Clone Sequence Records
BO12729.3prime Sequence
791 bp (790 high quality bases) assembled on 2006-05-08
> BO12729.3prime
ATGGTCTAGAAAGCTTGCGGCATTGCTAATAACCCAGGAGCGGAGGGCAG
CAACATCGGCATAGACACCGGGGTAGTTGGAGTAAGCGCATCCGTATCCC
CAGGAGACAACACCGACGAGGACTCCGCCGGAGACCAGTGGGCCACCGGA
GTCACCCTGGCAGGCATCCTTGCCGCTGGCAGCAGCGCAGATCATGGTGC
TGCGGATCTGGCTACCGTATCCGTAGGTGGAGGAAGCACACTGGCTCTGG
CTAACGATGTTCACGTTCACGTACTGCAGCTGGGAGGGGATGGAGCTGGA
TCCGTAGGAGAGAGTGCCCCATCCGGAGACGGAGGCCGCAGCGCCGTTGG
CGGGGTTGGAGCTAGCCAGACCGATGGCCTTGATGGTGGAGCTGAAGGTC
AGGGCGCCGTTGATCTTGATGATGGCAATGTCGTTGACCATGGTGTTGGC
GTTGTAGCCCTCGTGGTTCTTGAAGGAGGACACAGAGAAGGTGACACCGC
CGGAGCTCCAGTAGCTGGATCCAGCACGGATCTGCAGGACGGAAGCGGAC
ACGGACTGCAGACAGTGAGCGGCGGTCACGATGACGTTGCTGGAGTAGAT
GGATCCACCGCAGGAGTGGCTTCCACTGCGCTGCAGGGAGATCTGCCAGG
GGAAGCTGCTGATGGTGGTAGCAGAGCCGCCGACAATGCGGCCATCCAAC
TGAGGCAGGAGTCCCTCAGGGACGGTGCCTCCCAGGGCGCAGGCTACTGC
AGACAACAAGATCACGAACTTCAGCATGTCGACTGATAACT
BO12729.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12351-PA | 762 | deltaTry-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
CG30031-PA | 762 | CG30031-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
CG30028-PA | 762 | gammaTry-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
CG30025-PA | 762 | CG30025-RA | 1..746 | 777..32 | 3730 | 100 | Minus |
CG18444-PA | 771 | alphaTry-RA | 474..746 | 304..32 | 1290 | 98.9 | Minus |
CG18444-PA | 771 | alphaTry-RA | 36..185 | 742..593 | 725 | 99.3 | Minus |
CG18211-PA | 762 | betaTry-RA | 1..186 | 777..592 | 655 | 94 | Minus |
CG18211-PA | 762 | betaTry-RA | 616..689 | 162..89 | 370 | 100 | Minus |
CG18211-PA | 762 | betaTry-RA | 381..461 | 397..317 | 355 | 97.5 | Minus |
CG18444-PA | 771 | alphaTry-RA | 199..275 | 579..503 | 310 | 96.1 | Minus |
CG18211-PA | 762 | betaTry-RA | 196..275 | 582..503 | 250 | 92.5 | Minus |
CG18211-PA | 762 | betaTry-RA | 700..746 | 78..32 | 235 | 100 | Minus |
CG18211-PA | 762 | betaTry-RA | 298..350 | 480..428 | 215 | 96.2 | Minus |
CG18681-PA | 771 | epsilonTry-RA | 606..650 | 172..128 | 200 | 97.7 | Minus |
CG18444-PA | 771 | alphaTry-RA | 298..350 | 480..428 | 190 | 94.3 | Minus |
CG18681-PA | 771 | epsilonTry-RA | 310..353 | 468..425 | 145 | 93.1 | Minus |
CG7754-PA | 759 | iotaTry-RA | 687..713 | 79..53 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaTry-RA | 810 | CG30028-RA | 15..774 | 778..19 | 3800 | 100 | Minus |
deltaTry-RA | 810 | CG12351-RA | 14..773 | 778..19 | 3800 | 100 | Minus |
CG30031-RA | 811 | CG30031-RA | 16..775 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11349097..11349856 | 19..778 | 3800 | 100 | Plus |
2R | 25286936 | 2R | 11350826..11351585 | 778..19 | 3800 | 100 | Minus |
2R | 25286936 | 2R | 11355332..11356091 | 778..19 | 3800 | 100 | Minus |
2R | 25286936 | 2R | 11353601..11354360 | 19..778 | 3740 | 99.5 | Plus |
2R | 25286936 | 2R | 11344347..11345093 | 32..778 | 2640 | 90.2 | Plus |
2R | 25286936 | 2R | 11346341..11347100 | 778..19 | 2405 | 87.8 | Minus |
2R | 25286936 | 2R | 11345695..11346014 | 425..744 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11345320..11345442 | 50..172 | 300 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:47:15 has no hits.
