Clone Sequence Records
BO12720.3prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-09
> BO12720.3prime
ATGGTCTAGAAAGCTTGCCAGGCCGCCGCGTCCTCGACCGCCGGTTGGTC
CTCCCTGCCATGCTCCGCGTCCGCCGCTGCCGCCGGGAGCTCCTGGCGGT
CCACCAGTGCCCCTTCCGCCGCCCGGAGGTCCGCCTCTTCCTCTGCCACG
AGCCTGTGCGCGCAGAATGGCCGCCTTGCCCCGTCCCGCCGTCCCACCAA
GTCCCTTGCCCGTCTGCTTCTTGAACATCGGGGCATTTTTCAGCATGTCG
GGCAGTATAAGGAATCGGATCTTGGAGCCGCGAATGTAGACGTTCTCCAG
GTTGGCGGTGCGTCCGTCTCGGTAGGTCACCGTGATCTGGGTCATTTGGC
AGTTCATGTTGTCCTCCGCCTCGATGAGTTTGCCGCGGTACACCTCGCCG
GTGATGGTTTCGCAAGTGATTATGTGGCCCTCGGCCTCGTGCAGAACTTT
AATGGGCACTCCGATAGACATGTCGACTGATAACT
BO12720.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8427-PA | 456 | SmD3-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD3-RA | 744 | CG8427-RA | 145..599 | 473..19 | 2275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12168875..12169195 | 473..153 | 1605 | 100 | Minus |
| 2R | 25286936 | 2R | 12169724..12169858 | 153..19 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:22:05 has no hits.
BO12720.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:44 Download gff for
BO12720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:24 Download gff for
BO12720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8427-PA | 1..456 | 18..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:04 Download gff for
BO12720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 140..599 | 19..478 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:54 Download gff for
BO12720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 140..599 | 19..478 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:54 Download gff for
BO12720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12168870..12169195 | 153..478 | 99 | -> | Minus |
| 2R | 12169725..12169858 | 19..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:04 Download gff for
BO12720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8056375..8056700 | 153..478 | 99 | -> | Minus |
| arm_2R | 8057230..8057363 | 19..152 | 100 | | Minus |
BO12720.5prime Sequence
485 bp (484 high quality bases) assembled on 2006-05-08
> BO12720.5prime
GAAGTTATCAGTCGACATGTCTATCGGAGTGCCCATTAAAGTTCTGCACG
AGGCCGAGGGCCACATAATCACTTGCGAAACCATCACCGGCGAGGTGTAC
CGCGGCAAACTCATCGAGGCGGAGGACAACATGAACTGCCAAATGACCCA
GATCACGGTGACCTACCGAGACGGACGCACCGCCAACCTGGAGAACGTCT
ACATTCGCGGCTCCAAGATCCGATTCCTTATACTGCCCGACATGCTGAAA
AATGCCCCGATGTTCAAGAAGCAGACGGGCAAGGGACTTGGTGGGACGGC
GGGACGGGGCAAGGCGGCCATTCTGCGCGCACAGGCTCGTGGCAGAGGAA
GAGGCGGACCTCCGGGCGGCGGAAGGGGCACTGGTGGACCGCCAGGAGCT
CCCGGCGGCAGCGGCGGACGCGGAGCATGGCAGGGAGGACCAACCGGCGG
TCGAGGACGCGGCGGCCTGGCAAGCTTTCTAGACC
BO12720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8427-PA | 456 | SmD3-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD3-RA | 744 | CG8427-RA | 145..599 | 15..469 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12168875..12169195 | 15..335 | 1605 | 100 | Plus |
| 2R | 25286936 | 2R | 12169724..12169858 | 335..469 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:46:27 has no hits.
BO12720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:45 Download gff for
BO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:25 Download gff for
BO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8427-PA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 01:01:49 Download gff for
BO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 140..599 | 10..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:34 Download gff for
BO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 140..599 | 10..469 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:34 Download gff for
BO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12168870..12169195 | 10..335 | 99 | -> | Plus |
| 2R | 12169725..12169858 | 336..469 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 01:01:49 Download gff for
BO12720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8056375..8056700 | 10..335 | 99 | -> | Plus |
| arm_2R | 8057230..8057363 | 336..469 | 100 | | Plus |
BO12720.complete Sequence
487 bp assembled on 2006-10-11
GenBank Submission: FJ632531
> BO12720.complete
GAAGTTATCAGTCGACATGTCTATCGGAGTGCCCATTAAAGTTCTGCACG
AGGCCGAGGGCCACATAATCACTTGCGAAACCATCACCGGCGAGGTGTAC
CGCGGCAAACTCATCGAGGCGGAGGACAACATGAACTGCCAAATGACCCA
GATCACGGTGACCTACCGAGACGGACGCACCGCCAACCTGGAGAACGTCT
ACATTCGCGGCTCCAAGATCCGATTCCTTATACTGCCCGACATGCTGAAA
AATGCCCCGATGTTCAAGAAGCAGACGGGCAAGGGACTTGGTGGGACGGC
GGGACGGGGCAAGGCGGCCATTCTGCGCGCACAGGCTCGTGGCAGAGGAA
GAGGCGGACCTCCGGGCGGCGGAAGGGGCACTGGTGGACCGCCAGGAGCT
CCCGGCGGCAGCGGCGGACGCGGAGCATGGCAGGGAGGACCAACCGGCGG
TCGAGGACGCGGCGGCCTGGCAAGCTTTCTAGACCAT
BO12720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD3-RA | 456 | CG8427-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD3-RA | 744 | CG8427-RA | 145..599 | 15..469 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12168875..12169195 | 15..335 | 1605 | 100 | Plus |
| 2R | 25286936 | 2R | 12169724..12169858 | 335..469 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:52:29 has no hits.
BO12720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:06 Download gff for
BO12720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 1..456 | 17..470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:49 Download gff for
BO12720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 145..604 | 10..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:09 Download gff for
BO12720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 147..599 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:06 Download gff for
BO12720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 145..604 | 10..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:37 Download gff for
BO12720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SmD3-RA | 147..599 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:37 Download gff for
BO12720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12168877..12169195 | 17..335 | 100 | -> | Plus |
| 2R | 12169725..12169858 | 336..471 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:09 Download gff for
BO12720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8056382..8056700 | 17..335 | 100 | -> | Plus |
| arm_2R | 8057230..8057363 | 336..471 | 98 | | Plus |
BO12720.pep Sequence
Translation from 16 to 487
> BO12720.pep
MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTY
RDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKKQTGKGLGGTAGRGKA
AILRAQARGRGRGGPPGGGRGTGGPPGAPGGSGGRGAWQGGPTGGRGRGG
LASFLDH
BO12720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SmD3-PA | 151 | CG8427-PA | 1..151 | 1..151 | 805 | 100 | Plus |
| CG17768-PB | 154 | CG17768-PB | 2..143 | 5..147 | 157 | 29.9 | Plus |
| CG17768-PA | 154 | CG17768-PA | 2..143 | 5..147 | 157 | 29.9 | Plus |
| SmD1-PA | 124 | CG10753-PA | 8..118 | 7..121 | 139 | 32.5 | Plus |
