Clone Sequence Records
BO12723.3prime Sequence
981 bp (809 high quality bases) assembled on 2006-05-08
> BO12723.3prime
ATGGTCTAGAAAGCTTGCGTTGATCTCGCAGGGATCGTCCTTGCCGCTGA
AGTGGGCGCATGTGATCTTGGGTCCGTTGTGTACCCTGGGTATGGCGATC
CGGAAGAGCGTTCCATGCGGCATGCACACGCAAATCTTGTACTGCACACT
GCCCGTGCGGAGACCCAGCTCGGAGCTGACGATGGGAATGCGGTCCATGT
CCAGAAAGATACCCGTGCCTGCCTCCAGGATGGTGGCGCCCTGCGTGGAG
TTGATGAGAATGTGGTGCTCGGCCTGCATGTCAACGCTGGCTCCGTCGAA
GTAGACGCCCTCGGATCCCCTGATGGCCATGCGTCCGTCGCTCTCCAGCA
CCAGGGACTCGTCGATGGGACTGACGATGCCGCTGGCACTAACCACTTTG
GCCTGCAGCGCCTCCACTCCGCCCGGAATGTTATACTGCGGACGATGGGT
GGTGAAAATCGGCTGCTTGTCGACGGGGTCCTTGACCTCGAACAAGTTCG
TGGCCTGCACGAGGATACCCTCCCTGTTCAGGACGATCCTATCGCGTTCG
CTGGCTGCTCCATTGCCATTGCGGAAGACGCGCACATGGACGCCGCCCTC
GCCGTCACCAGCATCACTGCTGATGGTCACCGGGACATCCGAGAAGCCGT
GTATCTGGCCAATCGAGTTCGTCTGCACGCGCTCCAAGTCCGTGGTACCG
TAGAACTTCACCAAATCCACCTCGGGTATCACCTCCATGCCCTGGACACC
TTTGCCCAGGCGAAGCACACCCACAATGGTGAGCGTCAGCAGAAGATTGC
CAACGGTCAGCACCAGCAGCAACACCACAATGGTCCAGAAGGCGAACGTG
TTGCGTCCCTGGTGACCCGGATGCAGGCGGGAGCAGCTGTCGCTGTTGTA
CTTCTCATCGAAGTAATCCGCCCGTATCCGTTTTCGAGTCGTCGCGACAA
AAGTCCAGGTCCGGGACAACTCCTCCAATGG
BO12723.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5657-PA | 1059 | Scgbeta-RA | 157..1056 | 918..19 | 4500 | 100 | Minus |
| CG5657-PA | 1059 | Scgbeta-RA | 95..157 | 981..919 | 265 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgbeta-RA | 1194 | CG5657-RA | 181..1142 | 981..19 | 4760 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12421288..12422249 | 19..981 | 4735 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:04:01 has no hits.
BO12723.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:48 Download gff for
BO12723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5657-PA | 95..1059 | 15..981 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:29 Download gff for
BO12723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5657-PA | 95..1059 | 15..981 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:42:38 Download gff for
BO12723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 181..1146 | 14..981 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:25:43 Download gff for
BO12723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 181..1146 | 14..981 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:25:43 Download gff for
BO12723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12421284..12422249 | 14..981 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:42:38 Download gff for
BO12723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8247006..8247971 | 14..981 | 99 | | Plus |
BO12723.5prime Sequence
835 bp (834 high quality bases) assembled on 2006-05-08
> BO12723.5prime
GAAGTTATCAGTCGACATGATGCACACATTCGAGAACACCTTCATCCGTG
GACCATCGCCGTCATATTCCGACGACGCCAACTCGGAGAACGCGCTCTCT
GTGACGCTGCCCATTGGAGGAGTTGTGCCGGACTTGGACTTTTGTCGCGA
CGACTCGAAAACGGATACGGGCGATTACTTCGATGAGAAGTACAACAGCG
ACAGCTGCTCCCGCCTGCATCCGGGTCACCAGGGACGCAACACGTTCGCC
TTCTGGACCATTGTGGTGTTGCTGCTGGTGCTGACCGTTGGCAATCTTCT
GCTGACGCTCACCATTGTGGGTGTGCTTCGCCTGGGCAAAGGTGTCCAGG
GCATGGAGGTGATACCCGAGGTGGATTTGGTGAAGTTCTACGGTACCACG
GACTTGGAGCGCGTGCAGACGAACTCGATTGGCCAGATACACGGCTTCTC
GGATGTCCCGGTGACCATCAGCAGTGATGCTGGTGACGGCGAGGGCGGCG
TCCATGTGCGCGTCTTCCGCAATGGCAATGGAGCAGCCAGCGAACGCGAT
AGGATCGTCCTGAACAGGGAGGGTATCCTCGTGCAGGCCACGAACTTGTT
CGAGGTCAAGGACCCCGTCGACAAGCAGCCGATTTTCACCACCCATCGTC
CGCAGTATAACATTCCGGGCGGAGTGGAGGCGCTGCAGGCCAAAGTGGTT
AGTGCCAGCGGCATCGTCAGTCCCATCGACGAGTCCCTGGTGCTGGAGAG
CGACGGACGCATGGCCATCAGGGGATCCGAGGGCGTCTACTTCGACGGAG
CCAGCGTTGACATGCAGGCCGAGCACCACATTCTC
BO12723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5657-PA | 1059 | Scgbeta-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgbeta-RA | 1194 | CG5657-RA | 87..905 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:29:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12421525..12422343 | 835..17 | 4095 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:29:34 has no hits.