BO12729.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:00 Download gff for
BO12729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30028-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:45 Download gff for
BO12729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30028-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:32 Download gff for
BO12729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
deltaTry-RA | 8..776 | 15..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:07:22 Download gff for
BO12729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30031-RA | 10..779 | 14..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:07:22 Download gff for
BO12729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11349093..11349862 | 14..782 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:32 Download gff for
BO12729.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7236598..7237367 | 14..782 | 99 | | Plus |
BO12729.5prime Sequence
791 bp (790 high quality bases) assembled on 2006-05-08
> BO12729.5prime
GAAGTTATCAGTCGACATGCTGAAGTTCGTGATCTTGTTGTCTGCAGTAG
CCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGAAGCCACTCCTGCGGTGGATCCATCTACT
CCAGCAACGTCATCGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCCGTCCTGCAGATCCGTGCTGGATCCAGCTACTGGAGCTCCGGCGGTGT
CACCTTCTCTGTGTCCTCCTTCAAGAACCACGAGGGCTACAACGCCAACA
CCATGGTCAACGACATTGCCATCATCAAGATCAACGGCGCCCTGACCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
CGCTGCGGCCTCCGTCTCCGGATGGGGCACTCTCTCCTACGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAGCACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTTATTAGCAATGCCGCAAGCTTTCTAGACC
BO12729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12351-PA | 762 | deltaTry-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG30031-PA | 762 | CG30031-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG30028-PA | 762 | gammaTry-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG30025-PA | 762 | CG30025-RA | 1..746 | 17..762 | 3730 | 100 | Plus |
CG18444-PA | 771 | alphaTry-RA | 474..746 | 490..762 | 1290 | 98.9 | Plus |
CG18444-PA | 771 | alphaTry-RA | 36..185 | 52..201 | 725 | 99.3 | Plus |
CG18211-PA | 762 | betaTry-RA | 1..186 | 17..202 | 655 | 94 | Plus |
CG18211-PA | 762 | betaTry-RA | 616..689 | 632..705 | 370 | 100 | Plus |
CG18211-PA | 762 | betaTry-RA | 381..461 | 397..477 | 355 | 97.5 | Plus |
CG18444-PA | 771 | alphaTry-RA | 199..275 | 215..291 | 310 | 96.1 | Plus |
CG18211-PA | 762 | betaTry-RA | 196..275 | 212..291 | 250 | 92.5 | Plus |
CG18211-PA | 762 | betaTry-RA | 700..746 | 716..762 | 235 | 100 | Plus |
CG18211-PA | 762 | betaTry-RA | 298..350 | 314..366 | 215 | 96.2 | Plus |
CG18681-PA | 771 | epsilonTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG18444-PA | 771 | alphaTry-RA | 298..350 | 314..366 | 190 | 94.3 | Plus |
CG18681-PA | 771 | epsilonTry-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
CG7754-PA | 759 | iotaTry-RA | 687..713 | 715..741 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaTry-RA | 810 | CG30028-RA | 15..774 | 16..775 | 3800 | 100 | Plus |
deltaTry-RA | 810 | CG12351-RA | 14..773 | 16..775 | 3800 | 100 | Plus |
CG30031-RA | 811 | CG30031-RA | 16..775 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11349097..11349856 | 775..16 | 3800 | 100 | Minus |
2R | 25286936 | 2R | 11350826..11351585 | 16..775 | 3800 | 100 | Plus |
2R | 25286936 | 2R | 11355332..11356091 | 16..775 | 3800 | 100 | Plus |
2R | 25286936 | 2R | 11353601..11354360 | 775..16 | 3740 | 99.5 | Minus |
2R | 25286936 | 2R | 11344347..11345093 | 762..16 | 2640 | 90.2 | Minus |
2R | 25286936 | 2R | 11346341..11347100 | 16..775 | 2405 | 87.8 | Plus |
2R | 25286936 | 2R | 11345695..11346014 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11345320..11345442 | 744..622 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:23:50 has no hits.
