Clone BO12729 Report

Search the DGRC for BO12729

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:127
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG30031-RA
Protein status:BO12729.pep: validated full length
Sequenced Size:793

Clone Sequence Records

BO12729.3prime Sequence

791 bp (790 high quality bases) assembled on 2006-05-08

> BO12729.3prime
ATGGTCTAGAAAGCTTGCGGCATTGCTAATAACCCAGGAGCGGAGGGCAG
CAACATCGGCATAGACACCGGGGTAGTTGGAGTAAGCGCATCCGTATCCC
CAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTGGGCCACCGGA
GTCACCCTGGCAGGCATCCTTGCCGCTGGCAGCAGCGCAGATCATGGTGC
TGCGGATCTGGCTACCGTATCCGTAGGTGGAGGAAGCACACTGGCTCTGG
CTAACGATGTTCACGTTCACGTACTGCAGCTGGGAGGGGATGGAGCTGGA
TCCGTAGGAGAGAGTGCCCCATCCGGAGACGGAGGCCGCAGCGCCGTTGG
CGGGGTTGGAGCTAGCCAGACCGATGGCCTTGATGGTGGAGCTGAAGGTC
AGGGCGCCGTTGATCTTGATGATGGCAATGTCGTTGACCATGGTGTTGGC
GTTGTAGCCCTCGTGGTTCTTGAAGGAGGACACAGAGAAGGTGACACCGC
CGGAGCTCCAGTAGCTGGATCCAGCACGGATCTGCAGGACGGAAGCGGAC
ACGGACTGCAGACAGTGAGCGGCGGTCACGATGACGTTGCTGGAGTAGAT
GGATCCACCGCAGGAGTGGCTTCCACTGCGCTGCAGGGAGATCTGCCAGG
GGAAGCTGCTGATGGTGGTAGCAGAGCCGCCGACAATGCGGCCATCCAAC
TGAGGCAGGAGTCCCTCAGGGACGGTGCCTCCCAGGGCGCAGGCTACTGC
AGACAACAAGATCACGAACTTCAGCATGTCGACTGATAACT

BO12729.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12351-PA 762 deltaTry-RA 1..759 777..19 3795 100 Minus
CG30031-PA 762 CG30031-RA 1..759 777..19 3795 100 Minus
CG30028-PA 762 gammaTry-RA 1..759 777..19 3795 100 Minus
CG30025-PA 762 CG30025-RA 1..746 777..32 3730 100 Minus
CG18444-PA 771 alphaTry-RA 474..746 304..32 1290 98.9 Minus
CG18444-PA 771 alphaTry-RA 36..185 742..593 725 99.3 Minus
CG18211-PA 762 betaTry-RA 1..186 777..592 655 94 Minus
CG18211-PA 762 betaTry-RA 616..689 162..89 370 100 Minus
CG18211-PA 762 betaTry-RA 381..461 397..317 355 97.5 Minus
CG18444-PA 771 alphaTry-RA 199..275 579..503 310 96.1 Minus
CG18211-PA 762 betaTry-RA 196..275 582..503 250 92.5 Minus
CG18211-PA 762 betaTry-RA 700..746 78..32 235 100 Minus
CG18211-PA 762 betaTry-RA 298..350 480..428 215 96.2 Minus
CG18681-PA 771 epsilonTry-RA 606..650 172..128 200 97.7 Minus
CG18444-PA 771 alphaTry-RA 298..350 480..428 190 94.3 Minus
CG18681-PA 771 epsilonTry-RA 310..353 468..425 145 93.1 Minus
CG7754-PA 759 iotaTry-RA 687..713 79..53 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTry-RA 810 CG30028-RA 15..774 778..19 3800 100 Minus
deltaTry-RA 810 CG12351-RA 14..773 778..19 3800 100 Minus
CG30031-RA 811 CG30031-RA 16..775 778..19 3800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11349097..11349856 19..778 3800 100 Plus
2R 25286936 2R 11350826..11351585 778..19 3800 100 Minus
2R 25286936 2R 11355332..11356091 778..19 3800 100 Minus
2R 25286936 2R 11353601..11354360 19..778 3740 99.5 Plus
2R 25286936 2R 11344347..11345093 32..778 2640 90.2 Plus
2R 25286936 2R 11346341..11347100 778..19 2405 87.8 Minus
2R 25286936 2R 11345695..11346014 425..744 325 73.4 Plus
2R 25286936 2R 11345320..11345442 50..172 300 82.9 Plus
Blast to na_te.dros performed on 2015-02-12 13:47:15 has no hits.

