Clone BO12721 Report

Search the DGRC for BO12721

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG31386-RA
Protein status:BO12721.pep: validated full length
Sequenced Size:499

Clone Sequence Records

BO12721.3prime Sequence

497 bp (496 high quality bases) assembled on 2006-05-09

> BO12721.3prime
ATGGTCTAGAAAGCTTGCGTTCGGCTGGGCGGTTGGTCTGCTGGGAAGTT
GGGCAGTTAAGGTGGTTGGTTCAACAGCCGCTTGTCTGATTCTCCAAAGG
ACCAAGCCCCCAAGGACCGAGGACCAAGGACCAAGCGAACGGCACCGGAC
TGCATTCATTTGTAAATATTGTAGCCTGCAGGATACGTATGCAAATAACA
TTAAGAGCATCGCATAGAAAAATGTAATTTCACTTGATTTGCTCAAAAAT
GCAAACAGAGACGAGGAGGCACACACACACACACACACACACATAGAAAC
CGAACACACACCGACACGAAGGACACGTACACGGGCAGACAGATAACGGG
CCATAACATGGTAGAAAGTTAAACGAAGATAAGAGCCAGAAGAAAGGAAG
GAAGGAAGCAGCGGCAACAGGAAAAAGTCAGCTCCTGACAGGATATGAAG
CGAAGGACGAGGGGCCAGCCCAGCTGGAGGCATGTCGACTGATAACT

BO12721.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31386-PA 468 CG31386-RA 1..465 483..19 2325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 19:23:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11270482..11270946 19..483 2325 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:23:21 has no hits.

BO12721.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:46 Download gff for BO12721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31386-PA 1..468 15..483 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:27 Download gff for BO12721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31386-PA 1..468 15..483 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:03:22 Download gff for BO12721.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11270477..11270953 12..492 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:03:22 Download gff for BO12721.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11270477..11270953 12..492 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:41 Download gff for BO12721.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7096199..7096675 12..492 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:54:41 Download gff for BO12721.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7096199..7096675 12..492 98   Plus

BO12721.5prime Sequence

497 bp (496 high quality bases) assembled on 2006-05-08

> BO12721.5prime
GAAGTTATCAGTCGACATGCCTCCAGCTGGGCTGGCCCCTCGTCCTTCGC
TTCATATCCTGTCAGGAGCTGACTTTTTCCTGTTGCCGCTGCTTCCTTCC
TTCCTTTCTTCTGGCTCTTATCTTCGTTTAACTTTCTACCATGTTATGGC
CCGTTATCTGTCTGCCCGTGTACGTGTCCTTCGTGTCGGTGTGTGTTCGG
TTTCTATGTGTGTGTGTGTGTGTGTGTGTGCCTCCTCGTCTCTGTTTGCA
TTTTTGAGCAAATCAAGTGAAATTACATTTTTCTATGCGATGCTCTTAAT
GTTATTTGCATACGTATCCTGCAGGCTACAATATTTACAAATGAATGCAG
TCCGGTGCCGTTCGCTTGGTCCTTGGTCCTCGGTCCTTGGGGGCTTGGTC
CTTTGGAGAATCAGACAAGCGGCTGTTGAACCAACCACCTTAACTGCCCA
ACTTCCCAGCAGACCAACCGCCCAGCCGAACGCAAGCTTTCTAGACC

BO12721.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31386-PA 468 CG31386-RA 1..465 17..481 2325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 21:01:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11270482..11270946 481..17 2325 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:01:20 has no hits.

BO12721.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:47 Download gff for BO12721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31386-PA 1..468 17..485 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:28 Download gff for BO12721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31386-PA 1..468 17..485 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:11 Download gff for BO12721.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11270477..11270953 8..488 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:11 Download gff for BO12721.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11270477..11270953 8..488 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:08 Download gff for BO12721.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7096199..7096675 8..488 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:45:08 Download gff for BO12721.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7096199..7096675 8..488 98   Minus

BO12721.complete Sequence

499 bp assembled on 2006-10-11

GenBank Submission: FJ632532

> BO12721.complete
GAAGTTATCAGTCGACATGCCTCCAGCTGGGCTGGCCCCTCGTCCTTCGC
TTCATATCCTGTCAGGAGCTGACTTTTTCCTGTTGCCGCTGCTTCCTTCC
TTCCTTTCTTCTGGCTCTTATCTTCGTTTAACTTTCTACCATGTTATGGC
CCGTTATCTGTCTGCCCGTGTACGTGTCCTTCGTGTCGGTGTGTGTTCGG
TTTCTATGTGTGTGTGTGTGTGTGTGTGTGCCTCCTCGTCTCTGTTTGCA
TTTTTGAGCAAATCAAGTGAAATTACATTTTTCTATGCGATGCTCTTAAT
GTTATTTGCATACGTATCCTGCAGGCTACAATATTTACAAATGAATGCAG
TCCGGTGCCGTTCGCTTGGTCCTTGGTCCTCGGTCCTTGGGGGCTTGGTC
CTTTGGAGAATCAGACAAGCGGCTGTTGAACCAACCACCTTAACTGCCCA
ACTTCCCAGCAGACCAACCGCCCAGCCGAACGCAAGCTTTCTAGACCAT

BO12721.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 00:56:50 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 00:56:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11270482..11270946 481..17 2325 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:56:49 has no hits.

BO12721.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:53 Download gff for BO12721.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1..468 17..485 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:32 Download gff for BO12721.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1225..1701 8..488 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:53 Download gff for BO12721.complete
Subject Subject Range Query Range Percent Splice Strand
CG31386-RA 1225..1701 8..488 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:22 Download gff for BO12721.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11270480..11270946 17..483 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:22 Download gff for BO12721.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11270480..11270946 17..483 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:31 Download gff for BO12721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7096202..7096668 17..483 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:31 Download gff for BO12721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7096202..7096668 17..483 99   Minus

BO12721.pep Sequence

Translation from 16 to 499

> BO12721.pep
MPPAGLAPRPSLHILSGADFFLLPLLPSFLSSGSYLRLTFYHVMARYLSA
RVRVLRVGVCSVSMCVCVCVCASSSLFAFLSKSSEITFFYAMLLMLFAYV
SCRLQYLQMNAVRCRSLGPWSSVLGGLVLWRIRQAAVEPTTLTAQLPSRP
TAQPNASFLDH
Sequence BO12721.pep has no blast hits.