Clone Sequence Records
BO12724.3prime Sequence
458 bp (457 high quality bases) assembled on 2006-05-08
> BO12724.3prime
ATGGTCTAGAAAGCTTGCATGTCTATGATGTCCATGATGTTCGTGGTGTC
CATGGTGCTCATGATGTTCACGGTGATGATCGCCATGATGTTCCGGATAT
TCATGAGGATTTTCGTGAAAATGACCGGACTCAACTGGATTAGTTCCATG
GAAATGGCCAGATCCCACAGGACTTCCGTAACCAGGCTGATATTGGTTTG
GAGAACCTTGTCCAGCGAATCCTCCTTGACCCGGGTGGACTCCGCCTTGA
CCAATTCCCACCTGGCCACCAACTCCACCCTGTCCAGTGAATCCTATTTG
TCCACCAAAACCTGCTTGCCCGCCGATTCCTCCGAATCCTCCAAATCCTC
CTTGCCCTCCATATCCTCCTTGTCCAACTTGGCCGAATCCATTCTGAGCG
TTCACAGCGGTCACCAGTGCAAACAGAGCAATCAGTAGTTTCATGTCGAC
TGATAACT
BO12724.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4922-PA | 429 | sala-RA | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43355-RC | 1697 | CG43355-RC | 1028..1453 | 444..19 | 2130 | 100 | Minus |
sala-RC | 1697 | CG4922-RC | 1028..1453 | 444..19 | 2130 | 100 | Minus |
sala-RA | 698 | CG4922-RA | 29..454 | 444..19 | 2130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11486284..11486705 | 440..19 | 2080 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-10 16:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2429..2451 | 449..427 | 106 | 95.7 | Minus |
BO12724.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:50 Download gff for
BO12724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-PA | 1..429 | 18..444 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:32 Download gff for
BO12724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4922-PA | 1..429 | 18..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:41:17 Download gff for
BO12724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 20..454 | 19..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:20 Download gff for
BO12724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 20..454 | 19..453 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:20 Download gff for
BO12724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11486282..11486705 | 19..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:41:17 Download gff for
BO12724.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11486282..11486705 | 19..444 | 99 | | Minus |
BO12724.5prime Sequence
458 bp (457 high quality bases) assembled on 2006-05-08
> BO12724.5prime
GAAGTTATCAGTCGACATGAAACTACTGATTGCTCTGTTTGCACTGGTGA
CCGCTGTGAACGCTCAGAATGGATTCGGCCAAGTTGGACAAGGAGGATAT
GGAGGGCAAGGAGGATTTGGAGGATTCGGAGGAATCGGCGGGCAAGCAGG
TTTTGGTGGACAAATAGGATTCACTGGACAGGGTGGAGTTGGTGGCCAGG
TGGGAATTGGTCAAGGCGGAGTCCACCCGGGTCAAGGAGGATTCGCTGGA
CAAGGTTCTCCAAACCAATATCAGCCTGGTTACGGAAGTCCTGTGGGATC
TGGCCATTTCCATGGAACTAATCCAGTTGAGTCCGGTCATTTTCACGAAA
ATCCTCATGAATATCCGGAACATCATGGCGATCATCACCGTGAACATCAT
GAGCACCATGGACACCACGAACATCATGGACATCATAGACATGCAAGCTT
TCTAGACC
BO12724.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4922-PA | 429 | sala-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43355-RC | 1697 | CG43355-RC | 1028..1453 | 17..442 | 2130 | 100 | Plus |
sala-RC | 1697 | CG4922-RC | 1028..1453 | 17..442 | 2130 | 100 | Plus |
sala-RA | 698 | CG4922-RA | 29..454 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11486284..11486705 | 21..442 | 2080 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-10 20:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2429..2451 | 12..34 | 106 | 95.7 | Plus |
BO12724.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:51 Download gff for
BO12724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-PA | 1..429 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:33 Download gff for
BO12724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4922-PA | 1..429 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:48 Download gff for
BO12724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 20..454 | 8..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:47 Download gff for
BO12724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 20..454 | 8..442 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:47 Download gff for
BO12724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11486282..11486705 | 17..442 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:48 Download gff for
BO12724.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11486282..11486705 | 17..442 | 99 | | Plus |
BO12724.complete Sequence
460 bp assembled on 2006-10-11
GenBank Submission: FJ632534
> BO12724.complete
GAAGTTATCAGTCGACATGAAACTACTGATTGCTCTGTTTGCACTGGTGA
CCGCTGTGAACGCTCAGAATGGATTCGGCCAAGTTGGACAAGGAGGATAT
GGAGGGCAAGGAGGATTTGGAGGATTCGGAGGAATCGGCGGGCAAGCAGG
TTTTGGTGGACAAATAGGATTCACTGGACAGGGTGGAGTTGGTGGCCAGG
TGGGAATTGGTCAAGGCGGAGTCCACCCGGGTCAAGGAGGATTCGCTGGA
CAAGGTTCTCCAAACCAATATCAGCCTGGTTACGGAAGTCCTGTGGGATC
TGGCCATTTCCATGGAACTAATCCAGTTGAGTCCGGTCATTTTCACGAAA
ATCCTCATGAATATCCGGAACATCATGGCGATCATCACCGTGAACATCAT
GAGCACCATGGACACCACGAACATCATGGACATCATAGACATGCAAGCTT
TCTAGACCAT
BO12724.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sala-RC | 429 | CG4922-PC | 1..426 | 17..442 | 2130 | 100 | Plus |
sala-RA | 429 | CG4922-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43355-RC | 1697 | CG43355-RC | 1028..1453 | 17..442 | 2130 | 100 | Plus |
sala-RC | 1697 | CG4922-RC | 1028..1453 | 17..442 | 2130 | 100 | Plus |
sala-RA | 698 | CG4922-RA | 29..454 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11486284..11486705 | 21..442 | 2080 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 01:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2429..2451 | 12..34 | 106 | 95.7 | Plus |
BO12724.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:56 Download gff for
BO12724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 1..429 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:37 Download gff for
BO12724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 13..447 | 8..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:27 Download gff for
BO12724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 29..454 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:56 Download gff for
BO12724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 13..447 | 8..442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:22 Download gff for
BO12724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sala-RA | 29..454 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:22 Download gff for
BO12724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11486282..11486705 | 17..444 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:27 Download gff for
BO12724.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11486282..11486705 | 17..444 | 98 | | Plus |
BO12724.pep Sequence
Translation from 16 to 460
> BO12724.pep
MKLLIALFALVTAVNAQNGFGQVGQGGYGGQGGFGGFGGIGGQAGFGGQI
GFTGQGGVGGQVGIGQGGVHPGQGGFAGQGSPNQYQPGYGSPVGSGHFHG
TNPVESGHFHENPHEYPEHHGDHHREHHEHHGHHEHHGHHRHASFLDH
BO12724.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sala-PC | 142 | CG4922-PC | 1..142 | 1..142 | 826 | 100 | Plus |
sala-PA | 142 | CG4922-PA | 1..142 | 1..142 | 826 | 100 | Plus |
CG8157-PB | 113 | CG8157-PB | 1..111 | 1..138 | 238 | 48.2 | Plus |
CG8157-PA | 113 | CG8157-PA | 1..111 | 1..138 | 238 | 48.2 | Plus |
CG7299-PC | 177 | CG7299-PC | 68..131 | 17..83 | 203 | 61.2 | Plus |