Clone Sequence Records
BO12717.3prime Sequence
755 bp (754 high quality bases) assembled on 2006-05-08
> BO12717.3prime
ATGGTCTAGAAAGCTTGCTGCAGGCGTTAGCTTGGCCCTCGGTTCCAGCA
GAGCCCAGAGTCCAGCCAGCGATGAAATTGCCCCCAGGAGTCCAATTGTC
CGGGGCGTGAGACTTGTGTAACCCAGAGCCGTCAGCGGAATGAAGAAGTC
GCACGCATTCTTCACCGTGTCCACAACTATGTCTTTGTGTCCCTGCATCA
GCACGTAGGACTGCAGGGCAAGGCGCTTAAAGTCCTCCGGCGAGTTGATG
CTCGCGGGGATGCGGCAGCGCGAAATGCCGCTCTTGCTACCGGATCGATG
CAGGTCCAGTACTCTCAGGATCTCGTAGAAGTCCCGGCACAAGTTCATTA
TGATCGAGAAGAGCCAGTACTTATTGGCGATGTTGGACCAGCGCTTGGCG
TTCACCGCCGTCAGTCCCGTCCTGGCCAGCCAGAGGAAGTGATCGGCGAA
GAGGAACAGCGATTGTGACAGCTTGCTTAAGGTGAGCGTCACACGGATGT
TAAGATCCGGATGGTGAATGGTCTTCAGAGCGCCGTAGAATACATCAACG
CACTTACCAAAGCGGAGTAATTTTCGGAATGTGCTCAGGATGTATTCAAC
CGTCTTGAAGTTGTCCACAAGCGCTGGATTGGAATTGGCGGACTCCAGCG
AGTCCCACATTGCACGCGAGGCATACTGAATAAGTCGGGCGATTTTGTCC
CGTCCGCCAGCCTGATTGTTCAACTGCACCAGTTGATCCATGTCGACTGA
TAACT
BO12717.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8315-PA | 726 | CG8315-RA | 1..723 | 741..19 | 3615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex11-RA | 956 | CG8315-RA | 104..826 | 741..19 | 3615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15991497..15992047 | 19..569 | 2755 | 100 | Plus |
| 2R | 25286936 | 2R | 15992101..15992272 | 570..741 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:30:59 has no hits.
BO12717.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:39 Download gff for
BO12717.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8315-PA | 1..726 | 15..741 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:15 Download gff for
BO12717.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8315-PA | 1..726 | 15..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:25:17 Download gff for
BO12717.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex11-RA | 97..829 | 15..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:15 Download gff for
BO12717.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex11-RA | 97..829 | 15..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:15 Download gff for
BO12717.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15991494..15992047 | 15..569 | 99 | <- | Plus |
| 2R | 15992101..15992279 | 570..749 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:25:17 Download gff for
BO12717.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11878999..11879552 | 15..569 | 99 | <- | Plus |
| arm_2R | 11879606..11879784 | 570..749 | 97 | | Plus |
BO12717.5prime Sequence
755 bp (754 high quality bases) assembled on 2006-05-08
> BO12717.5prime
GAAGTTATCAGTCGACATGGATCAACTGGTGCAGTTGAACAATCAGGCTG
GCGGACGGGACAAAATCGCCCGACTTATTCAGTATGCCTCGCGTGCAATG
TGGGACTCGCTGGAGTCCGCCAATTCCAATCCAGCGCTTGTGGACAACTT
CAAGACGGTTGAATACATCCTGAGCACATTCCGAAAATTACTCCGCTTTG
GTAAGTGCGTTGATGTATTCTACGGCGCTCTGAAGACCATTCACCATCCG
GATCTTAACATCCGTGTGACGCTCACCTTAAGCAAGCTGTCACAATCGCT
GTTCCTCTTCGCCGATCACTTCCTCTGGCTGGCCAGGACGGGACTGACGG
CGGTGAACGCCAAGCGCTGGTCCAACATCGCCAATAAGTACTGGCTCTTC
TCGATCATAATGAACTTGTGCCGGGACTTCTACGAGATCCTGAGAGTACT
GGACCTGCATCGATCCGGTAGCAAGAGCGGCATTTCGCGCTGCCGCATCC
CCGCGAGCATCAACTCGCCGGAGGACTTTAAGCGCCTTGCCCTGCAGTCC
TACGTGCTGATGCAGGGACACAAAGACATAGTTGTGGACACGGTGAAGAA
TGCGTGCGACTTCTTCATTCCGCTGACGGCTCTGGGTTACACAAGTCTCA
CGCCCCGGACAATTGGACTCCTGGGGGCAATTTCATCGCTGGCTGGACTC
TGGGCTCTGCTGGAACCGAGGGCCAAGCTAACGCCTGCAGCAAGCTTTCT
AGACC
BO12717.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8315-PA | 726 | CG8315-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex11-RA | 956 | CG8315-RA | 104..826 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15991497..15992047 | 739..189 | 2755 | 100 | Minus |
| 2R | 25286936 | 2R | 15992101..15992272 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:28:04 has no hits.
