Clone BO12724 Report

Search the DGRC for BO12724

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:24
Vector:pDNR-Dual
Associated Gene/Transcriptsala-RA
Protein status:BO12724.pep: validated full length
Sequenced Size:460

Clone Sequence Records

BO12724.3prime Sequence

458 bp (457 high quality bases) assembled on 2006-05-08

> BO12724.3prime
ATGGTCTAGAAAGCTTGCATGTCTATGATGTCCATGATGTTCGTGGTGTC
CATGGTGCTCATGATGTTCACGGTGATGATCGCCATGATGTTCCGGATAT
TCATGAGGATTTTCGTGAAAATGACCGGACTCAACTGGATTAGTTCCATG
GAAATGGCCAGATCCCACAGGACTTCCGTAACCAGGCTGATATTGGTTTG
GAGAACCTTGTCCAGCGAATCCTCCTTGACCCGGGTGGACTCCGCCTTGA
CCAATTCCCACCTGGCCACCAACTCCACCCTGTCCAGTGAATCCTATTTG
TCCACCAAAACCTGCTTGCCCGCCGATTCCTCCGAATCCTCCAAATCCTC
CTTGCCCTCCATATCCTCCTTGTCCAACTTGGCCGAATCCATTCTGAGCG
TTCACAGCGGTCACCAGTGCAAACAGAGCAATCAGTAGTTTCATGTCGAC
TGATAACT

BO12724.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4922-PA 429 sala-RA 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG43355-RC 1697 CG43355-RC 1028..1453 444..19 2130 100 Minus
sala-RC 1697 CG4922-RC 1028..1453 444..19 2130 100 Minus
sala-RA 698 CG4922-RA 29..454 444..19 2130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11486284..11486705 440..19 2080 99.5 Minus
Blast to na_te.dros performed 2015-02-10 16:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2429..2451 449..427 106 95.7 Minus

BO12724.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:50 Download gff for BO12724.3prime
Subject Subject Range Query Range Percent Splice Strand
sala-PA 1..429 18..444 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:32 Download gff for BO12724.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4922-PA 1..429 18..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:41:17 Download gff for BO12724.3prime
Subject Subject Range Query Range Percent Splice Strand
sala-RA 20..454 19..453 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:56:20 Download gff for BO12724.3prime
Subject Subject Range Query Range Percent Splice Strand
sala-RA 20..454 19..453 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:56:20 Download gff for BO12724.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11486282..11486705 19..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:41:17 Download gff for BO12724.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11486282..11486705 19..444 99   Minus

BO12724.5prime Sequence

458 bp (457 high quality bases) assembled on 2006-05-08

> BO12724.5prime
GAAGTTATCAGTCGACATGAAACTACTGATTGCTCTGTTTGCACTGGTGA
CCGCTGTGAACGCTCAGAATGGATTCGGCCAAGTTGGACAAGGAGGATAT
GGAGGGCAAGGAGGATTTGGAGGATTCGGAGGAATCGGCGGGCAAGCAGG
TTTTGGTGGACAAATAGGATTCACTGGACAGGGTGGAGTTGGTGGCCAGG
TGGGAATTGGTCAAGGCGGAGTCCACCCGGGTCAAGGAGGATTCGCTGGA
CAAGGTTCTCCAAACCAATATCAGCCTGGTTACGGAAGTCCTGTGGGATC
TGGCCATTTCCATGGAACTAATCCAGTTGAGTCCGGTCATTTTCACGAAA
ATCCTCATGAATATCCGGAACATCATGGCGATCATCACCGTGAACATCAT
GAGCACCATGGACACCACGAACATCATGGACATCATAGACATGCAAGCTT
TCTAGACC

BO12724.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4922-PA 429 sala-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG43355-RC 1697 CG43355-RC 1028..1453 17..442 2130 100 Plus
sala-RC 1697 CG4922-RC 1028..1453 17..442 2130 100 Plus
sala-RA 698 CG4922-RA 29..454 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:41:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11486284..11486705 21..442 2080 99.5 Plus
Blast to na_te.dros performed 2015-02-10 20:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2429..2451 12..34 106 95.7 Plus

