Clone Sequence Records
BO12721.3prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-09
> BO12721.3prime
ATGGTCTAGAAAGCTTGCGTTCGGCTGGGCGGTTGGTCTGCTGGGAAGTT
GGGCAGTTAAGGTGGTTGGTTCAACAGCCGCTTGTCTGATTCTCCAAAGG
ACCAAGCCCCCAAGGACCGAGGACCAAGGACCAAGCGAACGGCACCGGAC
TGCATTCATTTGTAAATATTGTAGCCTGCAGGATACGTATGCAAATAACA
TTAAGAGCATCGCATAGAAAAATGTAATTTCACTTGATTTGCTCAAAAAT
GCAAACAGAGACGAGGAGGCACACACACACACACACACACACATAGAAAC
CGAACACACACCGACACGAAGGACACGTACACGGGCAGACAGATAACGGG
CCATAACATGGTAGAAAGTTAAACGAAGATAAGAGCCAGAAGAAAGGAAG
GAAGGAAGCAGCGGCAACAGGAAAAAGTCAGCTCCTGACAGGATATGAAG
CGAAGGACGAGGGGCCAGCCCAGCTGGAGGCATGTCGACTGATAACT
BO12721.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31386-PA | 468 | CG31386-RA | 1..465 | 483..19 | 2325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 19:23:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:23:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11270482..11270946 | 19..483 | 2325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:23:21 has no hits.
BO12721.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:46 Download gff for
BO12721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-PA | 1..468 | 15..483 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:27 Download gff for
BO12721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-PA | 1..468 | 15..483 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:03:22 Download gff for
BO12721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11270477..11270953 | 12..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:03:22 Download gff for
BO12721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11270477..11270953 | 12..492 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:41 Download gff for
BO12721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7096199..7096675 | 12..492 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:41 Download gff for
BO12721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7096199..7096675 | 12..492 | 98 | | Plus |
BO12721.5prime Sequence
497 bp (496 high quality bases) assembled on 2006-05-08
> BO12721.5prime
GAAGTTATCAGTCGACATGCCTCCAGCTGGGCTGGCCCCTCGTCCTTCGC
TTCATATCCTGTCAGGAGCTGACTTTTTCCTGTTGCCGCTGCTTCCTTCC
TTCCTTTCTTCTGGCTCTTATCTTCGTTTAACTTTCTACCATGTTATGGC
CCGTTATCTGTCTGCCCGTGTACGTGTCCTTCGTGTCGGTGTGTGTTCGG
TTTCTATGTGTGTGTGTGTGTGTGTGTGTGCCTCCTCGTCTCTGTTTGCA
TTTTTGAGCAAATCAAGTGAAATTACATTTTTCTATGCGATGCTCTTAAT
GTTATTTGCATACGTATCCTGCAGGCTACAATATTTACAAATGAATGCAG
TCCGGTGCCGTTCGCTTGGTCCTTGGTCCTCGGTCCTTGGGGGCTTGGTC
CTTTGGAGAATCAGACAAGCGGCTGTTGAACCAACCACCTTAACTGCCCA
ACTTCCCAGCAGACCAACCGCCCAGCCGAACGCAAGCTTTCTAGACC
BO12721.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31386-PA | 468 | CG31386-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 21:01:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11270482..11270946 | 481..17 | 2325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:01:20 has no hits.
BO12721.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:47 Download gff for
BO12721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-PA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:28 Download gff for
BO12721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-PA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:11 Download gff for
BO12721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11270477..11270953 | 8..488 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:11 Download gff for
BO12721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11270477..11270953 | 8..488 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:08 Download gff for
BO12721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7096199..7096675 | 8..488 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:08 Download gff for
BO12721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7096199..7096675 | 8..488 | 98 | | Minus |
BO12721.complete Sequence
499 bp assembled on 2006-10-11
GenBank Submission: FJ632532
> BO12721.complete
GAAGTTATCAGTCGACATGCCTCCAGCTGGGCTGGCCCCTCGTCCTTCGC
TTCATATCCTGTCAGGAGCTGACTTTTTCCTGTTGCCGCTGCTTCCTTCC
TTCCTTTCTTCTGGCTCTTATCTTCGTTTAACTTTCTACCATGTTATGGC
CCGTTATCTGTCTGCCCGTGTACGTGTCCTTCGTGTCGGTGTGTGTTCGG
TTTCTATGTGTGTGTGTGTGTGTGTGTGTGCCTCCTCGTCTCTGTTTGCA
TTTTTGAGCAAATCAAGTGAAATTACATTTTTCTATGCGATGCTCTTAAT
GTTATTTGCATACGTATCCTGCAGGCTACAATATTTACAAATGAATGCAG
TCCGGTGCCGTTCGCTTGGTCCTTGGTCCTCGGTCCTTGGGGGCTTGGTC
CTTTGGAGAATCAGACAAGCGGCTGTTGAACCAACCACCTTAACTGCCCA
ACTTCCCAGCAGACCAACCGCCCAGCCGAACGCAAGCTTTCTAGACCAT
BO12721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 00:56:50 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 00:56:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11270482..11270946 | 481..17 | 2325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:56:49 has no hits.
BO12721.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:53 Download gff for
BO12721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1..468 | 17..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:32 Download gff for
BO12721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1225..1701 | 8..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:53 Download gff for
BO12721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31386-RA | 1225..1701 | 8..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:22 Download gff for
BO12721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11270480..11270946 | 17..483 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:22 Download gff for
BO12721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11270480..11270946 | 17..483 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:31 Download gff for
BO12721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7096202..7096668 | 17..483 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:31 Download gff for
BO12721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7096202..7096668 | 17..483 | 99 | | Minus |
BO12721.pep Sequence
Translation from 16 to 499
> BO12721.pep
MPPAGLAPRPSLHILSGADFFLLPLLPSFLSSGSYLRLTFYHVMARYLSA
RVRVLRVGVCSVSMCVCVCVCASSSLFAFLSKSSEITFFYAMLLMLFAYV
SCRLQYLQMNAVRCRSLGPWSSVLGGLVLWRIRQAAVEPTTLTAQLPSRP
TAQPNASFLDH
Sequence BO12721.pep has no blast hits.