGCCATGAGGAACATGCTCGGCA
TGATCATCCTCAAGATGGTCATGCCCCGGCCGGAGGATGCACTGGTCGTT
CCAGCGGGGTTGAGTCGCCTAACGGAGGGCAATGTCACCTCCACGGGTCG
ATGTGGATCTCCTCGGGTCGTTTTCAATCCGCAGATTCAAGAGACTCAGT
CGGGCGACTTACCATGGACCCGAAACCAGGAGCTGACCTTCCCAGGTGTC
TACTACTATGGCTACGTGGTTTCCATCTCGCTATCCGGCTATCTGGCAGA
TCGGTGCAGCAGCAAGCGGCTGTTCATCGTGTCCCTGATCTTCGAGGCTG
TGGCCTACATACTGCTCCCAGCAATGGCGCACTCTAGTTTCGAGGCCGGA
GTGGTTGATCTGGTCATCTGTGGTTTACTGGCGGGCTGTGGAAATCCGGC
AATGTATAAACTGTTCGTGACCTGGGCTCATCCCACAGAGAGAACAGCGC
TCCTGTCCTTCGCCTACAGTGGTCTTCTGATGGGCTCCATGTTGGTTTAC
CCGGTGGCCAGTTATCTGAGCAACTTCGGCTGGGAACTGTCCTTCTATGT
AGTCGGTGGAGTTGGCCTCTCATTCGGCATTGCCTGCTGCTTTCTCGTTT
ACGACACCGTGGAGCAACATCCAAGGATATCGAATGAGGAGGTGGATTAC
CTGAGGCAGGGCAAGAGTCAATTGGGACAGCAGCGGCAGCCAGTGGTAAC
CATTCCCTGGAAGAGCCTGCTCGCCGCGCCGCCCGTCTACGCCTTCATCC
TGACCCACATGTTCCACACCTACACCTTCCTGGTGATTGTGCAACTGATG
CCGCGATTTATGCGCGAGGCCATGGAGTTCGATCTCCGCGAGGTGGGCTT
CCTCTCGGCGGCGCCGTATCTGGGCGGGATCTGCTCGAAGGTGATGTGCA
TCCTGGGTGGCAGCTATGTGGAACGACGCGTGGGTCCTGACCAGAATTGT
GTGCGAAGAATGCTGTACGGGATCTGCAGCATCCTGACCACTTCTTTGAT
TGGGGTCATCATCCTGGCTAATTGTGATGACAAAATACTAGTACTTGTGA
TGTTTGCCTTCATGATGGCCACTACGGATATGGGTTTCAGTGGCTACTGG
CCCACGCTGCTCTACTTTGCGCCCTCCTTCGCGGGATTGCTATCGGGATT
GGCCAATGGAATGGCCCATCTTTCCGGATTCTTAGCTCCCCATCTTGTGG
CCGCTCTGGTCCACACTGGCAGCAAGGATGAGTGGAATGTGGTGTTGATG
ACGCTGATTGTCTTTAATACGATGGCCATGTTGGTATTTGCATTTTGCAG
CAGTACGAACCTACAACCTTGGGATCCTCGTAGCAGAATGGAGAAAACTG
CATCACCAAGTGCTCAGGAATCAAATAGTGCAAGCTTTCTAGACCAT
BO12716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7091-RB | 1530 | CG7091-PB | 1..1527 | 53..1579 | 7635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7091-RB | 1880 | CG7091-RB | 197..1759 | 17..1579 | 7815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12978196..12978528 | 17..349 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 12979168..12979480 | 583..895 | 1565 | 100 | Plus |
| 3R | 32079331 | 3R | 12979536..12979819 | 893..1176 | 1420 | 100 | Plus |
| 3R | 32079331 | 3R | 12979955..12980197 | 1176..1418 | 1215 | 100 | Plus |
| 3R | 32079331 | 3R | 12978874..12979111 | 347..584 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 12980253..12980414 | 1418..1579 | 810 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:49 has no hits.
BO12716.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:08 Download gff for
BO12716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RA | 1..1566 | 17..1580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:58 Download gff for
BO12716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 230..1804 | 8..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:46 Download gff for
BO12716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 197..1759 | 17..1581 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:09 Download gff for
BO12716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RA | 230..1804 | 8..1585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:41 Download gff for
BO12716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7091-RB | 197..1759 | 17..1581 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:41 Download gff for
BO12716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12978196..12978528 | 17..349 | 100 | -> | Plus |
| 3R | 12978877..12979110 | 350..583 | 100 | -> | Plus |
| 3R | 12979169..12979477 | 584..892 | 100 | -> | Plus |
| 3R | 12979536..12979818 | 893..1175 | 100 | -> | Plus |
| 3R | 12979955..12980196 | 1176..1417 | 100 | -> | Plus |
| 3R | 12980253..12980414 | 1418..1581 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:46 Download gff for
BO12716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8805677..8805918 | 1176..1417 | 100 | -> | Plus |
| arm_3R | 8805975..8806136 | 1418..1581 | 98 | | Plus |
| arm_3R | 8803918..8804250 | 17..349 | 100 | -> | Plus |
| arm_3R | 8804599..8804832 | 350..583 | 100 | -> | Plus |
| arm_3R | 8804891..8805199 | 584..892 | 100 | -> | Plus |
| arm_3R | 8805258..8805540 | 893..1175 | 100 | -> | Plus |
BO12716.pep Sequence
Translation from 16 to 1597
> BO12716.pep
MCWRLCLLHRYAMSSMSWTLPRLSQSSASTAHGLVGSVRLTYAICAFLAT
CLHAAMRNMLGMIILKMVMPRPEDALVVPAGLSRLTEGNVTSTGRCGSPR
VVFNPQIQETQSGDLPWTRNQELTFPGVYYYGYVVSISLSGYLADRCSSK
RLFIVSLIFEAVAYILLPAMAHSSFEAGVVDLVICGLLAGCGNPAMYKLF
VTWAHPTERTALLSFAYSGLLMGSMLVYPVASYLSNFGWELSFYVVGGVG
LSFGIACCFLVYDTVEQHPRISNEEVDYLRQGKSQLGQQRQPVVTIPWKS
LLAAPPVYAFILTHMFHTYTFLVIVQLMPRFMREAMEFDLREVGFLSAAP
YLGGICSKVMCILGGSYVERRVGPDQNCVRRMLYGICSILTTSLIGVIIL
ANCDDKILVLVMFAFMMATTDMGFSGYWPTLLYFAPSFAGLLSGLANGMA
HLSGFLAPHLVAALVHTGSKDEWNVVLMTLIVFNTMAMLVFAFCSSTNLQ
PWDPRSRMEKTASPSAQESNSASFLDH
BO12716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7091-PB | 509 | CG7091-PB | 1..509 | 13..521 | 2648 | 100 | Plus |
| CG3036-PB | 493 | CG3036-PB | 17..470 | 37..503 | 489 | 28 | Plus |
| CG3036-PA | 493 | CG3036-PA | 17..470 | 37..503 | 489 | 28 | Plus |
| MFS10-PB | 559 | CG4330-PB | 53..545 | 24..502 | 435 | 25.3 | Plus |
| MFS10-PC | 559 | CG4330-PC | 53..545 | 24..502 | 435 | 25.3 | Plus |