BO12724.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:51 Download gff for BO12724.5prime
Subject Subject Range Query Range Percent Splice Strand
sala-PA 1..429 17..443 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:33 Download gff for BO12724.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4922-PA 1..429 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:43:48 Download gff for BO12724.5prime
Subject Subject Range Query Range Percent Splice Strand
sala-RA 20..454 8..442 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:47 Download gff for BO12724.5prime
Subject Subject Range Query Range Percent Splice Strand
sala-RA 20..454 8..442 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:47 Download gff for BO12724.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11486282..11486705 17..442 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:43:48 Download gff for BO12724.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11486282..11486705 17..442 99   Plus

BO12724.complete Sequence

460 bp assembled on 2006-10-11

GenBank Submission: FJ632534

> BO12724.complete
GAAGTTATCAGTCGACATGAAACTACTGATTGCTCTGTTTGCACTGGTGA
CCGCTGTGAACGCTCAGAATGGATTCGGCCAAGTTGGACAAGGAGGATAT
GGAGGGCAAGGAGGATTTGGAGGATTCGGAGGAATCGGCGGGCAAGCAGG
TTTTGGTGGACAAATAGGATTCACTGGACAGGGTGGAGTTGGTGGCCAGG
TGGGAATTGGTCAAGGCGGAGTCCACCCGGGTCAAGGAGGATTCGCTGGA
CAAGGTTCTCCAAACCAATATCAGCCTGGTTACGGAAGTCCTGTGGGATC
TGGCCATTTCCATGGAACTAATCCAGTTGAGTCCGGTCATTTTCACGAAA
ATCCTCATGAATATCCGGAACATCATGGCGATCATCACCGTGAACATCAT
GAGCACCATGGACACCACGAACATCATGGACATCATAGACATGCAAGCTT
TCTAGACCAT

BO12724.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
sala-RC 429 CG4922-PC 1..426 17..442 2130 100 Plus
sala-RA 429 CG4922-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG43355-RC 1697 CG43355-RC 1028..1453 17..442 2130 100 Plus
sala-RC 1697 CG4922-RC 1028..1453 17..442 2130 100 Plus
sala-RA 698 CG4922-RA 29..454 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11486284..11486705 21..442 2080 99.5 Plus
Blast to na_te.dros performed 2014-11-28 01:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2429..2451 12..34 106 95.7 Plus

BO12724.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:56 Download gff for BO12724.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 1..429 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:37 Download gff for BO12724.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 13..447 8..442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:27 Download gff for BO12724.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 29..454 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:56 Download gff for BO12724.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 13..447 8..442 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:22 Download gff for BO12724.complete
Subject Subject Range Query Range Percent Splice Strand
sala-RA 29..454 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:22 Download gff for BO12724.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11486282..11486705 17..444 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:27 Download gff for BO12724.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11486282..11486705 17..444 98   Plus

BO12724.pep Sequence

Translation from 16 to 460

> BO12724.pep
MKLLIALFALVTAVNAQNGFGQVGQGGYGGQGGFGGFGGIGGQAGFGGQI
GFTGQGGVGGQVGIGQGGVHPGQGGFAGQGSPNQYQPGYGSPVGSGHFHG
TNPVESGHFHENPHEYPEHHGDHHREHHEHHGHHEHHGHHRHASFLDH

BO12724.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
sala-PC 142 CG4922-PC 1..142 1..142 826 100 Plus
sala-PA 142 CG4922-PA 1..142 1..142 826 100 Plus
CG8157-PB 113 CG8157-PB 1..111 1..138 238 48.2 Plus
CG8157-PA 113 CG8157-PA 1..111 1..138 238 48.2 Plus
CG7299-PC 177 CG7299-PC 68..131 17..83 203 61.2 Plus