Clone Sequence Records
BO12718.3prime Sequence
632 bp (631 high quality bases) assembled on 2006-05-08
> BO12718.3prime
ATGGTCTAGAAAGCTTGCGAATCGATGGTTTCCCACCGGCGAGCGGGACC
TGAAGCGTCCGGCCGACTGACCACCAGTGCGTCCGTAGCTGGCGCTACTT
CCGCTGCTGTAGCGGCTGCTGTCGCGTCCACCGCCGTAAACCTCGCGGCG
ATTGAAGCCGCTGCCGCCGCCCTCTCTGCCATTATAGCTGCTTGCACCTG
ATCGGCCGGAGCTATAGCCCCGCTCCGTGTGCCGGCTTGAGGATCCGCTG
GATCCGCGCTGCCGGAAACCGCCTCCGCCGCTACCACCGCTTGTGATGCT
GTGCCGGCCAAAGTCGCCGCGTCGTCCGCCCCTGTCCATGGGTCCGCCAC
GCCTACCCTGGCGTGGCCGCCCTTTTGAGATCTCCACGCGCAGCTGGGAG
CCGAGCAGCTCGGATCCGTTCAGTATGTCGCACGCCTTTTCGGCGTCGTC
GCGGTGCTCGAACTCGACGAACGCAAATCCCGGCGGATTGAAGGCTATCC
ACACCGAATTCAGCTTGCCATACTTTGTGAACTCCCCCTCCAGATCATCC
TTTTTCACTTTGTCGGTCAGATTGCCGACATACACCCGTGTCCCGCGCTG
ATCACCCATGCTGGACATGTCGACTGATAACT
BO12718.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5655-PA | 603 | Rsf1-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-RB | 1760 | CG5655-RB | 137..736 | 618..19 | 3000 | 100 | Minus |
| Rsf1-RA | 914 | CG5655-RA | 137..736 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:03:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10262819..10263418 | 19..618 | 3000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:03:48 has no hits.
BO12718.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:40 Download gff for
BO12718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-PA | 1..603 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:18 Download gff for
BO12718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5655-PA | 1..603 | 15..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:36 Download gff for
BO12718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 132..739 | 15..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:41 Download gff for
BO12718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 132..739 | 15..623 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:41 Download gff for
BO12718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10262816..10263423 | 15..623 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:36 Download gff for
BO12718.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10262816..10263423 | 15..623 | 99 | | Plus |
BO12718.5prime Sequence
632 bp (631 high quality bases) assembled on 2006-05-08
> BO12718.5prime
GAAGTTATCAGTCGACATGTCCAGCATGGGTGATCAGCGCGGGACACGGG
TGTATGTCGGCAATCTGACCGACAAAGTGAAAAAGGATGATCTGGAGGGG
GAGTTCACAAAGTATGGCAAGCTGAATTCGGTGTGGATAGCCTTCAATCC
GCCGGGATTTGCGTTCGTCGAGTTCGAGCACCGCGACGACGCCGAAAAGG
CGTGCGACATACTGAACGGATCCGAGCTGCTCGGCTCCCAGCTGCGCGTG
GAGATCTCAAAAGGGCGGCCACGCCAGGGTAGGCGTGGCGGACCCATGGA
CAGGGGCGGACGACGCGGCGACTTTGGCCGGCACAGCATCACAAGCGGTG
GTAGCGGCGGAGGCGGTTTCCGGCAGCGCGGATCCAGCGGATCCTCAAGC
CGGCACACGGAGCGGGGCTATAGCTCCGGCCGATCAGGTGCAAGCAGCTA
TAATGGCAGAGAGGGCGGCGGCAGCGGCTTCAATCGCCGCGAGGTTTACG
GCGGTGGACGCGACAGCAGCCGCTACAGCAGCGGAAGTAGCGCCAGCTAC
GGACGCACTGGTGGTCAGTCGGCCGGACGCTTCAGGTCCCGCTCGCCGGT
GGGAAACCATCGATTCGCAAGCTTTCTAGACC
BO12718.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5655-PA | 603 | Rsf1-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-RB | 1760 | CG5655-RB | 137..736 | 17..616 | 3000 | 100 | Plus |
| Rsf1-RA | 914 | CG5655-RA | 137..736 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10262819..10263418 | 616..17 | 3000 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:14:25 has no hits.