BO12723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:49 Download gff for
BO12723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5657-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:30 Download gff for
BO12723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5657-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:54 Download gff for
BO12723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 79..905 | 8..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:57:21 Download gff for
BO12723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 79..905 | 8..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:57:21 Download gff for
BO12723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12421525..12422351 | 8..835 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:54 Download gff for
BO12723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8247247..8248073 | 8..835 | 99 | | Minus |
BO12723.complete Sequence
1090 bp assembled on 2006-10-11
GenBank Submission: FJ632533
> BO12723.complete
GAAGTTATCAGTCGACATGATGCACACATTCGAGAACACCTTCATCCGTG
GACCATCGCCGTCATATTCCGACGACGCCAACTCGGAGAACGCGCTCTCT
GTGACGCTGCCCATTGGAGGAGTTGTGCCGGACTTGGACTTTTGTCGCGA
CGACTCGAAAACGGATACGGGCGATTACTTCGATGAGAAGTACAACAGCG
ACAGCTGCTCCCGCCTGCATCCGGGTCACCAGGGACGCAACACGTTCGCC
TTCTGGACCATTGTGGTGTTGCTGCTGGTGCTGACCGTTGGCAATCTTCT
GCTGACGCTCACCATTGTGGGTGTGCTTCGCCTGGGCAAAGGTGTCCAGG
GCATGGAGGTGATACCCGAGGTGGATTTGGTGAAGTTCTACGGTACCACG
GACTTGGAGCGCGTGCAGACGAACTCGATTGGCCAGATACACGGCTTCTC
GGATGTCCCGGTGACCATCAGCAGTGATGCTGGTGACGGCGAGGGCGGCG
TCCATGTGCGCGTCTTCCGCAATGGCAATGGAGCAGCCAGCGAACGCGAT
AGGATCGTCCTGAACAGGGAGGGTATCCTCGTGCAGGCCACGAACTTGTT
CGAGGTCAAGGACCCCGTCGACAAGCAGCCGATTTTCACCACCCATCGTC
CGCAGTATAACATTCCGGGCGGAGTGGAGGCGCTGCAGGCCAAAGTGGTT
AGTGCCAGCGGCATCGTCAGTCCCATCGACGAGTCCCTGGTGCTGGAGAG
CGACGGACGCATGGCCATCAGGGGATCCGAGGGCGTCTACTTCGACGGAG
CCAGCGTTGACATGCAGGCCGAGCACCACATTCTCATCAACTCCACGCAG
GGCGCCACCATCCTGGAGGCAGGCACGGGTATCTTTCTGGACATGGACCG
CATTCCCATCGTCAGCTCCGAGCTGGGTCTCCGCACGGGCAGTGTGCAGT
ACAAGATTTGCGTGTGCATGCCGCATGGAACGCTCTTCCGGATCGCCATA
CCCAGGGTACACAACGGACCCAAGATCACATGCGCCCACTTCAGCGGCAA
GGACGATCCCTGCGAGATCAACGCAAGCTTTCTAGACCAT
BO12723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgbeta-RA | 1059 | CG5657-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgbeta-RA | 1194 | CG5657-RA | 87..1142 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12421288..12422343 | 1072..17 | 5280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:46:38 has no hits.
BO12723.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:55 Download gff for
BO12723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 1..1059 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:36 Download gff for
BO12723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 79..1146 | 8..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:53 Download gff for
BO12723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 87..1142 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:55 Download gff for
BO12723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 79..1146 | 8..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:30 Download gff for
BO12723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgbeta-RA | 87..1142 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:30 Download gff for
BO12723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12421286..12422343 | 17..1074 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:53 Download gff for
BO12723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8247008..8248065 | 17..1074 | 99 | | Minus |
BO12723.pep Sequence
Translation from 16 to 1090
> BO12723.pep
MMHTFENTFIRGPSPSYSDDANSENALSVTLPIGGVVPDLDFCRDDSKTD
TGDYFDEKYNSDSCSRLHPGHQGRNTFAFWTIVVLLLVLTVGNLLLTLTI
VGVLRLGKGVQGMEVIPEVDLVKFYGTTDLERVQTNSIGQIHGFSDVPVT
ISSDAGDGEGGVHVRVFRNGNGAASERDRIVLNREGILVQATNLFEVKDP
VDKQPIFTTHRPQYNIPGGVEALQAKVVSASGIVSPIDESLVLESDGRMA
IRGSEGVYFDGASVDMQAEHHILINSTQGATILEAGTGIFLDMDRIPIVS
SELGLRTGSVQYKICVCMPHGTLFRIAIPRVHNGPKITCAHFSGKDDPCE
INASFLDH
BO12723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgbeta-PA | 352 | CG5657-PA | 1..352 | 1..352 | 1832 | 100 | Plus |