BO12717.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:39 Download gff for
BO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8315-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:17 Download gff for
BO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8315-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:05:07 Download gff for
BO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex11-RA | 97..829 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:09:16 Download gff for
BO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex11-RA | 97..829 | 9..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:09:16 Download gff for
BO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15991494..15992047 | 189..743 | 99 | <- | Minus |
| 2R | 15992101..15992279 | 9..188 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:05:07 Download gff for
BO12717.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11878999..11879552 | 189..743 | 99 | <- | Minus |
| arm_2R | 11879606..11879784 | 9..188 | 97 | | Minus |
BO12717.complete Sequence
757 bp assembled on 2006-10-11
GenBank Submission: FJ638706
> BO12717.complete
GAAGTTATCAGTCGACATGGATCAACTGGTGCAGTTGAACAATCAGGCTG
GCGGACGGGACAAAATCGCCCGACTTATTCAGTATGCCTCGCGTGCAATG
TGGGACTCGCTGGAGTCCGCCAATTCCAATCCAGCGCTTGTGGACAACTT
CAAGACGGTTGAATACATCCTGAGCACATTCCGAAAATTACTCCGCTTTG
GTAAGTGCGTTGATGTATTCTACGGCGCTCTGAAGACCATTCACCATCCG
GATCTTAACATCCGTGTGACGCTCACCTTAAGCAAGCTGTCACAATCGCT
GTTCCTCTTCGCCGATCACTTCCTCTGGCTGGCCAGGACGGGACTGACGG
CGGTGAACGCCAAGCGCTGGTCCAACATCGCCAATAAGTACTGGCTCTTC
TCGATCATAATGAACTTGTGCCGGGACTTCTACGAGATCCTGAGAGTACT
GGACCTGCATCGATCCGGTAGCAAGAGCGGCATTTCGCGCTGCCGCATCC
CCGCGAGCATCAACTCGCCGGAGGACTTTAAGCGCCTTGCCCTGCAGTCC
TACGTGCTGATGCAGGGACACAAAGACATAGTTGTGGACACGGTGAAGAA
TGCGTGCGACTTCTTCATTCCGCTGACGGCTCTGGGTTACACAAGTCTCA
CGCCCCGGACAATTGGACTCCTGGGGGCAATTTCATCGCTGGCTGGACTC
TGGGCTCTGCTGGAACCGAGGGCCAAGCTAACGCCTGCAGCAAGCTTTCT
AGACCAT
BO12717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex11-RA | 726 | CG8315-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex11-RA | 956 | CG8315-RA | 104..826 | 17..739 | 3615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15991497..15992047 | 739..189 | 2755 | 100 | Minus |
| 2R | 25286936 | 2R | 15992101..15992272 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:34:21 has no hits.
BO12717.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:51 Download gff for
BO12717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8315-RA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:29 Download gff for
BO12717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8315-RA | 73..805 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:15 Download gff for
BO12717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex11-RA | 104..826 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:51 Download gff for
BO12717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8315-RA | 73..805 | 9..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:11 Download gff for
BO12717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex11-RA | 104..826 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:11 Download gff for
BO12717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15992101..15992272 | 17..188 | 100 | | Minus |
| 2R | 15991495..15992047 | 189..741 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:15 Download gff for
BO12717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11879000..11879552 | 189..741 | 99 | <- | Minus |
| arm_2R | 11879606..11879777 | 17..188 | 100 | | Minus |
BO12717.pep Sequence
Translation from 16 to 757
> BO12717.pep
MDQLVQLNNQAGGRDKIARLIQYASRAMWDSLESANSNPALVDNFKTVEY
ILSTFRKLLRFGKCVDVFYGALKTIHHPDLNIRVTLTLSKLSQSLFLFAD
HFLWLARTGLTAVNAKRWSNIANKYWLFSIIMNLCRDFYEILRVLDLHRS
GSKSGISRCRIPASINSPEDFKRLALQSYVLMQGHKDIVVDTVKNACDFF
IPLTALGYTSLTPRTIGLLGAISSLAGLWALLEPRAKLTPAASFLDH
BO12717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex11-PA | 241 | CG8315-PA | 1..241 | 1..241 | 1240 | 100 | Plus |