BO12729.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:00 Download gff for BO12729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30028-PA 1..762 15..777 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:45 Download gff for BO12729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30028-PA 1..762 15..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:32 Download gff for BO12729.3prime
Subject Subject Range Query Range Percent Splice Strand
deltaTry-RA 8..776 15..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:07:22 Download gff for BO12729.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 10..779 14..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:07:22 Download gff for BO12729.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11349093..11349862 14..782 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:32 Download gff for BO12729.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7236598..7237367 14..782 99   Plus

BO12729.5prime Sequence

791 bp (790 high quality bases) assembled on 2006-05-08

> BO12729.5prime
GAAGTTATCAGTCGACATGCTGAAGTTCGTGATCTTGTTGTCTGCAGTAG
CCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGAAGCCACTCCTGCGGTGGATCCATCTACT
CCAGCAACGTCATCGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCCGTCCTGCAGATCCGTGCTGGATCCAGCTACTGGAGCTCCGGCGGTGT
CACCTTCTCTGTGTCCTCCTTCAAGAACCACGAGGGCTACAACGCCAACA
CCATGGTCAACGACATTGCCATCATCAAGATCAACGGCGCCCTGACCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
CGCTGCGGCCTCCGTCTCCGGATGGGGCACTCTCTCCTACGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAGCACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTTATTAGCAATGCCGCAAGCTTTCTAGACC

BO12729.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG12351-PA 762 deltaTry-RA 1..759 17..775 3795 100 Plus
CG30031-PA 762 CG30031-RA 1..759 17..775 3795 100 Plus
CG30028-PA 762 gammaTry-RA 1..759 17..775 3795 100 Plus
CG30025-PA 762 CG30025-RA 1..746 17..762 3730 100 Plus
CG18444-PA 771 alphaTry-RA 474..746 490..762 1290 98.9 Plus
CG18444-PA 771 alphaTry-RA 36..185 52..201 725 99.3 Plus
CG18211-PA 762 betaTry-RA 1..186 17..202 655 94 Plus
CG18211-PA 762 betaTry-RA 616..689 632..705 370 100 Plus
CG18211-PA 762 betaTry-RA 381..461 397..477 355 97.5 Plus
CG18444-PA 771 alphaTry-RA 199..275 215..291 310 96.1 Plus
CG18211-PA 762 betaTry-RA 196..275 212..291 250 92.5 Plus
CG18211-PA 762 betaTry-RA 700..746 716..762 235 100 Plus
CG18211-PA 762 betaTry-RA 298..350 314..366 215 96.2 Plus
CG18681-PA 771 epsilonTry-RA 606..650 622..666 200 97.7 Plus
CG18444-PA 771 alphaTry-RA 298..350 314..366 190 94.3 Plus
CG18681-PA 771 epsilonTry-RA 310..353 326..369 145 93.1 Plus
CG7754-PA 759 iotaTry-RA 687..713 715..741 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTry-RA 810 CG30028-RA 15..774 16..775 3800 100 Plus
deltaTry-RA 810 CG12351-RA 14..773 16..775 3800 100 Plus
CG30031-RA 811 CG30031-RA 16..775 16..775 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11349097..11349856 775..16 3800 100 Minus
2R 25286936 2R 11350826..11351585 16..775 3800 100 Plus
2R 25286936 2R 11355332..11356091 16..775 3800 100 Plus
2R 25286936 2R 11353601..11354360 775..16 3740 99.5 Minus
2R 25286936 2R 11344347..11345093 762..16 2640 90.2 Minus
2R 25286936 2R 11346341..11347100 16..775 2405 87.8 Plus
2R 25286936 2R 11345695..11346014 369..50 325 73.4 Minus
2R 25286936 2R 11345320..11345442 744..622 300 82.9 Minus
Blast to na_te.dros performed on 2015-02-13 08:23:50 has no hits.

