Clone Sequence Records
BO12726.3prime Sequence
719 bp (718 high quality bases) assembled on 2006-05-09
> BO12726.3prime
ATGGTCTAGAAAGCTTGCCAGTCTGACGAAGCGTGGAAAAGGGGTGATAG
TGGGCAGGGGACCGCGTCTGGGTCGAGGGGTACTGGTGAGGAAGTAGTTT
GAGAAACGGGACTGGAATCCACTTCCGAAACCAGAAGCACGGGTGGGCTG
AGGGTGTATCGCTTGAGGAGCAGGATGAACGGAGTATTGTGGGCGGGATG
CTAGGGCTGGTTGAACAGAGTACTGCGGACGTGGAGCAGGCGGCGGGGTG
ACCTTGGGAACAGCCTTTGGAGTGACCTTGAGCACAGACGGCTGAGAGAT
CCTAACCACGGGTTTTGGCGTAGTATTAACCACTGGCCGCAGCTTGTCCT
CCGCCGGCTTGACCTCGTCTTCGAAAGGTGGCAGTAGATCCAAAGGGAGC
TGTGAAACATCCTGCTTGATGACAATGGTCTTCAACTTATCCTCCTTTGC
CAGCTGAGCTGGCTTCTGGTAGTACGATTTCTTGGTTGGCTTTGTGGCCA
GCGTTGTGGCTGGCTTCTCCGTTGTGGTCGTCGTTGTGGTTGTCGTTGTC
GTCGTCGTTGTCGTCGTGGTGCTCACTTCATCCAGCAGCGGTGGTAGCAA
GTCATTGAAAGGCAGATCCACTTTAACCGCCTTTATTTCTGACACATCAG
CTCCACACAATCCGATCAGCACTGCACAAGCAATGAGTAAGTATTTCAGT
GACATGTCGACTGATAACT
BO12726.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14598-PA | 690 | CG14598-RA | 1..687 | 705..19 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14598-RA | 1230 | CG14598-RA | 88..774 | 705..19 | 3435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7440849..7441520 | 690..19 | 3360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:05:38 has no hits.
BO12726.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:54 Download gff for
BO12726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-PA | 1..690 | 18..705 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:37 Download gff for
BO12726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-PA | 1..690 | 18..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:58:51 Download gff for
BO12726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 81..774 | 19..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:25 Download gff for
BO12726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 81..774 | 19..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:25 Download gff for
BO12726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7440849..7441520 | 19..690 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:58:51 Download gff for
BO12726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3266571..3267242 | 19..690 | 100 | | Minus |
BO12726.5prime Sequence
719 bp (718 high quality bases) assembled on 2006-05-08
> BO12726.5prime
GAAGTTATCAGTCGACATGTCACTGAAATACTTACTCATTGCTTGTGCAG
TGCTGATCGGATTGTGTGGAGCTGATGTGTCAGAAATAAAGGCGGTTAAA
GTGGATCTGCCTTTCAATGACTTGCTACCACCGCTGCTGGATGAAGTGAG
CACCACGACGACAACGACGACGACAACGACAACCACAACGACGACCACAA
CGGAGAAGCCAGCCACAACGCTGGCCACAAAGCCAACCAAGAAATCGTAC
TACCAGAAGCCAGCTCAGCTGGCAAAGGAGGATAAGTTGAAGACCATTGT
CATCAAGCAGGATGTTTCACAGCTCCCTTTGGATCTACTGCCACCTTTCG
AAGACGAGGTCAAGCCGGCGGAGGACAAGCTGCGGCCAGTGGTTAATACT
ACGCCAAAACCCGTGGTTAGGATCTCTCAGCCGTCTGTGCTCAAGGTCAC
TCCAAAGGCTGTTCCCAAGGTCACCCCGCCGCCTGCTCCACGTCCGCAGT
ACTCTGTTCAACCAGCCCTAGCATCCCGCCCACAATACTCCGTTCATCCT
GCTCCTCAAGCGATACACCCTCAGCCCACCCGTGCTTCTGGTTTCGGAAG
TGGATTCCAGTCCCGTTTCTCAAACTACTTCCTCACCAGTACCCCTCGAC
CCAGACGCGGTCCCCTGCCCACTATCACCCCTTTTCCACGCTTCGTCAGA
CTGGCAAGCTTTCTAGACC
BO12726.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14598-PA | 690 | CG14598-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14598-RA | 1230 | CG14598-RA | 88..774 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:22:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7440849..7441520 | 32..703 | 3360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:22:15 has no hits.