BO12718.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:41 Download gff for
BO12718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-PA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:20 Download gff for
BO12718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5655-PA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:44 Download gff for
BO12718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 132..739 | 12..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:07 Download gff for
BO12718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 132..739 | 12..620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:07 Download gff for
BO12718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10262816..10263423 | 12..620 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:44 Download gff for
BO12718.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10262816..10263423 | 12..620 | 99 | | Minus |
BO12718.complete Sequence
634 bp assembled on 2006-10-11
GenBank Submission: FJ632530
> BO12718.complete
GAAGTTATCAGTCGACATGTCCAGCATGGGTGATCAGCGCGGGACACGGG
TGTATGTCGGCAATCTGACCGACAAAGTGAAAAAGGATGATCTGGAGGGG
GAGTTCACAAAGTATGGCAAGCTGAATTCGGTGTGGATAGCCTTCAATCC
GCCGGGATTTGCGTTCGTCGAGTTCGAGCACCGCGACGACGCCGAAAAGG
CGTGCGACATACTGAACGGATCCGAGCTGCTCGGCTCCCAGCTGCGCGTG
GAGATCTCAAAAGGGCGGCCACGCCAGGGTAGGCGTGGCGGACCCATGGA
CAGGGGCGGACGACGCGGCGACTTTGGCCGGCACAGCATCACAAGCGGTG
GTAGCGGCGGAGGCGGTTTCCGGCAGCGCGGATCCAGCGGATCCTCAAGC
CGGCACACGGAGCGGGGCTATAGCTCCGGCCGATCAGGTGCAAGCAGCTA
TAATGGCAGAGAGGGCGGCGGCAGCGGCTTCAATCGCCGCGAGGTTTACG
GCGGTGGACGCGACAGCAGCCGCTACAGCAGCGGAAGTAGCGCCAGCTAC
GGACGCACTGGTGGTCAGTCGGCCGGACGCTTCAGGTCCCGCTCGCCGGT
GGGAAACCATCGATTCGCAAGCTTTCTAGACCAT
BO12718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-RB | 603 | CG5655-PB | 1..600 | 17..616 | 3000 | 100 | Plus |
| Rsf1-RA | 603 | CG5655-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-RB | 1760 | CG5655-RB | 137..736 | 17..616 | 3000 | 100 | Plus |
| Rsf1-RA | 914 | CG5655-RA | 137..736 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10262819..10263418 | 616..17 | 3000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:15:52 has no hits.
BO12718.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:52 Download gff for
BO12718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 1..603 | 17..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:31 Download gff for
BO12718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 160..767 | 12..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:16 Download gff for
BO12718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 137..736 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:52 Download gff for
BO12718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 160..767 | 12..620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:55:55 Download gff for
BO12718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rsf1-RA | 137..736 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:55:55 Download gff for
BO12718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10262817..10263418 | 17..618 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:16 Download gff for
BO12718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10262817..10263418 | 17..618 | 99 | | Minus |
BO12718.pep Sequence
Translation from 16 to 634
> BO12718.pep
MSSMGDQRGTRVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAF
VEFEHRDDAEKACDILNGSELLGSQLRVEISKGRPRQGRRGGPMDRGGRR
GDFGRHSITSGGSGGGGFRQRGSSGSSSRHTERGYSSGRSGASSYNGREG
GGSGFNRREVYGGGRDSSRYSSGSSASYGRTGGQSAGRFRSRSPVGNHRF
ASFLDH
BO12718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rsf1-PB | 200 | CG5655-PB | 1..200 | 1..200 | 1058 | 100 | Plus |
| Rsf1-PA | 200 | CG5655-PA | 1..200 | 1..200 | 1058 | 100 | Plus |
| Rbp1-like-PC | 158 | CG1987-PC | 12..157 | 11..148 | 286 | 44.5 | Plus |
| Rbp1-like-PA | 158 | CG1987-PA | 12..157 | 11..148 | 286 | 44.5 | Plus |
| Rbp1-like-PB | 247 | CG1987-PB | 12..144 | 11..181 | 280 | 43.3 | Plus |
