Clone Sequence Records
BO12727.3prime Sequence
440 bp (439 high quality bases) assembled on 2006-05-09
> BO12727.3prime
ATGGTCTAGAAAGCTTGCGACAATAGCGGTGGCATGCGTTGGAGTGGGAG
TCACATTGGCCGTCTCATGAGTCTGGGCAGGAGTATAGGTTGTGGCCGTG
GCCGGATCGTGAGTCTGGGCGGGAGTATAAGGTGTGGCCGTCGCATGAGT
CTGGGCGGGCGTGTAGGAGGCCGCCGTCTGATCTGGTTCCTTGTCCAGGA
TCACCTTCTTGAGGATGAAGTAGAGGGCTCCACCAATCAGCAGCTCACCT
ACCGCTACACAAACGATGAGAGCCCATCCGGGAATAGCAAGGCCAGTGAA
GTATCTGCGGGTAAGGGTGCGTCGTCCGCGGTTCACACGTCGCGTGGCCT
CCGATTCTTGCAGGCAGCAGGCCAACAGTACCAGGCATATCACCAAGTAG
GTGGAGCACTTCTTAGCCAACTTCATGTCGACTGATAACT
BO12727.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13704-PA | 411 | CG13704-RA | 1..408 | 426..19 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:13:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13704-RA | 682 | CG13704-RA | 98..505 | 426..19 | 2040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4900415..4900692 | 296..19 | 1390 | 100 | Minus |
3L | 28110227 | 3L | 4900276..4900360 | 381..297 | 425 | 100 | Minus |
3L | 28110227 | 3L | 4898997..4899042 | 426..381 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:13:36 has no hits.
BO12727.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:56 Download gff for
BO12727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-PA | 1..411 | 16..426 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:40 Download gff for
BO12727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-PA | 1..411 | 16..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:53:14 Download gff for
BO12727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 95..505 | 19..429 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:42 Download gff for
BO12727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 95..505 | 19..429 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:42 Download gff for
BO12727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4898994..4899042 | 381..429 | 97 | -> | Minus |
3L | 4900277..4900360 | 297..380 | 100 | -> | Minus |
3L | 4900415..4900692 | 19..296 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:53:14 Download gff for
BO12727.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4898994..4899042 | 381..429 | 97 | -> | Minus |
arm_3L | 4900277..4900360 | 297..380 | 100 | -> | Minus |
arm_3L | 4900415..4900692 | 19..296 | 100 | | Minus |
BO12727.5prime Sequence
440 bp (439 high quality bases) assembled on 2006-05-08
> BO12727.5prime
GAAGTTATCAGTCGACATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGG
TGATATGCCTGGTACTGTTGGCCTGCTGCCTGCAAGAATCGGAGGCCACG
CGACGTGTGAACCGCGGACGACGCACCCTTACCCGCAGATACTTCACTGG
CCTTGCTATTCCCGGATGGGCTCTCATCGTTTGTGTAGCGGTAGGTGAGC
TGCTGATTGGTGGAGCCCTCTACTTCATCCTCAAGAAGGTGATCCTGGAC
AAGGAACCAGATCAGACGGCGGCCTCCTACACGCCCGCCCAGACTCATGC
GACGGCCACACCTTATACTCCCGCCCAGACTCACGATCCGGCCACGGCCA
CAACCTATACTCCTGCCCAGACTCATGAGACGGCCAATGTGACTCCCACT
CCAACGCATGCCACCGCTATTGTCGCAAGCTTTCTAGACC
BO12727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13704-PA | 411 | CG13704-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13704-RA | 682 | CG13704-RA | 98..505 | 17..424 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4900415..4900692 | 147..424 | 1390 | 100 | Plus |
3L | 28110227 | 3L | 4900276..4900360 | 62..146 | 425 | 100 | Plus |
3L | 28110227 | 3L | 4898997..4899042 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:16:45 has no hits.
BO12727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:43:57 Download gff for
BO12727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-PA | 1..411 | 17..427 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:42 Download gff for
BO12727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-PA | 1..411 | 17..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:21:21 Download gff for
BO12727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 95..505 | 14..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:33 Download gff for
BO12727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 95..505 | 14..424 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:33 Download gff for
BO12727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4898994..4899042 | 14..62 | 97 | -> | Plus |
3L | 4900277..4900360 | 63..146 | 100 | -> | Plus |
3L | 4900415..4900692 | 147..424 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:21:21 Download gff for
BO12727.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4898994..4899042 | 14..62 | 97 | -> | Plus |
arm_3L | 4900277..4900360 | 63..146 | 100 | -> | Plus |
arm_3L | 4900415..4900692 | 147..424 | 100 | | Plus |
BO12727.complete Sequence
442 bp assembled on 2006-10-11
GenBank Submission: FJ632536
> BO12727.complete
GAAGTTATCAGTCGACATGAAGTTGGCTAAGAAGTGCTCCACCTACTTGG
TGATATGCCTGGTACTGTTGGCCTGCTGCCTGCAAGAATCGGAGGCCACG
CGACGTGTGAACCGCGGACGACGCACCCTTACCCGCAGATACTTCACTGG
CCTTGCTATTCCCGGATGGGCTCTCATCGTTTGTGTAGCGGTAGGTGAGC
TGCTGATTGGTGGAGCCCTCTACTTCATCCTCAAGAAGGTGATCCTGGAC
AAGGAACCAGATCAGACGGCGGCCTCCTACACGCCCGCCCAGACTCATGC
GACGGCCACACCTTATACTCCCGCCCAGACTCACGATCCGGCCACGGCCA
CAACCTATACTCCTGCCCAGACTCATGAGACGGCCAATGTGACTCCCACT
CCAACGCATGCCACCGCTATTGTCGCAAGCTTTCTAGACCAT
BO12727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13704-RA | 411 | CG13704-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13704-RA | 682 | CG13704-RA | 98..505 | 17..424 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4900415..4900692 | 147..424 | 1390 | 100 | Plus |
3L | 28110227 | 3L | 4900276..4900360 | 62..146 | 425 | 100 | Plus |
3L | 28110227 | 3L | 4898997..4899042 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:31:54 has no hits.
BO12727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:37:58 Download gff for
BO12727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 1..411 | 17..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:59:40 Download gff for
BO12727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 95..505 | 14..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:49 Download gff for
BO12727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 98..505 | 17..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:37:58 Download gff for
BO12727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 95..505 | 14..424 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:10 Download gff for
BO12727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13704-RA | 98..505 | 17..426 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:10 Download gff for
BO12727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4898997..4899042 | 17..62 | 100 | -> | Plus |
3L | 4900277..4900360 | 63..146 | 100 | -> | Plus |
3L | 4900415..4900692 | 147..426 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:49 Download gff for
BO12727.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4898997..4899042 | 17..62 | 100 | -> | Plus |
arm_3L | 4900277..4900360 | 63..146 | 100 | -> | Plus |
arm_3L | 4900415..4900692 | 147..426 | 99 | | Plus |
BO12727.pep Sequence
Translation from 16 to 442
> BO12727.pep
MKLAKKCSTYLVICLVLLACCLQESEATRRVNRGRRTLTRRYFTGLAIPG
WALIVCVAVGELLIGGALYFILKKVILDKEPDQTAASYTPAQTHATATPY
TPAQTHDPATATTYTPAQTHETANVTPTPTHATAIVASFLDH
BO12727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13704-PA | 136 | CG13704-PA | 1..136 | 1..136 | 709 | 100 | Plus |