Clone BO12727 Report

Search the DGRC for BO12727

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG13704-RA
Protein status:BO12727.pep: validated full length
Sequenced Size:442

Clone Sequence Records

BO12727.3prime Sequence

440 bp (439 high quality bases) assembled on 2006-05-09

> BO12727.3prime
ATGGTCTAGAAAGCTTGCGACAATAGCGGTGGCATGCGTTGGAGTGGGAG
TCACATTGGCCGTCTCATGAGTCTGGGCAGGAGTATAGGTTGTGGCCGTG
GCCGGATCGTGAGTCTGGGCGGGAGTATAAGGTGTGGCCGTCGCATGAGT
CTGGGCGGGCGTGTAGGAGGCCGCCGTCTGATCTGGTTCCTTGTCCAGGA
TCACCTTCTTGAGGATGAAGTAGAGGGCTCCACCAATCAGCAGCTCACCT
ACCGCTACACAAACGATGAGAGCCCATCCGGGAATAGCAAGGCCAGTGAA
GTATCTGCGGGTAAGGGTGCGTCGTCCGCGGTTCACACGTCGCGTGGCCT
CCGATTCTTGCAGGCAGCAGGCCAACAGTACCAGGCATATCACCAAGTAG
GTGGAGCACTTCTTAGCCAACTTCATGTCGACTGATAACT

BO12727.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-PA 411 CG13704-RA 1..408 426..19 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-RA 682 CG13704-RA 98..505 426..19 2040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4900415..4900692 296..19 1390 100 Minus
3L 28110227 3L 4900276..4900360 381..297 425 100 Minus
3L 28110227 3L 4898997..4899042 426..381 230 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:13:36 has no hits.

BO12727.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:56 Download gff for BO12727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13704-PA 1..411 16..426 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:40 Download gff for BO12727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13704-PA 1..411 16..426 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:14 Download gff for BO12727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 95..505 19..429 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:42 Download gff for BO12727.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 95..505 19..429 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:42 Download gff for BO12727.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4898994..4899042 381..429 97 -> Minus
3L 4900277..4900360 297..380 100 -> Minus
3L 4900415..4900692 19..296 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:14 Download gff for BO12727.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4898994..4899042 381..429 97 -> Minus
arm_3L 4900277..4900360 297..380 100 -> Minus
arm_3L 4900415..4900692 19..296 100   Minus

BO12727.5prime Sequence

440 bp (439 high quality bases) assembled on 2006-05-08

> BO12727.5prime
GAAGTTATCAGTCGACATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGG
TGATATGCCTGGTACTGTTGGCCTGCTGCCTGCAAGAATCGGAGGCCACG
CGACGTGTGAACCGCGGACGACGCACCCTTACCCGCAGATACTTCACTGG
CCTTGCTATTCCCGGATGGGCTCTCATCGTTTGTGTAGCGGTAGGTGAGC
TGCTGATTGGTGGAGCCCTCTACTTCATCCTCAAGAAGGTGATCCTGGAC
AAGGAACCAGATCAGACGGCGGCCTCCTACACGCCCGCCCAGACTCATGC
GACGGCCACACCTTATACTCCCGCCCAGACTCACGATCCGGCCACGGCCA
CAACCTATACTCCTGCCCAGACTCATGAGACGGCCAATGTGACTCCCACT
CCAACGCATGCCACCGCTATTGTCGCAAGCTTTCTAGACC

BO12727.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-PA 411 CG13704-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-RA 682 CG13704-RA 98..505 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4900415..4900692 147..424 1390 100 Plus
3L 28110227 3L 4900276..4900360 62..146 425 100 Plus
3L 28110227 3L 4898997..4899042 17..62 230 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:16:45 has no hits.

BO12727.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:57 Download gff for BO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13704-PA 1..411 17..427 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:42 Download gff for BO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13704-PA 1..411 17..427 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:21 Download gff for BO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 95..505 14..424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:33 Download gff for BO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 95..505 14..424 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:33 Download gff for BO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4898994..4899042 14..62 97 -> Plus
3L 4900277..4900360 63..146 100 -> Plus
3L 4900415..4900692 147..424 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:21 Download gff for BO12727.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4898994..4899042 14..62 97 -> Plus
arm_3L 4900277..4900360 63..146 100 -> Plus
arm_3L 4900415..4900692 147..424 100   Plus

BO12727.complete Sequence

442 bp assembled on 2006-10-11

GenBank Submission: FJ632536

> BO12727.complete
GAAGTTATCAGTCGACATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGG
TGATATGCCTGGTACTGTTGGCCTGCTGCCTGCAAGAATCGGAGGCCACG
CGACGTGTGAACCGCGGACGACGCACCCTTACCCGCAGATACTTCACTGG
CCTTGCTATTCCCGGATGGGCTCTCATCGTTTGTGTAGCGGTAGGTGAGC
TGCTGATTGGTGGAGCCCTCTACTTCATCCTCAAGAAGGTGATCCTGGAC
AAGGAACCAGATCAGACGGCGGCCTCCTACACGCCCGCCCAGACTCATGC
GACGGCCACACCTTATACTCCCGCCCAGACTCACGATCCGGCCACGGCCA
CAACCTATACTCCTGCCCAGACTCATGAGACGGCCAATGTGACTCCCACT
CCAACGCATGCCACCGCTATTGTCGCAAGCTTTCTAGACCAT

BO12727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-RA 411 CG13704-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-RA 682 CG13704-RA 98..505 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4900415..4900692 147..424 1390 100 Plus
3L 28110227 3L 4900276..4900360 62..146 425 100 Plus
3L 28110227 3L 4898997..4899042 17..62 230 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:31:54 has no hits.

BO12727.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:58 Download gff for BO12727.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 1..411 17..427 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:40 Download gff for BO12727.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 95..505 14..424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:49 Download gff for BO12727.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 98..505 17..426 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:58 Download gff for BO12727.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 95..505 14..424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:10 Download gff for BO12727.complete
Subject Subject Range Query Range Percent Splice Strand
CG13704-RA 98..505 17..426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:10 Download gff for BO12727.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4898997..4899042 17..62 100 -> Plus
3L 4900277..4900360 63..146 100 -> Plus
3L 4900415..4900692 147..426 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:49 Download gff for BO12727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4898997..4899042 17..62 100 -> Plus
arm_3L 4900277..4900360 63..146 100 -> Plus
arm_3L 4900415..4900692 147..426 99   Plus

BO12727.pep Sequence

Translation from 16 to 442

> BO12727.pep
MKLAKKCSTYLVICLVLLACCLQESEATRRVNRGRRTLTRRYFTGLAIPG
WALIVCVAVGELLIGGALYFILKKVILDKEPDQTAASYTPAQTHATATPY
TPAQTHDPATATTYTPAQTHETANVTPTPTHATAIVASFLDH

BO12727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13704-PA 136 CG13704-PA 1..136 1..136 709 100 Plus