BO12729.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:01 Download gff for BO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30028-PA 1..762 17..779 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:47 Download gff for BO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30028-PA 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:05 Download gff for BO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
deltaTry-RA 8..776 12..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:14:57 Download gff for BO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 10..779 12..780 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:14:57 Download gff for BO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11350820..11351589 12..780 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:05 Download gff for BO12729.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7238325..7239094 12..780 99   Plus

BO12729.complete Sequence

793 bp assembled on 2006-10-11

GenBank Submission: FJ632537

> BO12729.complete
GAAGTTATCAGTCGACATGCTGAAGTTCGTGATCTTGTTGTCTGCAGTAG
CCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGAAGCCACTCCTGCGGTGGATCCATCTACT
CCAGCAACGTCATCGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCCGTCCTGCAGATCCGTGCTGGATCCAGCTACTGGAGCTCCGGCGGTGT
CACCTTCTCTGTGTCCTCCTTCAAGAACCACGAGGGCTACAACGCCAACA
CCATGGTCAACGACATTGCCATCATCAAGATCAACGGCGCCCTGACCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
CGCTGCGGCCTCCGTCTCCGGATGGGGCACTCTCTCCTACGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAGCACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTTATTAGCAATGCCGCAAGCTTTCTAGACCAT

BO12729.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTry-RA 762 CG30028-PA 1..759 17..775 3795 100 Plus
deltaTry-RA 762 CG12351-PA 1..759 17..775 3795 100 Plus
CG30031-RA 762 CG30031-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTry-RA 810 CG30028-RA 15..774 16..775 3800 100 Plus
deltaTry-RA 810 CG12351-RA 14..773 16..775 3800 100 Plus
CG30031-RA 811 CG30031-RA 16..775 16..775 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11349097..11349856 775..16 3800 100 Minus
2R 25286936 2R 11350826..11351585 16..775 3800 100 Plus
2R 25286936 2R 11355332..11356091 16..775 3800 100 Plus
2R 25286936 2R 11353601..11354360 775..16 3740 99.5 Minus
2R 25286936 2R 11344347..11345093 762..16 2640 90.2 Minus
2R 25286936 2R 11346341..11347100 16..775 2405 87.8 Plus
2R 25286936 2R 11345695..11346014 369..50 325 73.4 Minus
2R 25286936 2R 11345320..11345442 744..622 300 82.9 Minus
Blast to na_te.dros performed on 2014-11-26 22:08:34 has no hits.

BO12729.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:04 Download gff for BO12729.complete
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:08 Download gff for BO12729.complete
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 1..765 15..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:09 Download gff for BO12729.complete
Subject Subject Range Query Range Percent Splice Strand
deltaTry-RA 15..773 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:04 Download gff for BO12729.complete
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 1..765 15..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:28 Download gff for BO12729.complete
Subject Subject Range Query Range Percent Splice Strand
CG30031-RA 17..775 17..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:28 Download gff for BO12729.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11350827..11351585 17..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:09 Download gff for BO12729.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7238332..7239090 17..777 99   Plus

BO12729.pep Sequence

Translation from 16 to 793

> BO12729.pep
MLKFVILLSAVACALGGTVPEGLLPQLDGRIVGGSATTISSFPWQISLQR
SGSHSCGGSIYSSNVIVTAAHCLQSVSASVLQIRAGSSYWSSGGVTFSVS
SFKNHEGYNANTMVNDIAIIKINGALTFSSTIKAIGLASSNPANGAAASV
SGWGTLSYGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRSTMICAAA
SGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAALRSWVI
SNAASFLDH

BO12729.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
gammaTry-PA 253 CG30028-PA 1..253 1..253 1291 100 Plus
deltaTry-PA 253 CG12351-PA 1..253 1..253 1291 100 Plus
CG30031-PA 253 CG30031-PA 1..253 1..253 1291 100 Plus
CG30025-PA 253 CG30025-PA 1..253 1..253 1288 99.6 Plus
alphaTry-PA 256 CG18444-PA 1..255 1..255 1180 88.6 Plus