BO12726.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:55 Download gff for
BO12726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-PA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:38 Download gff for
BO12726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-PA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:21:29 Download gff for
BO12726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 81..774 | 10..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:26 Download gff for
BO12726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 81..774 | 10..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:26 Download gff for
BO12726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7440849..7441520 | 32..703 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:21:29 Download gff for
BO12726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3266571..3267242 | 32..703 | 100 | | Plus |
BO12726.complete Sequence
721 bp assembled on 2006-10-11
GenBank Submission: FJ632535
> BO12726.complete
GAAGTTATCAGTCGACATGTCACTGAAATACTTACTCATTGCTTGTGCAG
TGCTGATCGGATTGTGTGGAGCTGATGTGTCAGAAATAAAGGCGGTTAAA
GTGGATCTGCCTTTCAATGACTTGCTACCACCGCTGCTGGATGAAGTGAG
CACCACGACGACAACGACGACGACAACGACAACCACAACGACGACCACAA
CGGAGAAGCCAGCCACAACGCTGGCCACAAAGCCAACCAAGAAATCGTAC
TACCAGAAGCCAGCTCAGCTGGCAAAGGAGGATAAGTTGAAGACCATTGT
CATCAAGCAGGATGTTTCACAGCTCCCTTTGGATCTACTGCCACCTTTCG
AAGACGAGGTCAAGCCGGCGGAGGACAAGCTGCGGCCAGTGGTTAATACT
ACGCCAAAACCCGTGGTTAGGATCTCTCAGCCGTCTGTGCTCAAGGTCAC
TCCAAAGGCTGTTCCCAAGGTCACCCCGCCGCCTGCTCCACGTCCGCAGT
ACTCTGTTCAACCAGCCCTAGCATCCCGCCCACAATACTCCGTTCATCCT
GCTCCTCAAGCGATACACCCTCAGCCCACCCGTGCTTCTGGTTTCGGAAG
TGGATTCCAGTCCCGTTTCTCAAACTACTTCCTCACCAGTACCCCTCGAC
CCAGACGCGGTCCCCTGCCCACTATCACCCCTTTTCCACGCTTCGTCAGA
CTGGCAAGCTTTCTAGACCAT
BO12726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14598-RA | 690 | CG14598-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14598-RA | 1230 | CG14598-RA | 88..774 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7440849..7441520 | 32..703 | 3360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:28 has no hits.
BO12726.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:57 Download gff for
BO12726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:39 Download gff for
BO12726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 75..768 | 10..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:36 Download gff for
BO12726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 88..774 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:57 Download gff for
BO12726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 75..768 | 10..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:35 Download gff for
BO12726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14598-RA | 88..774 | 17..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:35 Download gff for
BO12726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7440849..7441520 | 32..705 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:36 Download gff for
BO12726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3266571..3267242 | 32..705 | 99 | | Plus |
BO12726.pep Sequence
Translation from 16 to 721
> BO12726.pep
MSLKYLLIACAVLIGLCGADVSEIKAVKVDLPFNDLLPPLLDEVSTTTTT
TTTTTTTTTTTTEKPATTLATKPTKKSYYQKPAQLAKEDKLKTIVIKQDV
SQLPLDLLPPFEDEVKPAEDKLRPVVNTTPKPVVRISQPSVLKVTPKAVP
KVTPPPAPRPQYSVQPALASRPQYSVHPAPQAIHPQPTRASGFGSGFQSR
FSNYFLTSTPRPRRGPLPTITPFPRFVRLASFLDH
BO12726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14598-PA | 229 | CG14598-PA | 1..229 | 1..229 | 1182 | 100 | Plus |