BO12729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:44:01 Download gff for
BO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30028-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:22:47 Download gff for
BO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30028-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:39:05 Download gff for
BO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
deltaTry-RA | 8..776 | 12..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:14:57 Download gff for
BO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30031-RA | 10..779 | 12..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:14:57 Download gff for
BO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11350820..11351589 | 12..780 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:39:05 Download gff for
BO12729.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7238325..7239094 | 12..780 | 99 | | Plus |
BO12729.complete Sequence
793 bp assembled on 2006-10-11
GenBank Submission: FJ632537
> BO12729.complete
GAAGTTATCAGTCGACATGCTGAAGTTCGTGATCTTGTTGTCTGCAGTAG
CCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACTCCTGCCTCAGTTGGAT
GGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCCCTGGCA
GATCTCCCTGCAGCGCAGTGGAAGCCACTCCTGCGGTGGATCCATCTACT
CCAGCAACGTCATCGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCT
TCCGTCCTGCAGATCCGTGCTGGATCCAGCTACTGGAGCTCCGGCGGTGT
CACCTTCTCTGTGTCCTCCTTCAAGAACCACGAGGGCTACAACGCCAACA
CCATGGTCAACGACATTGCCATCATCAAGATCAACGGCGCCCTGACCTTC
AGCTCCACCATCAAGGCCATCGGTCTGGCTAGCTCCAACCCCGCCAACGG
CGCTGCGGCCTCCGTCTCCGGATGGGGCACTCTCTCCTACGGATCCAGCT
CCATCCCCTCCCAGCTGCAGTACGTGAACGTGAACATCGTTAGCCAGAGC
CAGTGTGCTTCCTCCACCTACGGATACGGTAGCCAGATCCGCAGCACCAT
GATCTGCGCTGCTGCCAGCGGCAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTGGTCTCCGGCGGAGTCCTCGTCGGTGTTGTCTCCTGGGGATAC
GGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGCCCT
CCGCTCCTGGGTTATTAGCAATGCCGCAAGCTTTCTAGACCAT
BO12729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaTry-RA | 762 | CG30028-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
deltaTry-RA | 762 | CG12351-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
CG30031-RA | 762 | CG30031-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaTry-RA | 810 | CG30028-RA | 15..774 | 16..775 | 3800 | 100 | Plus |
deltaTry-RA | 810 | CG12351-RA | 14..773 | 16..775 | 3800 | 100 | Plus |
CG30031-RA | 811 | CG30031-RA | 16..775 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11349097..11349856 | 775..16 | 3800 | 100 | Minus |
2R | 25286936 | 2R | 11350826..11351585 | 16..775 | 3800 | 100 | Plus |
2R | 25286936 | 2R | 11355332..11356091 | 16..775 | 3800 | 100 | Plus |
2R | 25286936 | 2R | 11353601..11354360 | 775..16 | 3740 | 99.5 | Minus |
2R | 25286936 | 2R | 11344347..11345093 | 762..16 | 2640 | 90.2 | Minus |
2R | 25286936 | 2R | 11346341..11347100 | 16..775 | 2405 | 87.8 | Plus |
2R | 25286936 | 2R | 11345695..11346014 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11345320..11345442 | 744..622 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:08:34 has no hits.
BO12729.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:04 Download gff for
BO12729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30031-RA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:08 Download gff for
BO12729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30031-RA | 1..765 | 15..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:09 Download gff for
BO12729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
deltaTry-RA | 15..773 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:04 Download gff for
BO12729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30031-RA | 1..765 | 15..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:28 Download gff for
BO12729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30031-RA | 17..775 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:28 Download gff for
BO12729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11350827..11351585 | 17..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:09 Download gff for
BO12729.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7238332..7239090 | 17..777 | 99 | | Plus |
BO12729.pep Sequence
Translation from 16 to 793
> BO12729.pep
MLKFVILLSAVACALGGTVPEGLLPQLDGRIVGGSATTISSFPWQISLQR
SGSHSCGGSIYSSNVIVTAAHCLQSVSASVLQIRAGSSYWSSGGVTFSVS
SFKNHEGYNANTMVNDIAIIKINGALTFSSTIKAIGLASSNPANGAAASV
SGWGTLSYGSSSIPSQLQYVNVNIVSQSQCASSTYGYGSQIRSTMICAAA
SGKDACQGDSGGPLVSGGVLVGVVSWGYGCAYSNYPGVYADVAALRSWVI
SNAASFLDH
BO12729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaTry-PA | 253 | CG30028-PA | 1..253 | 1..253 | 1291 | 100 | Plus |
deltaTry-PA | 253 | CG12351-PA | 1..253 | 1..253 | 1291 | 100 | Plus |
CG30031-PA | 253 | CG30031-PA | 1..253 | 1..253 | 1291 | 100 | Plus |
CG30025-PA | 253 | CG30025-PA | 1..253 | 1..253 | 1288 | 99.6 | Plus |
alphaTry-PA | 256 | CG18444-PA | 1..255 | 1..255 | 1180 | 88.6 | Plus |